Sun Oct 20 02:32:36 UTC 2024 I: starting to build librcsb-core-wrapper/trixie/armhf on jenkins on '2024-10-20 02:32' Sun Oct 20 02:32:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_31/7648/console.log Sun Oct 20 02:32:36 UTC 2024 I: Downloading source for trixie/librcsb-core-wrapper=1.005-12 --2024-10-20 02:32:36-- http://deb.debian.org/debian/pool/main/libr/librcsb-core-wrapper/librcsb-core-wrapper_1.005-12.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2575 (2.5K) [text/prs.lines.tag] Saving to: ‘librcsb-core-wrapper_1.005-12.dsc’ 0K .. 100% 311M=0s 2024-10-20 02:32:36 (311 MB/s) - ‘librcsb-core-wrapper_1.005-12.dsc’ saved [2575/2575] Sun Oct 20 02:32:36 UTC 2024 I: librcsb-core-wrapper_1.005-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librcsb-core-wrapper Binary: librcsb-core-wrapper0t64, librcsb-core-wrapper0-dev, librcsb-core-wrapper-doc, python3-corepywrap Architecture: any all Version: 1.005-12 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/librcsb-core-wrapper Vcs-Git: https://salsa.debian.org/med-team/librcsb-core-wrapper.git Testsuite: autopkgtest-pkg-python Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), doxygen, graphviz, dh-sequence-python3, libboost-python-dev, libxerces-c-dev, python3-dev, python3-setuptools, libtool, libtool-bin, bison, flex Package-List: librcsb-core-wrapper-doc deb doc optional arch=all librcsb-core-wrapper0-dev deb libdevel optional arch=any librcsb-core-wrapper0t64 deb libs optional arch=any python3-corepywrap deb python optional arch=any Checksums-Sha1: f59c664981896bac055ec340d7e92406220cc5a1 1835295 librcsb-core-wrapper_1.005.orig.tar.gz d34bc3ad1cb136f147323dae84620ace9db95f8e 21380 librcsb-core-wrapper_1.005-12.debian.tar.xz Checksums-Sha256: 345c40aad147bd551b20b1582602ae465bdf485ce1fe351632509a3cf75f0be2 1835295 librcsb-core-wrapper_1.005.orig.tar.gz 14b1753b71b75b5c908fa050dbee418907d79c4456959e32710a9ce2b14ff1b8 21380 librcsb-core-wrapper_1.005-12.debian.tar.xz Files: 871203f9ce4b6a1bfb71a565073a5731 1835295 librcsb-core-wrapper_1.005.orig.tar.gz fc08bd057e7d356069ef31e4426e5a2f 21380 librcsb-core-wrapper_1.005-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbu1oARHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqjTBAAqxG0giIjP0lMaxP6NHTkcbrpfHdEXFB+ LG6lZ1yerm7XG76l2ijmxmLRzfjkOtQgZuzAG2RhXOjuvLCeuHHJP75XD7/CPw8/ HoJ9YbBMGIlysu2buBS2H7LYyFq2dlhyEUf3Wu2kxsuaRY8nuuaV08iKvqmYeaJ6 OSDJdlWx8NswZKoamocbz5jECMavVmwpA8g3lmrS/O8DZFEbpmcweb1zH0MErIyd EX1Ivywb/p/AHtO0kjxb0ywuXYpt8RDpiZPTo38aI2ZsijVOw1nKicON0cpJS5I2 7AlmQBPV/2Qi+zfgnAoPXuJrugODzEsGZORsEvIgkfRBb+Qye/vIGMRE20+7NltV 6wvUiFJr0+GgFdiWvzcrnbz9NLDUDx4Vd458ht8cHlaq31CPQxMv9QrIuWRUaxwU 7WBJbh9CLR36OZ+H4LTF6eSyrd2XT44i1oCFuyReK37LZ+nudl3OI8dFf7yoNwAr JtFFAAc8u3WbtY2o3/7FVM5d9lwxTJMizfZuSp+NxWtmNHnCyLCvVOl9fB8+xFSH fDYR94+kcZ6b+2Qf7VEQd4Vt7a9P6qdQYJpVTRZivSVaaWfIe8YNd3MUWw05Tv7f kQiOLjXzfeqjkgoe2mLV7v9JtBrBzvYrlS/Q+UUWISUYjXIfQUuGGwR/I46s1NNW OAQ5o/sSE+4= =90SP -----END PGP SIGNATURE----- Sun Oct 20 02:32:36 UTC 2024 I: Checking whether the package is not for us Sun Oct 20 02:32:36 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Sun Oct 20 02:32:36 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Sun Oct 20 02:44:44 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 19 14:32:44 -12 2024 I: pbuilder-time-stamp: 1729391564 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librcsb-core-wrapper_1.005-12.dsc] I: copying [./librcsb-core-wrapper_1.005.orig.tar.gz] I: copying [./librcsb-core-wrapper_1.005-12.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Sep 21 14:21:52 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./librcsb-core-wrapper_1.005-12.dsc: no acceptable signature found dpkg-source: info: extracting librcsb-core-wrapper in librcsb-core-wrapper-1.005 dpkg-source: info: unpacking librcsb-core-wrapper_1.005.orig.tar.gz dpkg-source: info: unpacking librcsb-core-wrapper_1.005-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying wrapper-module dpkg-source: info: applying rm-duplicate-module dpkg-source: info: applying bash dpkg-source: info: applying unistd dpkg-source: info: applying devnull-log dpkg-source: info: applying docs dpkg-source: info: applying objectfiles dpkg-source: info: applying parallel-build dpkg-source: info: applying setup.py.in dpkg-source: info: applying hardening dpkg-source: info: applying spelling dpkg-source: info: applying exit-in-shlib dpkg-source: info: applying make_test_target dpkg-source: info: applying regcomp_cert_fix.patch dpkg-source: info: applying platformcheck.patch dpkg-source: info: applying xerces32.patch dpkg-source: info: applying gcc-8.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying generated-includes dpkg-source: info: applying INSTALL-is-cifinstall.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8075/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='070fa4f5766c48bdaa33a5893af9fedb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8075' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/pbuilderrc_kfIg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/b1 --logfile b1/build.log librcsb-core-wrapper_1.005-12.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8075/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), doxygen, graphviz, dh-sequence-python3, libboost-python-dev, libxerces-c-dev, python3-dev, python3-setuptools, libtool, libtool-bin, bison, flex dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19520 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libxerces-c-dev; however: Package libxerces-c-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on libtool; however: Package libtool is not installed. pbuilder-satisfydepends-dummy depends on libtool-bin; however: Package libtool-bin is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} icu-devtools{a} intltool-debian{a} libabsl20230802{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcurl3t64-gnutls{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu-dev{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} libldap-2.5-0{a} liblerc4{a} libllvm16t64{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtool-bin{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2t64{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libfl-dev libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 125 MB of archives. After unpacking 622 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf flex armhf 2.6.4-8.2+b2 [406 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.6-1 [800 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.6-1 [1812 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 14 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.6-1 [1817 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.6-1 [669 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 24 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf bison armhf 2:3.8.2+dfsg-1+b2 [1138 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.3.0-1 [36.5 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.20.2-1 [10.3 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240824 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20240808-1 [77.9 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libllvm16t64 armhf 1:16.0.6-27+b1 [20.6 MB] Get: 68 http://deb.debian.org/debian trixie/main armhf libclang-cpp16t64 armhf 1:16.0.6-27+b1 [9877 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libclang1-16t64 armhf 1:16.0.6-27+b1 [5543 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libfmt9 armhf 9.1.0+ds1-2 [105 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf doxygen armhf 1.9.8+ds-2+b1 [4461 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libcdt5 armhf 2.42.4-2 [37.6 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libcgraph6 armhf 2.42.4-2 [56.5 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libaom3 armhf 3.9.1-1 [1558 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libdav1d7 armhf 1.4.3-1 [256 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libabsl20230802 armhf 20230802.1-4 [432 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libgav1-1 armhf 0.19.0-2+b1 [299 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf librav1e0.7 armhf 0.7.1-7+b1 [563 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libsvtav1enc2 armhf 2.2.1+dfsg-2 [937 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libyuv0 armhf 0.0.1888.20240710-3 [85.8 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libavif16 armhf 1.1.1-1 [103 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libheif-plugin-dav1d armhf 1.18.2-2 [10.5 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libde265-0 armhf 1.0.15-1+b2 [145 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libheif-plugin-libde265 armhf 1.18.2-2 [13.3 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libheif1 armhf 1.18.2-2 [262 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b1 [30.7 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.15-1 [70.0 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.82.1-1 [1325 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 9.0.0-1 [417 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.1-1+b1 [11.8 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libxpm4 armhf 1:3.5.17-1+b1 [50.0 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libgd3 armhf 2.3.3-12 [104 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libgts-0.7-5t64 armhf 0.7.6+darcs121130-5.2 [132 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libltdl7 armhf 2.4.7-7+b1 [390 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libpango-1.0-0 armhf 1.54.0+ds-2 [198 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-2 [47.5 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-2 [31.1 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libpathplan4 armhf 2.42.4-2 [39.6 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libgvc6 armhf 2.42.4-2 [581 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libgvpr2 armhf 2.42.4-2 [168 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf liblab-gamut1 armhf 2.42.4-2 [199 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1+b1 [50.1 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1+b1 [31.7 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libxt6t64 armhf 1:1.2.1-1.2 [159 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3+b2 [50.9 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libxaw7 armhf 2:1.0.14-1+b2 [165 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf graphviz armhf 2.42.4-2 [501 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-5 [185 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-3.2 [10.6 MB] Get: 141 http://deb.debian.org/debian trixie/main armhf libboost-python1.83.0 armhf 1.83.0-3.2 [294 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.6-1 [1847 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.3-1 [139 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.6-1 [3809 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.12.6-1 [9952 B] Get: 147 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.6-1 [506 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.12.6-1 [26.1 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf libboost-python1.83-dev armhf 1.83.0-3.2 [321 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libboost-python-dev armhf 1.83.0.2+b2 [3884 B] Get: 154 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3 [163 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.63.0-1 [62.9 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.4.0-1 [55.1 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.6.0-1 [118 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.6.0-1 [17.1 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-7 [199 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.10.1-2 [308 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-5 [10.1 MB] Get: 166 http://deb.debian.org/debian trixie/main armhf libtool-bin armhf 2.4.7-7+b1 [436 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3 [744 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf libxerces-c-dev armhf 3.2.4+debian-1.3 [1551 kB] Fetched 125 MB in 3s (41.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19520 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.2+b2_armhf.deb ... Unpacking flex (2.6.4-8.2+b2) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.6-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.6-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_armhf.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:armhf (3.12.6-1) ... Setting up libexpat1:armhf (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20023 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_armhf.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... 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Setting up libboost-python1.83.0 (1.83.0-3.2) ... Setting up libpixman-1-0:armhf (0.42.2-1+b1) ... Setting up libsharpyuv0:armhf (1.4.0-0.1) ... Setting up libaom3:armhf (3.9.1-1) ... Setting up libxau6:armhf (1:1.0.9-1+b1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up libkeyutils1:armhf (1.6.3-3) ... Setting up libboost1.83-dev:armhf (1.83.0-3.2) ... Setting up libxcb1:armhf (1.17.0-2) ... Setting up libicu72:armhf (72.1-5) ... Setting up liblerc4:armhf (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libdatrie1:armhf (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libxcb-render0:armhf (1.17.0-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b4) ... Setting up libedit2:armhf (3.1-20240808-1) ... Setting up liblab-gamut1:armhf (2.42.4-2) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.63.0-1) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:armhf (1.17.0-2) ... Setting up libcom-err2:armhf (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 20 02:34:18 UTC 2024. Universal Time is now: Sun Oct 20 02:34:18 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:armhf (2.82.1-1) ... No schema files found: doing nothing. Setting up libexpat1-dev:armhf (2.6.3-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libsvtav1enc2:armhf (2.2.1+dfsg-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libpathplan4:armhf (2.42.4-2) ... Setting up libfribidi0:armhf (1.0.15-1) ... Setting up libimagequant0:armhf (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up icu-devtools (72.1-5) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libltdl7:armhf (2.4.7-7+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.4.0-1) ... Setting up libwebp7:armhf (1.4.0-0.1) ... Setting up libfmt9:armhf (9.1.0+ds1-2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b2) ... Setting up libdav1d7:armhf (1.4.3-1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:armhf (4.5.1+git230720-5) ... Setting up librav1e0.7:armhf (0.7.1-7+b1) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up bison (2:3.8.2+dfsg-1+b2) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libabsl20230802:armhf (20230802.1-4) ... Setting up libngtcp2-16:armhf (1.6.0-1) ... Setting up libgts-0.7-5t64:armhf (0.7.6+darcs121130-5.2) ... Setting up libcdt5:armhf (2.42.4-2) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libcgraph6:armhf (2.42.4-2) ... Setting up libssh2-1t64:armhf (1.11.0-7) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libde265-0:armhf (1.0.15-1+b2) ... Setting up libyuv0:armhf (0.0.1888.20240710-3) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:armhf (72.1-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.6.0-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:armhf (2:1.0.10-1+b1) ... Setting up flex (2.6.4-8.2+b2) ... Setting up gettext (0.22.5-2) ... Setting up libxpm4:armhf (1:3.5.17-1+b1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxext6:armhf (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libllvm16t64:armhf (1:16.0.6-27+b1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libgav1-1:armhf (0.19.0-2+b1) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:armhf (2.42.4-2) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:armhf (9.0.0-1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libsm6:armhf (2:1.2.3-1+b1) ... Setting up libtool-bin (2.4.7-7+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:armhf (1.1.1-1) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:armhf (1.54.0+ds-2) ... Setting up libcurl3t64-gnutls:armhf (8.10.1-2) ... Setting up libclang1-16t64 (1:16.0.6-27+b1) ... Setting up libxerces-c3.2t64:armhf (3.2.4+debian-1.3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp16t64 (1:16.0.6-27+b1) ... Setting up libcairo2:armhf (1.18.2-2) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libxerces-c-dev:armhf (3.2.4+debian-1.3) ... Setting up libraqm0:armhf (0.10.1-1+b1) ... Setting up libxt6t64:armhf (1:1.2.1-1.2) ... Setting up libnsl2:armhf (1.3.0-3+b2) ... Setting up libpangoft2-1.0-0:armhf (1.54.0+ds-2) ... Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-2) ... Setting up libxmu6:armhf (2:1.1.3-3+b2) ... Setting up libpython3.12-stdlib:armhf (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libxaw7:armhf (2:1.0.14-1+b2) ... Setting up libpython3.12t64:armhf (3.12.6-1) ... Setting up libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:armhf (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3.12-dev (3.12.6-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:armhf (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-dev (3.12.6-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up dh-python (6.20240824) ... Setting up libheif-plugin-dav1d:armhf (1.18.2-2) ... Setting up libheif-plugin-libde265:armhf (1.18.2-2) ... Setting up libheif1:armhf (1.18.2-2) ... Setting up libgd3:armhf (2.3.3-12) ... Setting up libgvc6 (2.42.4-2) ... Setting up graphviz (2.42.4-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/librcsb-core-wrapper-1.005/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librcsb-core-wrapper_1.005-12_source.changes dpkg-buildpackage: info: source package librcsb-core-wrapper dpkg-buildpackage: info: source version 1.005-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005' dh_auto_clean make -j3 clean make[2]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005' rm -rf docs ------------------------------------------------------------ **** Cleaning etc **** ------------------------------------------------------------ ------------------------------------------------------------ **** Cleaning common **** ------------------------------------------------------------ rm -rf rcsb ------------------------------------------------------------ **** Cleaning test results in dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/dict-obj-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/common' ------------------------------------------------------------ **** Cleaning tables **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/tables' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Cleaning test results in pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/pdbml-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/pdbml-parser' make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/tables' ------------------------------------------------------------ **** Cleaning regex **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/regex' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/regex' ------------------------------------------------------------ **** Cleaning cif-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file' ------------------------------------------------------------ **** Cleaning cif-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-parser' ------------------------------------------------------------ **** Cleaning cif-file-util **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file-util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file-util' ------------------------------------------------------------ **** Cleaning dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/dict-obj-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Cleaning pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/pdbml-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/pdbml-parser' ------------------------------------------------------------ **** Cleaning cctbx **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cctbx' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cctbx' make[2]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005' rm -rf wrapper/python/build make[1]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005' dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005' sh -c '\ export PIC=-fPIC; \ export WWPDB_XERCESC_INC=/usr/include; \ export WWPDB_XERCESC_LIB_DIR=/usr/lib; \ export WWPDB_XERCESC_LIB=xerces-c; \ ( cd ./util; ./compile.sh ); \ libtool --mode=link g++ -version-info 0:1:0 -rpath /usr/lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -l${WWPDB_XERCESC_LIB} -o lib/librcsb-core-wrapper.la lib/*.lo' ------------------------------------------------------------ **** Making etc **** ------------------------------------------------------------ Using platform specific configuration for system: gnu4 Platform configuration done. ------------------------------------------------------------ **** Making common **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/common' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbFile.C -fPIC -DPIC -o ./obj/.libs/RcsbFile.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbPlatform.C -fPIC -DPIC -o ./obj/.libs/RcsbPlatform.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/BlockIO.C -fPIC -DPIC -o ./obj/.libs/BlockIO.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Serializer.C -fPIC -DPIC -o ./obj/.libs/Serializer.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenString.C -o ./obj/GenString.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifString.C -o ./obj/CifString.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenString.C -fPIC -DPIC -o ./obj/.libs/GenString.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifString.C -fPIC -DPIC -o ./obj/.libs/CifString.o src/GenString.C: In static member function 'static bool String::IsNumber(const std::string&)': src/GenString.C:539:12: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 539 | catch (exception) | ^~~~~~~~~ libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifString.C -o ./obj/CifString.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenString.C -o ./obj/GenString.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenCont.C -fPIC -DPIC -o ./obj/.libs/GenCont.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Exceptions.C -fPIC -DPIC -o ./obj/.libs/Exceptions.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DataInfo.C -fPIC -DPIC -o ./obj/.libs/DataInfo.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_vector.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_ptr_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_ptr_vector.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o >/dev/null 2>&1 a - RcsbPlatform.o a - RcsbFile.o a - BlockIO.o a - Serializer.o a - GenString.o a - CifString.o a - GenCont.o a - Exceptions.o a - DataInfo.o a - mapped_vector.o a - mapped_ptr_vector.o cp -f -t ../lib ./obj/RcsbPlatform.o ./obj/RcsbFile.o ./obj/BlockIO.o ./obj/Serializer.o ./obj/GenString.o ./obj/CifString.o ./obj/GenCont.o ./obj/Exceptions.o ./obj/DataInfo.o ./obj/mapped_vector.o ./obj/mapped_ptr_vector.o ./obj/RcsbPlatform.lo ./obj/RcsbFile.lo ./obj/BlockIO.lo ./obj/Serializer.lo ./obj/GenString.lo ./obj/CifString.lo ./obj/GenCont.lo ./obj/Exceptions.lo ./obj/DataInfo.lo ./obj/mapped_vector.lo ./obj/mapped_ptr_vector.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/RcsbPlatform.o ./obj/.libs/RcsbFile.o ./obj/.libs/BlockIO.o ./obj/.libs/Serializer.o ./obj/.libs/GenString.o ./obj/.libs/CifString.o ./obj/.libs/GenCont.o ./obj/.libs/Exceptions.o ./obj/.libs/DataInfo.o ./obj/.libs/mapped_vector.o ./obj/.libs/mapped_ptr_vector.o true lib/common.a lib/common.a is up to date. ../etc/cifinstall -m 0444 ./lib/common.a ../lib x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/common' ------------------------------------------------------------ **** Making tables **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/tables' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TTable.C -o ./obj/TTable.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ITTable.C -fPIC -DPIC -o ./obj/.libs/ITTable.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ISTable.C -fPIC -DPIC -o ./obj/.libs/ISTable.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TTable.C -fPIC -DPIC -o ./obj/.libs/TTable.o src/ISTable.C: In member function 'bool ISTable::IsColumnPresent(const std::string&)': src/ISTable.C:228:12: warning: catching polymorphic type 'class NotFoundException' by value [-Wcatch-value=] 228 | catch (NotFoundException) | ^~~~~~~~~~~~~~~~~ src/ISTable.C: In member function 'unsigned int ISTable::InsertRow(unsigned int, const std::vector >&)': src/ISTable.C:649:20: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 649 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ISTable.C: In function 'std::ostream& operator<<(std::ostream&, const ISTable&)': src/ISTable.C:1826:20: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 1826 | catch (out_of_range) | ^~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::AppendToColumn(unsigned int, const std::string&)': src/ITTable.C:169:16: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 169 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::ClearColumn(unsigned int)': src/ITTable.C:244:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 244 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'unsigned int ITTable::InsertRow(unsigned int, const std::vector >&)': src/ITTable.C:326:16: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 326 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::FillRow(unsigned int, const std::vector >&)': src/ITTable.C:362:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 362 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::ClearRow(unsigned int)': src/ITTable.C:439:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 439 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::FillColumn(unsigned int, std::vector >::const_iterator, std::vector >::const_iterator)': src/ITTable.C:1645:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 1645 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'void ITTable::AppendToColumn(unsigned int, const std::vector >&)': src/ITTable.C:1714:16: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 1714 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function 'int ITTable::UpdateCell(const std::string&, unsigned int, unsigned int)': src/ITTable.C:1759:12: warning: catching polymorphic type 'class AlreadyExistsException' by value [-Wcatch-value=] 1759 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TTable.C -o ./obj/TTable.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TableFile.C -fPIC -DPIC -o ./obj/.libs/TableFile.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o >/dev/null 2>&1 src/TableFile.C: In member function 'std::string TableFile::GetFirstBlockName()': src/TableFile.C:474:12: warning: catching polymorphic type 'class std::out_of_range' by value [-Wcatch-value=] 474 | catch (out_of_range) | ^~~~~~~~~~~~ libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o >/dev/null 2>&1 a - TTable.o a - ITTable.o a - ISTable.o a - TableFile.o cp -f -t ../lib ./obj/TTable.o ./obj/ITTable.o ./obj/ISTable.o ./obj/TableFile.o ./obj/TTable.lo ./obj/ITTable.lo ./obj/ISTable.lo ./obj/TableFile.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/TTable.o ./obj/.libs/ITTable.o ./obj/.libs/ISTable.o ./obj/.libs/TableFile.o true lib/tables.a lib/tables.a is up to date. ../etc/cifinstall -m 0444 ./lib/tables.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - mapped_ptr_vector.o x - mapped_vector.o x - TTable.o x - ITTable.o x - ISTable.o x - TableFile.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/tables' ------------------------------------------------------------ **** Making regex **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/regex' libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -fPIC -DPIC -o ./obj/.libs/regcomp.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -fPIC -DPIC -o ./obj/.libs/regexec.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -fPIC -DPIC -o ./obj/.libs/regerror.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o >/dev/null 2>&1 libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -fPIC -DPIC -o ./obj/.libs/regfree.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o >/dev/null 2>&1 libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o >/dev/null 2>&1 libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o >/dev/null 2>&1 a - regcomp.o a - regexec.o a - regerror.o a - regfree.o cp -f -t ../lib ./obj/regcomp.o ./obj/regexec.o ./obj/regerror.o ./obj/regfree.o ./obj/regcomp.lo ./obj/regexec.lo ./obj/regerror.lo ./obj/regfree.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/regcomp.o ./obj/.libs/regexec.o ./obj/.libs/regerror.o ./obj/.libs/regfree.o true lib/regex.a lib/regex.a is up to date. ../etc/cifinstall -m 0444 ./lib/regex.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regexec.o x - regerror.o x - regfree.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/regex' ------------------------------------------------------------ **** Making cif-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ParentChild.C -fPIC -DPIC -o ./obj/.libs/ParentChild.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFile.C -fPIC -DPIC -o ./obj/.libs/CifFile.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DicFile.C -fPIC -DPIC -o ./obj/.libs/DicFile.o src/CifFile.C: In member function 'int CifFile::CheckCellRange(const std::string&, const std::string&, const std::vector >&, const std::vector >&)': src/CifFile.C:2503:12: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 2503 | catch (exception) | ^~~~~~~~~ libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParentChild.C -fPIC -DPIC -o ./obj/.libs/CifParentChild.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifDataInfo.C -fPIC -DPIC -o ./obj/.libs/CifDataInfo.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifExcept.C -fPIC -DPIC -o ./obj/.libs/CifExcept.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o >/dev/null 2>&1 a - CifFile.o a - DicFile.o a - ParentChild.o a - CifParentChild.o a - CifDataInfo.o a - CifExcept.o cp -f -t ../lib ./obj/CifFile.o ./obj/DicFile.o ./obj/ParentChild.o ./obj/CifParentChild.o ./obj/CifDataInfo.o ./obj/CifExcept.o ./obj/CifFile.lo ./obj/DicFile.lo ./obj/ParentChild.lo ./obj/CifParentChild.lo ./obj/CifDataInfo.lo ./obj/CifExcept.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFile.o ./obj/.libs/DicFile.o ./obj/.libs/ParentChild.o ./obj/.libs/CifParentChild.o ./obj/.libs/CifDataInfo.o ./obj/.libs/CifExcept.o true lib/cif-file.a lib/cif-file.a is up to date. ../etc/cifinstall -m 0444 ./lib/cif-file.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFile.o x - DicFile.o x - ParentChild.o x - CifParentChild.o x - CifDataInfo.o x - CifExcept.o a - BlockIO.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifParentChild.o a - CifString.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file' ------------------------------------------------------------ **** Making cif-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-parser' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o sh -c 'cd ./src; bison -d -v -l -p cifparser_ ../src/CifParser.y' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParserBase.C -o ./obj/CifParserBase.o mv src/CifParser.tab.c src/CifParser.c mv src/CifParser.tab.h src/CifParser.h sed -i -e's/\.tab\.h/\.h/' src/CifParser.c libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParser.c -o obj/CifParser.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileReadDef.C -fPIC -DPIC -o ./obj/.libs/CifFileReadDef.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParserBase.C -fPIC -DPIC -o ./obj/.libs/CifParserBase.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParser.c -fPIC -DPIC -o obj/.libs/CifParser.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParser.c -o obj/CifParser.o >/dev/null 2>&1 sh -c 'cd ./src; bison -d -v -l -p dicparser_ ../src/DICParser.y' mv src/DICParser.tab.c src/DICParser.c mv src/DICParser.tab.h src/DICParser.h sed -i -e's/\.tab\.h/\.h/' src/DICParser.c libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParser.c -o obj/DICParser.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParser.c -fPIC -DPIC -o obj/.libs/DICParser.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParser.c -o obj/DICParser.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParserBase.C -o ./obj/DICParserBase.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParserBase.C -fPIC -DPIC -o ./obj/.libs/DICParserBase.o flex -Cfr -L -Pcifparser_ -t ./src/CifScanner.l > ./src/CifScanner.c libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/CifScanner.c -o ./obj/CifScanner.o src/DICParserBase.C: In member function 'void DICParser::ProcessDataBlockName()': src/DICParserBase.C:1283:7: warning: comparing the result of pointer addition '(Glob_dataBlockNameDIC + 5)' and NULL [-Waddress] 1283 | if (&(Glob_dataBlockNameDIC)[5] && (strlen(&(Glob_dataBlockNameDIC)[5])>0)) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/CifScanner.c -fPIC -DPIC -o ./obj/.libs/CifScanner.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/CifScanner.c -o ./obj/CifScanner.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifParserBase.C -o ./obj/CifParserBase.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifScannerBase.C -o ./obj/CifScannerBase.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifScannerBase.C -fPIC -DPIC -o ./obj/.libs/CifScannerBase.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifScannerBase.C -o ./obj/CifScannerBase.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICParserBase.C -o ./obj/DICParserBase.o >/dev/null 2>&1 flex -Cfr -L -Pdicparser_ -t ./src/DICScanner.l > ./src/DICScanner.c libtool --mode=compile gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/DICScanner.c -o ./obj/DICScanner.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/DICScanner.c -fPIC -DPIC -o ./obj/.libs/DICScanner.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICScannerBase.C -o ./obj/DICScannerBase.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICScannerBase.C -fPIC -DPIC -o ./obj/.libs/DICScannerBase.o libtool: compile: gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c ./src/DICScanner.c -o ./obj/DICScanner.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DICScannerBase.C -o ./obj/DICScannerBase.o >/dev/null 2>&1 a - CifFileReadDef.o a - CifScanner.o a - CifScannerBase.o a - CifParser.o a - CifParserBase.o a - DICScanner.o a - DICScannerBase.o a - DICParser.o a - DICParserBase.o cp -f -t ../lib ./obj/CifFileReadDef.o ./obj/CifScanner.o ./obj/CifScannerBase.o ./obj/CifParser.o ./obj/CifParserBase.o ./obj/DICScanner.o ./obj/DICScannerBase.o ./obj/DICParser.o ./obj/DICParserBase.o ./obj/CifFileReadDef.lo ./obj/CifScanner.lo ./obj/CifScannerBase.lo ./obj/CifParser.lo ./obj/CifParserBase.lo ./obj/DICScanner.lo ./obj/DICScannerBase.lo ./obj/DICParser.lo ./obj/DICParserBase.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFileReadDef.o ./obj/.libs/CifScanner.o ./obj/.libs/CifScannerBase.o ./obj/.libs/CifParser.o ./obj/.libs/CifParserBase.o ./obj/.libs/DICScanner.o ./obj/.libs/DICScannerBase.o ./obj/.libs/DICParser.o ./obj/.libs/DICParserBase.o true lib/cifparse-obj.a lib/cifparse-obj.a is up to date. ../etc/cifinstall -m 0444 ./lib/cifparse-obj.a ../lib x - BlockIO.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifParentChild.o x - CifString.o x - DataInfo.o x - DicFile.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFileReadDef.o x - CifScanner.o x - CifScannerBase.o x - CifParser.o x - CifParserBase.o x - DICScanner.o x - DICScannerBase.o x - DICParser.o x - DICParserBase.o a - BlockIO.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib rm src/DICParser.h src/CifParser.h make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-parser' ------------------------------------------------------------ **** Making cif-file-util **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file-util' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileUtil.C -o ./obj/CifFileUtil.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifCorrector.C -o ./obj/CifCorrector.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileUtil.C -fPIC -DPIC -o ./obj/.libs/CifFileUtil.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifCorrector.C -fPIC -DPIC -o ./obj/.libs/CifCorrector.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifFileUtil.C -o ./obj/CifFileUtil.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/CifCorrector.C -o ./obj/CifCorrector.o >/dev/null 2>&1 a - CifFileUtil.o a - CifCorrector.o cp -f -t ../lib ./obj/CifFileUtil.o ./obj/CifCorrector.o ./obj/CifFileUtil.lo ./obj/CifCorrector.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFileUtil.o ./obj/.libs/CifCorrector.o true lib/cif-file-util.a lib/cif-file-util.a is up to date. ../etc/cifinstall -m 0444 ./lib/cif-file-util.a ../lib x - BlockIO.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifFileReadDef.o x - CifParentChild.o x - CifParser.o x - CifParserBase.o x - CifScanner.o x - CifScannerBase.o x - CifString.o x - DICParser.o x - DICParserBase.o x - DICScanner.o x - DICScannerBase.o x - DataInfo.o x - DicFile.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFileUtil.o x - CifCorrector.o a - BlockIO.o a - CifCorrector.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifFileUtil.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cif-file-util' ------------------------------------------------------------ **** Making dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/dict-obj-file' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjContInfo.C -o ./obj/DictObjContInfo.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjCont.C -o ./obj/DictObjCont.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFile.C -o ./obj/DictObjFile.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjContInfo.C -fPIC -DPIC -o ./obj/.libs/DictObjContInfo.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjCont.C -fPIC -DPIC -o ./obj/.libs/DictObjCont.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFile.C -fPIC -DPIC -o ./obj/.libs/DictObjFile.o src/DictObjCont.C: In member function 'void DictObjCont::PrintContainers(const std::string&, const std::string&, const ObjContInfo&)': src/DictObjCont.C:640:16: warning: catching polymorphic type 'class NotFoundException' by value [-Wcatch-value=] 640 | catch (NotFoundException) | ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjContInfo.C -o ./obj/DictObjContInfo.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFile.C -o ./obj/DictObjFile.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjCont.C -o ./obj/DictObjCont.o >/dev/null 2>&1 libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictDataInfo.C -o ./obj/DictDataInfo.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictDataInfo.C -fPIC -DPIC -o ./obj/.libs/DictDataInfo.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictParentChild.C -o ./obj/DictParentChild.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictParentChild.C -fPIC -DPIC -o ./obj/.libs/DictParentChild.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictDataInfo.C -o ./obj/DictDataInfo.o >/dev/null 2>&1 g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFileCreator.C -o obj/DictObjFileCreator.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFileReader.C -o obj/DictObjFileReader.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictParentChild.C -o ./obj/DictParentChild.o >/dev/null 2>&1 g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -c src/DictObjFileSelectiveReader.C -o obj/DictObjFileSelectiveReader.o a - DictObjContInfo.o a - DictObjCont.o a - DictObjFile.o a - DictDataInfo.o a - DictParentChild.o cp -f -t ../lib ./obj/DictObjContInfo.o ./obj/DictObjCont.o ./obj/DictObjFile.o ./obj/DictDataInfo.o ./obj/DictParentChild.o ./obj/DictObjContInfo.lo ./obj/DictObjCont.lo ./obj/DictObjFile.lo ./obj/DictDataInfo.lo ./obj/DictParentChild.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/DictObjContInfo.o ./obj/.libs/DictObjCont.o ./obj/.libs/DictObjFile.o ./obj/.libs/DictDataInfo.o ./obj/.libs/DictParentChild.o true lib/dict-obj-file.a lib/dict-obj-file.a is up to date. ../etc/cifinstall -m 0444 ./lib/dict-obj-file.a ../lib x - BlockIO.o x - CifCorrector.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifFileReadDef.o x - CifFileUtil.o x - CifParentChild.o x - CifParser.o x - CifParserBase.o x - CifScanner.o x - CifScannerBase.o x - CifString.o x - DICParser.o x - DICParserBase.o x - DICScanner.o x - DICScannerBase.o x - DataInfo.o x - DicFile.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - DictObjContInfo.o x - DictObjCont.o x - DictObjFile.o x - DictDataInfo.o x - DictParentChild.o a - BlockIO.o a - CifCorrector.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifFileUtil.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - DictDataInfo.o a - DictObjCont.o a - DictObjContInfo.o a - DictObjFile.o a - DictParentChild.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -w -static obj/DictObjFileCreator.o ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lm -o ./bin/DictObjFileCreator g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -w -static obj/DictObjFileReader.o ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lm -o ./bin/DictObjFileReader g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -w -static obj/DictObjFileSelectiveReader.o ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lm -o ./bin/DictObjFileSelectiveReader make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/dict-obj-file' ------------------------------------------------------------ **** Making pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/pdbml-parser' libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlFileUtil.C -o ./obj/PdbMlFileUtil.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlParserHandler.C -o ./obj/PdbMlParserHandler.o libtool --mode=compile g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/misc_util.C -o ./obj/misc_util.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlFileUtil.C -fPIC -DPIC -o ./obj/.libs/PdbMlFileUtil.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/misc_util.C -fPIC -DPIC -o ./obj/.libs/misc_util.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlParserHandler.C -fPIC -DPIC -o ./obj/.libs/PdbMlParserHandler.o libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlFileUtil.C -o ./obj/PdbMlFileUtil.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/misc_util.C -o ./obj/misc_util.o >/dev/null 2>&1 libtool: compile: g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/PdbMlParserHandler.C -o ./obj/PdbMlParserHandler.o >/dev/null 2>&1 g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -fPIC -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include -c src/xml2mmcif.C -o obj/xml2mmcif.o a - PdbMlFileUtil.o a - PdbMlParserHandler.o a - misc_util.o cp -f -t ../lib ./obj/PdbMlFileUtil.o ./obj/PdbMlParserHandler.o ./obj/misc_util.o ./obj/PdbMlFileUtil.lo ./obj/PdbMlParserHandler.lo ./obj/misc_util.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/PdbMlFileUtil.o ./obj/.libs/PdbMlParserHandler.o ./obj/.libs/misc_util.o true lib/pdbml-parser.a lib/pdbml-parser.a is up to date. ../etc/cifinstall -m 0444 ./lib/pdbml-parser.a ../lib x - BlockIO.o x - CifCorrector.o x - CifDataInfo.o x - CifExcept.o x - CifFile.o x - CifFileReadDef.o x - CifFileUtil.o x - CifParentChild.o x - CifParser.o x - CifParserBase.o x - CifScanner.o x - CifScannerBase.o x - CifString.o x - DICParser.o x - DICParserBase.o x - DICScanner.o x - DICScannerBase.o x - DataInfo.o x - DicFile.o x - DictDataInfo.o x - DictObjCont.o x - DictObjContInfo.o x - DictObjFile.o x - DictParentChild.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - ParentChild.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - PdbMlFileUtil.o x - PdbMlParserHandler.o x - misc_util.o a - BlockIO.o a - CifCorrector.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifFileReadDef.o a - CifFileUtil.o a - CifParentChild.o a - CifParser.o a - CifParserBase.o a - CifScanner.o a - CifScannerBase.o a - CifString.o a - DICParser.o a - DICParserBase.o a - DICScanner.o a - DICScannerBase.o a - DataInfo.o a - DicFile.o a - DictDataInfo.o a - DictObjCont.o a - DictObjContInfo.o a - DictObjFile.o a - DictParentChild.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - PdbMlFileUtil.o a - PdbMlParserHandler.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - misc_util.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib g++ -Wl,-z,relro -Wl,-z,now -w -L/usr/lib obj/xml2mmcif.o ../lib/pdbml-parser.a ../lib/dict-obj-file.a ../lib/cif-file-util.a ../lib/cif-file.a ../lib/cifparse-obj.a ../lib/tables.a ../lib/common.a ../lib/regex.a -lxerces-c -lm -o ./bin/xml2mmcif make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/pdbml-parser' ------------------------------------------------------------ **** Making cctbx **** ------------------------------------------------------------ make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cctbx' make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/cctbx' libtool: link: g++ -fPIC -DPIC -shared lib/.libs/BlockIO.o lib/.libs/CifCorrector.o lib/.libs/CifDataInfo.o lib/.libs/CifExcept.o lib/.libs/CifFile.o lib/.libs/CifFileReadDef.o lib/.libs/CifFileUtil.o lib/.libs/CifParentChild.o lib/.libs/CifParser.o lib/.libs/CifParserBase.o lib/.libs/CifScanner.o lib/.libs/CifScannerBase.o lib/.libs/CifString.o lib/.libs/DICParser.o lib/.libs/DICParserBase.o lib/.libs/DICScanner.o lib/.libs/DICScannerBase.o lib/.libs/DataInfo.o lib/.libs/DicFile.o lib/.libs/DictDataInfo.o lib/.libs/DictObjCont.o lib/.libs/DictObjContInfo.o lib/.libs/DictObjFile.o lib/.libs/DictParentChild.o lib/.libs/Exceptions.o lib/.libs/GenCont.o lib/.libs/GenString.o lib/.libs/ISTable.o lib/.libs/ITTable.o lib/.libs/ParentChild.o lib/.libs/PdbMlFileUtil.o lib/.libs/PdbMlParserHandler.o lib/.libs/RcsbFile.o lib/.libs/RcsbPlatform.o lib/.libs/Serializer.o lib/.libs/TTable.o lib/.libs/TableFile.o lib/.libs/mapped_ptr_vector.o lib/.libs/mapped_vector.o lib/.libs/misc_util.o lib/.libs/regcomp.o lib/.libs/regerror.o lib/.libs/regexec.o lib/.libs/regfree.o -lxerces-c -lstdc++ -lm -lc -lgcc_s -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librcsb-core-wrapper.so.0 -o lib/.libs/librcsb-core-wrapper.so.0.0.1 libtool: link: (cd "lib/.libs" && rm -f "librcsb-core-wrapper.so.0" && ln -s "librcsb-core-wrapper.so.0.0.1" "librcsb-core-wrapper.so.0") libtool: link: (cd "lib/.libs" && rm -f "librcsb-core-wrapper.so" && ln -s "librcsb-core-wrapper.so.0.0.1" "librcsb-core-wrapper.so") libtool: link: ar cr lib/.libs/librcsb-core-wrapper.a lib/BlockIO.o lib/CifCorrector.o lib/CifDataInfo.o lib/CifExcept.o lib/CifFile.o lib/CifFileReadDef.o lib/CifFileUtil.o lib/CifParentChild.o lib/CifParser.o lib/CifParserBase.o lib/CifScanner.o lib/CifScannerBase.o lib/CifString.o lib/DICParser.o lib/DICParserBase.o lib/DICScanner.o lib/DICScannerBase.o lib/DataInfo.o lib/DicFile.o lib/DictDataInfo.o lib/DictObjCont.o lib/DictObjContInfo.o lib/DictObjFile.o lib/DictParentChild.o lib/Exceptions.o lib/GenCont.o lib/GenString.o lib/ISTable.o lib/ITTable.o lib/ParentChild.o lib/PdbMlFileUtil.o lib/PdbMlParserHandler.o lib/RcsbFile.o lib/RcsbPlatform.o lib/Serializer.o lib/TTable.o lib/TableFile.o lib/mapped_ptr_vector.o lib/mapped_vector.o lib/misc_util.o lib/regcomp.o lib/regerror.o lib/regexec.o lib/regfree.o libtool: link: ranlib lib/.libs/librcsb-core-wrapper.a libtool: link: ( cd "lib/.libs" && rm -f "librcsb-core-wrapper.la" && ln -s "../librcsb-core-wrapper.la" "librcsb-core-wrapper.la" ) cd wrapper && make OPT=-O make[3]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005/wrapper' sed -e 's!@C++FLAGS@!-g -O2 -ffile-prefix-map=/build/reproducible-path/librcsb-core-wrapper-1.005=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -std=c++11 -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I -I !g; s!@DEFINES@! -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW !g; s!@EXT_COMP_OPT@!-ftemplate-depth-128 -fno-inline -Wall!; s!@EXT_LIBS_DIRS@!-L -L -L!g; s!@EXT_LIBS@!-l -l -l!g;' < "python/setup.py.in" > "python/setup.py" ln -sf ../src python/src make[3]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005/wrapper' make[2]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005' /usr/bin/make doc make[2]: Entering directory '/build/reproducible-path/librcsb-core-wrapper-1.005' rm -rf rcsb && cp -r include rcsb grep -lr '^#include "' rcsb | xargs sed -i -e '/^#include "/{ s/#include "\([^"]\+\)"/#include /; }' mkdir -p docs/doxyfiles echo PROJECT_NAME = librcsb-core-wrapper > docs/doxyfiles/Doxyfile echo PROJECT_NUMBER = 1.005 >> docs/doxyfiles/Doxyfile echo OUTPUT_DIRECTORY = docs >> docs/doxyfiles/Doxyfile echo INPUT = rcsb >> docs/doxyfiles/Doxyfile cat etc/Doxyfile-template >> docs/doxyfiles/Doxyfile doxygen docs/doxyfiles/Doxyfile warning: Tag 'USE_WINDOWS_ENCODING' at line 75 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DETAILS_AT_TOP' at line 177 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 411 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 677 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 732 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 964 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 970 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1131 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1144 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_WIDTH' at line 1246 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_HEIGHT' at line 1254 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1274 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/CifFileUtil.h:39: warning: The following parameter of DataCorrection(CifFile &cifFile, DicFile &dicRef) is not documented: parameter 'cifFile' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/CifFile.h:421: warning: The following parameter of CifFile::DataChecking(Block &block, Block &refBlock, std::ostringstream &buf, const bool extraDictChecks=false, const bool extraCifChecks=false) is not documented: parameter 'buf' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/DicFile.h:42: warning: The following parameter of DicFile::DicFile(const eFileMode fileMode, const std::string &objFileName, const bool verbose=false, const Char::eCompareType caseSense=Char::eCASE_SENSITIVE, const unsigned int maxLineLength=STD_CIF_LINE_LENGTH, const std::string &nullValue=CifString::UnknownValue) is not documented: parameter 'objFileName' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/DictObjFile.h:45: warning: The following parameter of DictObjFile::DictObjFile(const string &persStorFileName, const eFileMode fileMode=READ_MODE, const bool verbose=false, const string &dictSdbFileName=std::string()) is not documented: parameter 'persStorFileName' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/ISTable.h:527: warning: The following parameter of ISTable::GetColumn(std::vector< std::string > &col, const std::string &colName, const std::vector< unsigned int > &rowIndex) is not documented: parameter 'rowIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/ISTable.h:396: warning: The following parameter of ISTable::InsertColumn(const std::string &colName, const std::string &afColName, const std::vector< std::string > &col=std::vector< std::string >()) is not documented: parameter 'afColName' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/ISTable.h:1003: warning: The following parameters of ISTable::Search(std::vector< unsigned int > &res, const std::string &target, const std::string &colName, const unsigned int fromRowIndex=0, const eSearchDir searchDir=eFORWARD, const eSearchType searchType=eEQUAL) are not documented: parameter 'fromRowIndex' parameter 'searchDir' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/ISTable.h:1031: warning: The following parameters of ISTable::Search(std::vector< unsigned int > &res, const std::vector< std::string > &targets, const std::vector< std::string > &colNames, const unsigned int fromRowIndex=0, const eSearchDir searchDir=eFORWARD, const eSearchType searchType=eEQUAL, const std::string &indexName=std::string()) are not documented: parameter 'fromRowIndex' parameter 'searchDir' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/ITTable.h:410: warning: The following parameter of ITTable::GetColumn(std::vector< std::string > &col, const std::string &colName, const std::vector< unsigned int > &rowIndex) is not documented: parameter 'rowIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:278: warning: The following parameter of TTable::AddColumn(const std::vector< std::string > &col=std::vector< std::string >()) is not documented: parameter 'col' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:229: warning: The following parameter of TTable::ClearTuple(const unsigned int tupleIndex) is not documented: parameter 'tupleIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:247: warning: The following parameter of TTable::DeleteTuple(const unsigned int tupleIndex) is not documented: parameter 'tupleIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:360: warning: The following parameters of TTable::FillColumn(const unsigned int colIndex, const std::vector< std::string > &col, const unsigned int fromTupleIndex=0) are not documented: parameter 'col' parameter 'fromTupleIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:186: warning: The following parameter of TTable::FillTuple(const unsigned int tupleIndex, const std::vector< std::string > &tuple, const unsigned int fromColIndex=0) is not documented: parameter 'fromColIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:393: warning: The following parameters of TTable::GetColumn(std::vector< std::string > &col, const unsigned int colIndex, const unsigned int fromTupleIndex, unsigned int toTupleIndex) are not documented: parameter 'col' parameter 'fromTupleIndex' parameter 'toTupleIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:311: warning: The following parameter of TTable::InsertColumn(const unsigned int atColIndex, const std::vector< std::string > &col=std::vector< std::string >()) is not documented: parameter 'col' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:471: warning: The following parameter of TTable::operator()(const unsigned int tupleIndex, const unsigned int colIndex) is not documented: parameter 'tupleIndex' /build/reproducible-path/librcsb-core-wrapper-1.005/rcsb/TTable.h:495: warning: The following parameter of TTable::operator()(const unsigned int tupleIndex, const unsigned int colIndex) const is not documented: parameter 'tupleIndex' make[2]: Leaving directory '/build/reproducible-path/librcsb-core-wrapper-1.005' dh_auto_build --sourcedirectory=wrapper/python --buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:294: InformationOnly: Normalizing '1.000' to '1.0' self.metadata.version = self._normalize_version(self.metadata.version) cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from src/CharPyWrap.C:3: ../../include/GenString.h:76:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/CharPyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/CifDataInfoPyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/CifFilePyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function &,::std::string const &,::std::string const &,::std::string const & ) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/CifFilePyWrap.C:210:40: warning: typedef 'GetAttributeValuesIf_function_type' locally defined but not used [-Wunused-local-typedefs] 210 | typedef void ( ::CifFile::*GetAttributeValuesIf_function_type )( ::std::vector< std::string > &,::std::string const &,::std::string const &,::std::string const &,::std::string const &,::std::string const & ) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from ../../include/DataInfo.h:23, from src/DataInfoPyWrap.C:6: ../../include/GenString.h:76:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/DataInfoPyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/DicFilePyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/DictDataInfoPyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/DictObjFilePyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/ISTablePyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function &,::std::vector< std::string > const &,::std::vector< std::string > const &,unsigned int const,::ITTable::eSearchDir const,::ITTable::eSearchType const,::std::string const & ) ; | ^~~~~~~~~~~~~~~~~~~~ src/ISTablePyWrap.C:245:40: warning: typedef 'GetColumn_function_type' locally defined but not used [-Wunused-local-typedefs] 245 | typedef void ( ::ISTable::*GetColumn_function_type )( ::std::vector< std::string > &,::std::string const & ) ; | ^~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from ../../include/DataInfo.h:23, from src/PdbMlFilePyWrap.C:6: ../../include/GenString.h:76:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/PdbMlFilePyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | class CharEqualTo : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from src/TableFilePyWrap.C:1: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../include/GenString.h:92:32: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 92 | class WhiteSpace : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ ../../include/GenString.h:132:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 132 | class StringEqualTo : public std::binary_function Changed-By: Alexandre Detiste Description: librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0t64 librcsb-core-wrapper0-dev - development files for librcsb-core-wrapper0t64 librcsb-core-wrapper0t64 - C++ library providing OO API to information in mmCIF format python3-corepywrap - library that exports C++ mmCIF accessors to Python3 Closes: 1080948 Changes: librcsb-core-wrapper (1.005-12) unstable; urgency=medium . * Team upload. * Add build-dependes on python3-setuptools (Closes: #1080948) Checksums-Sha1: c2d9f60260efccffb360314d689cee391f865a29 11231308 librcsb-core-wrapper-doc_1.005-12_all.deb ed7e8928b2b13b83fe0195ed6de763a4371dff2c 362376 librcsb-core-wrapper0-dev_1.005-12_armhf.deb ecc150e753dad67d2c7f430d08e43994d9e5c3a8 4309496 librcsb-core-wrapper0t64-dbgsym_1.005-12_armhf.deb 62901be542b4410fe79df7720a7568dfda34872f 270340 librcsb-core-wrapper0t64_1.005-12_armhf.deb 273450f2564963fa32c095c401b414d97e1512df 10693 librcsb-core-wrapper_1.005-12_armhf.buildinfo df146657d3a01bf444682d32ed52fc4f850b121a 3419392 python3-corepywrap-dbgsym_1.005-12_armhf.deb 5aa3e3c4174f19d913947a306f183dedd5be083c 186588 python3-corepywrap_1.005-12_armhf.deb Checksums-Sha256: 658b4864f9fc035b35679be60ca6d9d1fd722fe1d29ec8f4cdde3a523f3c9b89 11231308 librcsb-core-wrapper-doc_1.005-12_all.deb dec35d824de66963dc0120b8ae2965ddff3436ba44cb008dd1c71b5b54afa2b9 362376 librcsb-core-wrapper0-dev_1.005-12_armhf.deb 2c7d0044c6d5bdf3295e43e3ceccbb10dd3f3e3011043274da574556b2630b82 4309496 librcsb-core-wrapper0t64-dbgsym_1.005-12_armhf.deb a9c18217b9617ffb7947bc91a853c217713d7063144bf51de3aca1d609e4b13a 270340 librcsb-core-wrapper0t64_1.005-12_armhf.deb 891d128a91a19391ee121d0b98f999af1e936bf3cbd6314beec78493877aa262 10693 librcsb-core-wrapper_1.005-12_armhf.buildinfo ea8fad1c1b52194c1c88afa958cfd389113129faa09174441f352a76fba7f6ab 3419392 python3-corepywrap-dbgsym_1.005-12_armhf.deb c4f58bf71d9ae6f7517ea4611fb0795984fa18346c30da14ad9fe5d7d161b400 186588 python3-corepywrap_1.005-12_armhf.deb Files: 50634313c246afc85dc8314629cf8893 11231308 doc optional librcsb-core-wrapper-doc_1.005-12_all.deb 4bf2bff71dbb4e62362718fb900dc24a 362376 libdevel optional librcsb-core-wrapper0-dev_1.005-12_armhf.deb 4ec01a919a6570f6244c73953c048e5f 4309496 debug optional librcsb-core-wrapper0t64-dbgsym_1.005-12_armhf.deb 1ea22fff438a47887d88dbe114672689 270340 libs optional librcsb-core-wrapper0t64_1.005-12_armhf.deb 939ae8f198475876bc0b8011bccf7185 10693 libs optional librcsb-core-wrapper_1.005-12_armhf.buildinfo 0bbb844e90ad57563ef897cc5a849f4c 3419392 debug optional python3-corepywrap-dbgsym_1.005-12_armhf.deb e37b9e44aac45a5ce098cd6a1e06adba 186588 python optional python3-corepywrap_1.005-12_armhf.deb Sun Oct 20 03:00:13 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_31-7648.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/librcsb-core-wrapper_1.005-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/librcsb-core-wrapper_1.005-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/librcsb-core-wrapper_1.005-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/b1/librcsb-core-wrapper_1.005-12_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.UaWJj96Q/b2/librcsb-core-wrapper_1.005-12_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.770s) 0.770s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.249s) 0.249s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.247s CPU time consumed: 1.248s Sun Oct 20 03:00:16 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 20 03:00:16 UTC 2024 I: librcsb-core-wrapper from trixie built successfully and reproducibly on armhf. Sun Oct 20 03:00:18 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 20 03:00:18 UTC 2024 I: Submitting 12K b1/librcsb-core-wrapper_1.005-12_armhf.buildinfo.asc Sun Oct 20 03:00:18 UTC 2024 I: Submitting 12K b2/librcsb-core-wrapper_1.005-12_armhf.buildinfo.asc Sun Oct 20 03:00:19 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 20 03:00:19 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 20 03:00:19 UTC 2024 I: Removing signed librcsb-core-wrapper_1.005-12_armhf.buildinfo.asc files: removed './b1/librcsb-core-wrapper_1.005-12_armhf.buildinfo.asc' removed './b2/librcsb-core-wrapper_1.005-12_armhf.buildinfo.asc'