Wed Apr 24 20:11:52 UTC 2024 I: starting to build librostlab/trixie/armhf on jenkins on '2024-04-24 20:11' Wed Apr 24 20:11:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/2247/console.log Wed Apr 24 20:11:52 UTC 2024 I: Downloading source for trixie/librostlab=1.0.20-13.1 --2024-04-24 20:11:52-- http://deb.debian.org/debian/pool/main/libr/librostlab/librostlab_1.0.20-13.1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2455 (2.4K) [text/prs.lines.tag] Saving to: ‘librostlab_1.0.20-13.1.dsc’ 0K .. 100% 351M=0s 2024-04-24 20:11:52 (351 MB/s) - ‘librostlab_1.0.20-13.1.dsc’ saved [2455/2455] Wed Apr 24 20:11:52 UTC 2024 I: librostlab_1.0.20-13.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librostlab Binary: librostlab3t64, librostlab3-dev, librostlab-doc Architecture: any all Version: 1.0.20-13.1 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/librostlab Vcs-Git: https://salsa.debian.org/med-team/librostlab.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-linktree, debhelper Build-Depends-Arch: dpkg-dev (>= 1.22.5), d-shlibs (>= 0.106~) Build-Depends-Indep: doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common, python3-sphinxcontrib.jquery Package-List: librostlab-doc deb doc optional arch=all librostlab3-dev deb libdevel optional arch=any librostlab3t64 deb libs optional arch=any Checksums-Sha1: 03efd8b5399a0553bb834077f3bc214b22c7233b 354367 librostlab_1.0.20.orig.tar.gz 926b6f54f6697e32d831a72751c85dbf8b5f4786 6112 librostlab_1.0.20-13.1.debian.tar.xz Checksums-Sha256: db4295b8add574016048597216dc7d1fa95a719377b5ce962e39278198935efa 354367 librostlab_1.0.20.orig.tar.gz 5722ac3cfcb40484f22b916bcc80aad2d092caf16dc326ef4c4b4bef47e37b5d 6112 librostlab_1.0.20-13.1.debian.tar.xz Files: 3a3bfdba83ade5cede3f0d4197f41f1f 354367 librostlab_1.0.20.orig.tar.gz 86cfd20d3c7acf5248077e606e45cdd0 6112 librostlab_1.0.20-13.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEpi0s+9ULm1vzYNVLFZ61xO/Id0wFAmXfbAoACgkQFZ61xO/I d0wRGw//Q+Z06wsGOA0s8u363HVs1BumC+feQlSUrUaun50H6+4UDt/veXE9FUjM PdykrU74imzZR7WjBd+PVpfvOVTrz+eXNS5M8TATNDZr5p7hKW6h5MLMQayeUf1L xFknyrHAc5pOMTS/gJOw0mZWMoA9p+TwuZfHU4NyQFoY688bCtnUuxFn2GIl21XF YxLvgfBBunPUHeUcKUv/+7i6jGje77OVbwT6qlC8rhLS1Opm92x7x7QE3NfcKXg5 8q7UnRDKkBVZdWarWzkrz0Db8LcycPX0ul1bR4jx6P5rq7PfcwehAEs9UxlY3uc1 ZY+bKNdkRFIZGJUO9CCjGaHq7AfrQ6v/pMRklbfCleVHXr/DEqhSRn9bg4IFarPs S90dhl2exlJKGBWVOwI1hvOiw7yS7Pm/3rXghha1G7y2ItO3AZ5kP6JhDNScW+XX Y9APoc4+kbFjQMLuLNyvDogVGsQw+gqb/cuJNtHrpuhk7w0lzk0HvZD3qv7Y9vdb R+r4VmZ9TlgaPlQacgdfRUOoropEmodqORQDvGkrTWqrG7IQd3er8TQRT8qsOz9u Efh2QilFVRk+KbaPkSCXMxYYp8/+gVoyMQ/Egk8EfbXEcAyI95AHUnV3rALN7IML PHuJvh+ioqroQ7UQyc+NKYZfsnYXEthduWxqsVHWuWobf9UIcWs= =Bnw0 -----END PGP SIGNATURE----- Wed Apr 24 20:11:52 UTC 2024 I: Checking whether the package is not for us Wed Apr 24 20:11:52 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Wed Apr 24 20:11:52 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Wed Apr 24 20:50:58 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 24 08:12:02 -12 2024 I: pbuilder-time-stamp: 1713989522 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librostlab_1.0.20-13.1.dsc] I: copying [./librostlab_1.0.20.orig.tar.gz] I: copying [./librostlab_1.0.20-13.1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 28 17:23:22 2024 gpgv: using RSA key A62D2CFBD50B9B5BF360D54B159EB5C4EFC8774C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./librostlab_1.0.20-13.1.dsc: no acceptable signature found dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-13.1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4439/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='102ed5dc7c0a47e58789de9b8f099922' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4439' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/pbuilderrc_6MJG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/b1 --logfile b1/build.log librostlab_1.0.20-13.1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-20-armmp #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 24 11:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4439/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), dh-linktree, debhelper, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common, python3-sphinxcontrib.jquery, dpkg-dev (>= 1.22.5), d-shlibs (>= 0.106~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19467 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-linktree; however: Package dh-linktree is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on sphinx-common; however: Package sphinx-common is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinxcontrib.jquery; however: Package python3-sphinxcontrib.jquery is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-linktree{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp16{a} libclang1-16{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblerc4{a} libllvm16{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libsharpyuv0{a} libsm6{a} libsub-override-perl{a} libsvtav1enc1d1{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libyuv0{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} preview-latex-style{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinxcontrib.jquery{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl default-jre dvisvgm fonts-liberation2 javascript-common krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx python3-pil ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 187 newly installed, 0 to remove and 0 not upgraded. Need to get 222 MB of archives. After unpacking 804 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.8-1 [802 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.8-1 [1707 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-1 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-5+b1 [30.4 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.0-2+b1 [19.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-5+b1 [75.4 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-5+b1 [289 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-5+b1 [112 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3 armhf 1.3.4+ds-1 [70.0 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3 [33.7 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8 armhf 8.2-3+b1 [144 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.8-1 [1709 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.8-1 [597 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.6-1 [9224 B] Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.6-1 [26.2 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.1.5-1 [1208 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.106 [10.9 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 50 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf dh-linktree all 0.9 [11.3 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libllvm16 armhf 1:16.0.6-20 [20.6 MB] Get: 65 http://deb.debian.org/debian trixie/main armhf libclang-cpp16 armhf 1:16.0.6-20 [9875 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libclang1-16 armhf 1:16.0.6-20 [5545 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libfmt9 armhf 9.1.0+ds1-2 [105 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf doxygen armhf 1.9.8+ds-2 [4458 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libpng16-16 armhf 1.6.43-1 [262 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b1 [371 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libcdt5 armhf 2.42.2-8 [37.0 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libcgraph6 armhf 2.42.2-8 [56.0 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libaom3 armhf 3.8.2-2 [1526 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libdav1d7 armhf 1.4.1-1 [262 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libabsl20220623 armhf 20220623.1-3 [361 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libgav1-1 armhf 0.18.0-1+b1 [284 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf librav1e0 armhf 0.7.1-2 [546 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.3.2-0.4 [105 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libsvtav1enc1d1 armhf 1.7.0+dfsg-2+b1 [936 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-2+b2 [143 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libyuv0 armhf 0.0~git202401110.af6ac82-1 [85.1 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libavif16 armhf 1.0.4-1 [95.0 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libheif-plugin-dav1d armhf 1.17.6-1 [9252 B] Get: 91 http://deb.debian.org/debian trixie/main armhf libde265-0 armhf 1.0.15-1 [145 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libheif-plugin-libde265 armhf 1.17.6-1 [12.0 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libheif1 armhf 1.17.6-1 [242 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.3.2-0.4 [261 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libxpm4 armhf 1:3.5.17-1 [49.5 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libgd3 armhf 2.3.3-9+b1 [103 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libglib2.0-0 armhf 2.78.4-1 [1281 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-5+b1 [137 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.0-1+b1 [441 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libltdl7 armhf 2.4.7-7 [390 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 8.3.0-2 [2155 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libpango-1.0-0 armhf 1.52.0+ds-1 [192 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libpangoft2-1.0-0 armhf 1.52.0+ds-1 [41.8 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libpangocairo-1.0-0 armhf 1.52.0+ds-1 [31.2 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libpathplan4 armhf 2.42.2-8 [39.3 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libgvc6 armhf 2.42.2-8 [578 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libgvpr2 armhf 2.42.2-8 [164 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf liblab-gamut1 armhf 2.42.2-8 [198 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libxaw7 armhf 2:1.0.14-1 [167 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf graphviz armhf 2.42.2-8 [497 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libapache-pom-java all 29-2 [5276 B] Get: 136 http://deb.debian.org/debian trixie/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf libfontbox-java all 1:1.8.16-5 [211 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf libjson-perl all 4.10000-1 [87.5 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libkpathsea6 armhf 2023.20230311.66589-9 [144 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 146 http://deb.debian.org/debian trixie/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf libpotrace0 armhf 1.16-2+b1 [22.6 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf libptexenc1 armhf 2023.20230311.66589-9 [42.8 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf libsynctex2 armhf 2023.20230311.66589-9 [48.5 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libteckit0 armhf 2.5.12+ds1-1 [259 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf libtexlua53-5 armhf 2023.20230311.66589-9 [82.2 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1+b1 [52.3 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf tex-common all 6.18 [32.5 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf preview-latex-style all 13.2-1 [350 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf python-babel-localedata all 2.14.0-1 [5701 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf python3-alabaster all 0.7.12-1 [20.8 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf python3-babel all 2.14.0-1 [111 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf python3-certifi all 2023.11.17-1 [155 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf python3-roman all 3.3-3 [9880 B] Get: 164 http://deb.debian.org/debian trixie/main armhf python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf python3-idna all 3.6-2 [37.0 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf python3-imagesize all 1.4.1-1 [6688 B] Get: 167 http://deb.debian.org/debian trixie/main armhf python3-markupsafe armhf 2.1.5-1 [13.9 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf python3-jinja2 all 3.1.3-1 [119 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.0-1 [45.5 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf python3-six all 1.16.0-6 [16.3 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf python3-urllib3 all 1.26.18-2 [116 kB] Get: 173 http://deb.debian.org/debian trixie/main armhf python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf sphinx-common all 7.2.6-6 [702 kB] Get: 176 http://deb.debian.org/debian trixie/main armhf python3-sphinx all 7.2.6-6 [552 kB] Get: 177 http://deb.debian.org/debian trixie/main armhf python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 178 http://deb.debian.org/debian trixie/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf texlive-binaries armhf 2023.20230311.66589-9 [6071 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 181 http://deb.debian.org/debian trixie/main armhf texlive-base all 2023.20240207-1 [22.0 MB] Get: 182 http://deb.debian.org/debian trixie/main armhf texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 183 http://deb.debian.org/debian trixie/main armhf texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 184 http://deb.debian.org/debian trixie/main armhf texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 185 http://deb.debian.org/debian trixie/main armhf texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 186 http://deb.debian.org/debian trixie/main armhf texlive-latex-extra all 2023.20240207-1 [19.7 MB] Get: 187 http://deb.debian.org/debian trixie/main armhf texlive-plain-generic all 2023.20240207-1 [29.0 MB] Fetched 222 MB in 24s (9436 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19467 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.8-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_armhf.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:armhf (3.11.8-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.6-1_armhf.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.20.1-5+b1_armhf.deb ... Unpacking libkrb5support0:armhf (1.20.1-5+b1) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.0-2+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.0-2+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.20.1-5+b1_armhf.deb ... Unpacking libk5crypto3:armhf (1.20.1-5+b1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.20.1-5+b1_armhf.deb ... Unpacking libkrb5-3:armhf (1.20.1-5+b1) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.20.1-5+b1_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.20.1-5+b1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) ... Selecting previously unselected package libtirpc3:armhf. Preparing to unpack .../11-libtirpc3_1.3.4+ds-1_armhf.deb ... Unpacking libtirpc3:armhf (1.3.4+ds-1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../14-libreadline8_8.2-3+b1_armhf.deb ... Unpacking libreadline8:armhf (8.2-3+b1) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../15-libpython3.11-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../16-python3.11_3.11.8-1_armhf.deb ... Unpacking python3.11 (3.11.8-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.11.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.6-1) ... Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20838 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.6-1_armhf.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libavif16:armhf (1.0.4-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libedit2:armhf (3.1-20230828-1) ... Setting up libreadline8:armhf (8.2-3+b1) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libptexenc1:armhf (2023.20230311.66589-9) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b1) ... Setting up libgssapi-krb5-2:armhf (1.20.1-5+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libgvpr2:armhf (2.42.2-8) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up xml-core (0.19) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libllvm16:armhf (1:16.0.6-20) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libtirpc3:armhf (1.3.4+ds-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxpm4:armhf (1:3.5.17-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libclang1-16 (1:16.0.6-20) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:armhf (1.52.0+ds-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.0-1+b1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up sphinx-common (7.2.6-6) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up libclang-cpp16 (1:16.0.6-20) ... Setting up libnsl2:armhf (1.3.0-3) ... Setting up libpangoft2-1.0-0:armhf (1.52.0+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.52.0+ds-1) ... Setting up libxmu6:armhf (2:1.1.3-3) ... Setting up libxi6:armhf (2:1.8.1-1) ... Setting up preview-latex-style (13.2-1) ... Setting up libpython3.11-stdlib:armhf (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up libxaw7:armhf (2:1.0.14-1) ... Setting up doxygen (1.9.8+ds-2) ... Setting up texlive-binaries (2023.20230311.66589-9) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libpython3-stdlib:armhf (3.11.6-1) ... Setting up dh-linktree (0.9) ... Setting up python3.11 (3.11.8-1) ... Setting up texlive-plain-generic (2023.20240207-1) ... Setting up python3 (3.11.6-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-roman (3.3-3) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up python3-idna (3.6-2) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up libheif-plugin-dav1d:armhf (1.17.6-1) ... Setting up libheif-plugin-libde265:armhf (1.17.6-1) ... Setting up libheif1:armhf (1.17.6-1) ... Setting up libgd3:armhf (2.3.3-9+b1) ... Setting up libgvc6 (2.42.2-8) ... Setting up graphviz (2.42.2-8) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/librostlab-1.0.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librostlab_1.0.20-13.1_source.changes dpkg-buildpackage: info: source package librostlab dpkg-buildpackage: info: source version 1.0.20-13.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Drung dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with linktree dh_clean debian/rules binary dh binary --with linktree dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:9: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... 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PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 841 of file './Doxyfile' has become obsolete. 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Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/librostlab-1.0.20/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... Generating code for file rostlab/readFasta.h... Generating code for file rostlab/rostlab_stdexcept.h... Generating code for file rostlab/rostlab_stdio.h... Generating code for file rostlab/rostlab_stdlib.h... Generating code for file rostlab/umask_resource.h... Generating file documentation... Generating docs for file rostlab/aux_functions.h... Generating docs for file rostlab/blosum62.h... Generating docs for file rostlab/cwd_resource.h... Generating docs for file rostlab/cxxgrp.h... Generating docs for file rostlab/cxxpwd.h... Generating docs for file rostlab/euid_egid_resource.h... Generating docs for file rostlab/file_lock_resource.h... Generating docs for file rostlab/mapAA2int.h... Generating docs for file rostlab/readFasta.h... Generating docs for file rostlab/rostlab_stdexcept.h... Generating docs for file rostlab/rostlab_stdio.h... Generating docs for file rostlab/rostlab_stdlib.h... Generating docs for file rostlab/umask_resource.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::umask_resource... Generating docs for compound rostlab::uname_not_found_error... Generating docs for namespace rostlab::bio Generating docs for compound rostlab::bio::seq... Generating docs for namespace rostlab::bio::fmt Generating docs for compound rostlab::bio::fmt::fasta... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 5 parallel threads... 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symbol lookup cache used 446/65536 hits=4421 misses=446 finished... cd ../doxygen-doc/latex; \ rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \ /usr/bin/pdflatex refman.tex; \ /usr/bin/makeindex refman.idx; \ /usr/bin/pdflatex refman.tex; \ countdown=5; \ while /usr/bin/egrep 'Rerun (LaTeX|to get cross-references right)' \ refman.log > /dev/null 2>&1 \ && test $countdown -gt 0; do \ /usr/bin/pdflatex refman.tex; \ countdown=`expr $countdown - 1`; \ done; \ mv refman.pdf ../librostlab.pdf This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) 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nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] [5] [6] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] [11] [12] [13] [14] [15] [16]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [17] [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex <./classrostlab_1_1error__backtracer__ inherit__graph.pdf> [24]) (./classrostlab_1_1euid__egid__resource.tex [25]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df> <./classrostlab_1_1exception__coll__graph.pdf> [26]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [27] [28]) (./classrostlab_1_1gid__not__found__error.tex [29] <./classrostlab_1_1gid__not_ _found__error__inherit__graph.pdf> <./classrostlab_1_1gid__not__found__error__c oll__graph.pdf> [30]) (./classrostlab_1_1gname__not__found__error.tex <./classr ostlab_1_1gname__not__found__error__inherit__graph.pdf> [31] <./classrostlab_1_ 1gname__not__found__error__coll__graph.pdf> [32]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error__inheri t__graph.pdf> <./classrostlab_1_1runtime__error__coll__graph.pdf> [33]) (./classrostlab_1_1bio_1_1seq.tex [34]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not__foun d__error__inherit__graph.pdf> [35] <./classrostlab_1_1uid__not__found__error__c oll__graph.pdf> [36]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex [37] <./classrostlab_1_1uname__ not__found__error__inherit__graph.pdf> <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf> [38]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostlab_1_1fi le__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1_1file__ lock__resource_1_1wouldblock__coll__graph.pdf> [39]) [40] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [41]) (./aux__functions_8h_source.tex [42] [43]) (./blosum62_8h.tex [44]) (./blosum62_8h_source.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pd f>) (./cwd__resource_8h_source.tex [45] [46]) (./cxxgrp_8h.tex <./cxxgrp_8h__in cl.pdf>) (./cxxgrp_8h_source.tex [47] [48]) (./cxxpwd_8h.tex <./cxxpwd_8h__incl .pdf> [49]) (./cxxpwd_8h_source.tex [50] [51]) (./euid__egid__resource_8h.tex < ./euid__egid__resource_8h__incl.pdf>) (./euid__egid__resource_8h_source.tex [52] [53]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf> ) (./file__lock__resource_8h_source.tex [54] [55]) (./mapAA2int_8h.tex <./mapAA 2int_8h__incl.pdf>) (./mapAA2int_8h_source.tex [56] [57]) (./readFasta_8h.tex < ./readFasta_8h__incl.pdf>) (./readFasta_8h_source.tex [58] [59]) (./rostlab__stdexcept_8h.tex <./rostlab__stdexcept_8h__incl.pdf> <./rostlab__st dexcept_8h__dep__incl.pdf> [60]) (./rostlab__stdexcept_8h_source.tex [61]) (./rostlab__stdio_8h.tex <./rostlab__stdio_8h__incl.pdf>) (./rostlab__stdio_8h_source.tex [62]) (./rostlab__stdlib_8h.tex <./rostlab__std lib_8h__incl.pdf> [63]) (./rostlab__stdlib_8h_source.tex [64] [65]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf>) (./umask__resource_8h_source.tex [66]) [67] [68] (./refman.ind [69] [70] [71]) (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) Output written on refman.pdf (79 pages, 538560 bytes). Transcript written on refman.log. make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_build -Nlibrostlab-doc make -j3 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make all-recursive make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making all in lib make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make all-am make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/arm-linux-gnueabihf librostlab_la-blosum62.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cr .libs/librostlab.a librostlab_la-blosum62.o libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_test make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making check in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make check-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/librostlab-1.0.20/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making install in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make install-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /usr/bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab.la '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so.3.0.0 libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a libtool: install: chmod 644 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a libtool: install: ranlib /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab3-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/librostlab3t64/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.a debian/librostlab3-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so debian/librostlab3-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so.3 debian/librostlab3t64/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/arm-linux-gnueabihf/librostlab.so.3.0.0 debian/librostlab3t64/usr/lib/arm-linux-gnueabihf PKGDEV=librostlab3-dev PKGSHL=librostlab3t64 install -d -m 755 debian/librostlab3-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_installdocs dh_installdocs: warning: Cannot auto-detect main package for librostlab-doc. If the default is wrong, please use --doc-main-package find debian -name "*_*.md5" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_installchangelogs dh_installexamples dh_lintian dh_perl dh_link dh_linktree dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_compress -Xlibrostlab.tag make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_missing --list-missing make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3t64: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3t64: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'librostlab3t64' in '../librostlab3t64_1.0.20-13.1_armhf.deb'. dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-13.1_armhf.deb'. dpkg-deb: building package 'librostlab3t64-dbgsym' in '../librostlab3t64-dbgsym_1.0.20-13.1_armhf.deb'. dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-13.1_all.deb'. dpkg-genbuildinfo --build=binary -O../librostlab_1.0.20-13.1_armhf.buildinfo dpkg-genchanges --build=binary -O../librostlab_1.0.20-13.1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4439 and its subdirectories I: Current time: Wed Apr 24 08:50:51 -12 2024 I: pbuilder-time-stamp: 1713991851 Wed Apr 24 20:51:00 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Wed Apr 24 20:51:00 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Wed Apr 24 21:35:21 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Wed Apr 24 21:35:25 UTC 2024 I: librostlab_1.0.20-13.1_armhf.changes: Format: 1.8 Date: Wed, 28 Feb 2024 17:23:02 +0000 Source: librostlab Binary: librostlab-doc librostlab3-dev librostlab3t64 librostlab3t64-dbgsym Architecture: all armhf Version: 1.0.20-13.1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Benjamin Drung Description: librostlab-doc - C++ library for computational biology (documentation) librostlab3-dev - C++ library for computational biology (development) librostlab3t64 - C++ library for computational biology Closes: 1062612 Changes: librostlab (1.0.20-13.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062612 Checksums-Sha1: 6ef5acd774b72efbb0f62e3a8afa253cc3d8e004 983076 librostlab-doc_1.0.20-13.1_all.deb fb324c7347a305a1823eea047b0a0460412dcef7 12560 librostlab3-dev_1.0.20-13.1_armhf.deb ccf63c7fc082924a14cd98d24cebe87950aab212 2524 librostlab3t64-dbgsym_1.0.20-13.1_armhf.deb 8afb8e44e08b123579e6e277076a17e34ec0f844 5088 librostlab3t64_1.0.20-13.1_armhf.deb 8dc7114c1dedbe8ae54c78c1f9ecba90460f1b73 10892 librostlab_1.0.20-13.1_armhf.buildinfo Checksums-Sha256: bf35884faa84d62a1a1bddd55c6905347b38c12e0f808eea6490f53e7bc5cacf 983076 librostlab-doc_1.0.20-13.1_all.deb 67fbc7fc4a8b9dbe12a65073cbf1a332dd8c22cf35a1d12695438e8d9abd2df1 12560 librostlab3-dev_1.0.20-13.1_armhf.deb ad287b68bff8268d39906c50886079f053f07bdbe75cf802964de84cb48ea074 2524 librostlab3t64-dbgsym_1.0.20-13.1_armhf.deb e3d5c00cc41322b389ece1d0f073206fa121bbd4e2a8718686db7fae87984307 5088 librostlab3t64_1.0.20-13.1_armhf.deb 002f3a6edc24e7b8251429f99e5037c7141c6f18bf6ad759b9ac48eecafa99d7 10892 librostlab_1.0.20-13.1_armhf.buildinfo Files: e8a69bbf1fa1563a7646da05a72cb7a9 983076 doc optional librostlab-doc_1.0.20-13.1_all.deb 0e390b40f441f5b52c7ce38406b4c82b 12560 libdevel optional librostlab3-dev_1.0.20-13.1_armhf.deb 15ec90d78a33156b921eb3b5f98378a8 2524 debug optional librostlab3t64-dbgsym_1.0.20-13.1_armhf.deb 1214a60dec4db181914d1e0df8b37cb8 5088 libs optional librostlab3t64_1.0.20-13.1_armhf.deb 81564b0de14fcc4fe6ba0ed96f7006d8 10892 science optional librostlab_1.0.20-13.1_armhf.buildinfo Wed Apr 24 21:35:27 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_11-2247.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/librostlab_1.0.20-13.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/librostlab_1.0.20-13.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/librostlab_1.0.20-13.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/b1/librostlab_1.0.20-13.1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.FW2ZabkI/b2/librostlab_1.0.20-13.1_armhf.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 5.620s) 2.907s 14 calls dumppdf 2.299s 7 calls diff 0.236s 11 calls pdftotext 0.148s 6 calls xz 0.016s 2 calls gzip 0.007s 1 call cmp 0.007s 1 call cmp (external) 0.001s 12 calls cmp (internal) ## compare_files (cumulative) (total time: 164.796s) 27.718s 1 call abc.DotChangesFile 27.697s 1 call abc.DebFile 27.668s 2 calls abc.XzFile 27.470s 1 call abc.DebDataTarFile 27.107s 1 call abc.GzipFile 27.083s 1 call abc.PdfFile 0.040s 1 call abc.TarFile 0.013s 1 call abc.Md5sumsFile ## container_extract (total time: 0.273s) 0.148s 6 calls diffoscope.comparators.xz.XzContainer 0.099s 514 calls diffoscope.comparators.deb.DebTarContainer 0.016s 2 calls diffoscope.comparators.gzip.GzipContainer 0.006s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.005s) 0.005s 5 calls linediff ## has_same_content_as (total time: 0.009s) 0.007s 1 call abc.DebDataTarFile 0.001s 4 calls abc.DebFile 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.XzFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.PdfFile 0.000s 1 call abc.GzipFile ## main (total time: 28.296s) 28.271s 2 calls outputs 0.025s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## output (total time: 0.207s) 0.192s 1 call html 0.008s 1 call text 0.007s 1 call json ## recognizes (total time: 0.104s) 0.046s 584 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.021s 364 calls diffoscope.comparators.utils.archive.ArchiveMember 0.009s 216 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.061s) 0.061s 16 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 28.653s CPU time consumed: 36.760s Wed Apr 24 21:36:00 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Apr 24 21:36:00 UTC 2024 E: librostlab failed to build reproducibly in trixie on armhf. Wed Apr 24 21:36:02 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Apr 24 21:36:02 UTC 2024 I: Submitting 12K b1/librostlab_1.0.20-13.1_armhf.buildinfo.asc Wed Apr 24 21:36:03 UTC 2024 I: Submitting 12K b2/librostlab_1.0.20-13.1_armhf.buildinfo.asc Wed Apr 24 21:36:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 24 21:36:04 UTC 2024 I: Done submitting .buildinfo files. Wed Apr 24 21:36:04 UTC 2024 I: Removing signed librostlab_1.0.20-13.1_armhf.buildinfo.asc files: removed './b1/librostlab_1.0.20-13.1_armhf.buildinfo.asc' removed './b2/librostlab_1.0.20-13.1_armhf.buildinfo.asc'