Thu Apr 11 01:50:04 UTC 2024 I: starting to build libgenome/trixie/armhf on jenkins on '2024-04-11 01:49' Thu Apr 11 01:50:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_19/1565/console.log Thu Apr 11 01:50:04 UTC 2024 I: Downloading source for trixie/libgenome=1.3.11+svn20110227.4616-6 --2024-04-11 01:50:04-- http://deb.debian.org/debian/pool/main/libg/libgenome/libgenome_1.3.11%2bsvn20110227.4616-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2329 (2.3K) [text/prs.lines.tag] Saving to: ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ 0K .. 100% 344M=0s 2024-04-11 01:50:04 (344 MB/s) - ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ saved [2329/2329] Thu Apr 11 01:50:04 UTC 2024 I: libgenome_1.3.11+svn20110227.4616-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgenome Binary: libgenome-dev, libgenome0 Architecture: any Version: 1.3.11+svn20110227.4616-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://sourceforge.net/projects/libgenome/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libgenome Vcs-Git: https://salsa.debian.org/med-team/libgenome.git Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: libgenome-dev deb libdevel optional arch=any libgenome0 deb libs optional arch=any Checksums-Sha1: ff883500ecf525a078e542ba2eacf7918f7a02f8 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 59be97f5a108ea65aab8e094e87cf864c7aefc4b 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Checksums-Sha256: a2ca77c2a4e9c6239d9cc2fd84b84ffa75444283e3c3d34f8e724525b6a1b677 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz d9acd8439aa96fd9a03715c627aecd74c2e36e1cb06605b692d28e4987e139a7 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Files: 505900cdacc864d2a52847ff47b8ae37 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 041b4257884c07dcbb7cf981aa66c377 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Dgit: 86e25e54e7ab9b1c72b06b9d927b5be88681719e debian archive/debian/1.3.11+svn20110227.4616-6 https://git.dgit.debian.org/libgenome -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmS2joIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrYpQ/9GmfxAx9Kn/A03Txzsgh5gI0HZwWR E9IKx/Le6uGfYME9Km2/QNJuxlaRRDxyeaRf6UQP+uQrPUGNfUc2UjlhOrwS8bB1 8HZiuvFpjSMX8tJFC8m7YFMn8/60FosR2MscU44+QHxM1HVf0AJdzeYG2cmlBdxc gou51jSb7dVUwE3XpokVoz/uLYCAihgkwCr4dW29HTmesZXIlk0QlU4Iago3m9OK J8lIetzln44h/sXQZ4YgkiUsJGDE3Rg60NPqj2iE9G3zPhtRHGa6sVvN9ZRgeVf0 HCgNnffxXvNWjCNQ2lyIDAbCeb0SWHzbJ9Arl/KqueNtuHEiQ5MYd/cSa0611dUS Eei9E3hEwHjFBSlqByV3ppbKnaIP8SS85cGyhIVozSpbD17zySMbEwouf2+hNzy4 t1pasoU23xze2Tvkbe0UJpXxc06zGIsMFYg3RYffjqTk3knPdAcyHC/pd5hQ5BNM rMz1L+WSIjfc7lINFH2Ek8Iw1SB+Mqh/ze8cZW4mE7baZUiDjrcR3RYB0CbMVCrb GITtKeN98DBRw/umZoLKpMTkgVvPn0gR6ZVzIMQtYPOSSGytZWcFrcwbedLI4rf2 54RK9+qv3SuVr1UvfBaoqet8nSCnDQuZ1RNcqUPkLqMdMEuXlz/0gAfi7JGfJKPJ s/g6NRO6gkP4HWA= =ZSy4 -----END PGP SIGNATURE----- Thu Apr 11 01:50:04 UTC 2024 I: Checking whether the package is not for us Thu Apr 11 01:50:04 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Thu Apr 11 01:50:04 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Thu Apr 11 01:52:44 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 10 13:50:11 -12 2024 I: pbuilder-time-stamp: 1712800211 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-6.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jul 18 13:07:14 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgenome_1.3.11+svn20110227.4616-6.dsc: no acceptable signature found dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32637/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='51e58620b6814f5391e2c8be71f3466f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32637' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/pbuilderrc_B91n --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 10 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19636 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After unpacking 68.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.106 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Fetched 18.4 MB in 1s (32.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19636 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../23-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:61: the top level configure.ac:70: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:70: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:70: the top level configure.ac:73: warning: The macro `AM_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:77: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:77: the top level configure.ac:99: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:99: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:745: AM_CONFIG_HEADER is expanded from... configure.ac:99: the top level configure.ac:116: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:116: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:116: the top level configure.ac:124: warning: AC_OUTPUT should be used without arguments. configure.ac:124: You should run autoupdate. configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking target system type... arm-unknown-linux-gnueabihf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for egrep... (cached) /usr/bin/grep -E checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking how to run the C preprocessor... gcc -E checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnFilter.lo gnFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnCompare.lo gnCompare.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnTranslator.lo gnTranslator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnSourceFactory.lo gnSourceFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnFeature.lo gnFeature.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1 In file included from /usr/include/c++/13/vector:72, from ../libGenome/gnFeature.h:22, from gnFeature.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const genome::gnLocation&}; _Tp = genome::gnLocation; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = genome::gnLocation; _Alloc = std::allocator]', inlined from 'genome::gnFeature::gnFeature(const genome::gnFeature&)' at gnFeature.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnSourceQualifier.lo gnSourceQualifier.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnSourceQualifier.cpp -fPIC -DPIC -o .libs/gnSourceQualifier.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnSourceQualifier.cpp -o gnSourceQualifier.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnFileContig.lo gnFileContig.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFileContig.cpp -o gnFileContig.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnSourceSpec.lo gnSourceSpec.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnSourceSpec.cpp -fPIC -DPIC -o .libs/gnSourceSpec.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnFileSource.lo gnFileSource.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFileSource.cpp -fPIC -DPIC -o .libs/gnFileSource.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnFASSource.lo gnFASSource.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-clash-protection -Wformat -Werror=format-security -c -o gnBaseFeature.lo gnBaseFeature.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnBaseFeature.cpp -fPIC -DPIC -o .libs/gnBaseFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnRAWSource.cpp -o gnRAWSource.o >/dev/null 2>&1 In file included from /usr/include/c++/13/vector:72, from ../libGenome/gnBaseFeature.h:21, from gnBaseFeature.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const genome::gnLocation&}; _Tp = genome::gnLocation; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnSEQSource.lo gnSEQSource.cpp In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = genome::gnLocation; _Alloc = std::allocator]', inlined from 'virtual boolean genome::gnBaseFeature::AddLocation(const genome::gnLocation&, uint32)' at gnBaseFeature.cpp:197:24: /usr/include/c++/13/bits/vector.tcc:170:26: note: parameter passing for argument of type 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[with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnPosSpecificTranslator.lo gnPosSpecificTranslator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -fPIC -DPIC -o .libs/gnPosSpecificTranslator.o In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void genome::gnFastTranslator::CacheTranslator(const genome::gnTranslator*, std::string, gnSeqI)' at gnFastTranslator.cpp:143:18: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o gnDefs.lo gnDefs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c gnDefs.cpp -o gnDefs.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 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-fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") libtool: link: ar cr .libs/libGenome.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o libtool: link: ranlib .libs/libGenome.a libtool: link: ( cd ".libs" && rm -f "libGenome.la" && ln -s "../libGenome.la" "libGenome.la" ) make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so.0.1.3 libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a libtool: install: chmod 644 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a libtool: install: ranlib /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libgenome0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a debian/libgenome-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so debian/libgenome-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so.0 debian/libgenome0/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so.0.1.3 debian/libgenome0/usr/lib/arm-linux-gnueabihf PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/arm-linux-gnueabihf/pkgconfig find debian -name libGenome.la -delete make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-6_armhf.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-6_armhf.deb'. dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo dpkg-genchanges --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32637 and its subdirectories I: Current time: Wed Apr 10 13:52:30 -12 2024 I: pbuilder-time-stamp: 1712800350 Thu Apr 11 01:52:46 UTC 2024 I: 1st build successful. Starting 2nd build on remote node cbxi4a-armhf-rb.debian.net. Thu Apr 11 01:52:46 UTC 2024 I: Preparing to do remote build '2' on cbxi4a-armhf-rb.debian.net. Thu Apr 11 02:00:29 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. Thu Apr 11 02:00:32 UTC 2024 I: libgenome_1.3.11+svn20110227.4616-6_armhf.changes: Format: 1.8 Date: Tue, 18 Jul 2023 14:57:43 +0200 Source: libgenome Binary: libgenome-dev libgenome0 libgenome0-dbgsym Architecture: armhf Version: 1.3.11+svn20110227.4616-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libgenome-dev - toolkit for developing bioinformatic related software (devel) libgenome0 - toolkit for developing bioinformatic related software Closes: 1015488 1037728 Changes: libgenome (1.3.11+svn20110227.4616-6) unstable; urgency=medium . * d/libgenome0.symbols.amd64: update. Mark symbols optimized out by LTO as optional. This has also the side effect of resolving build issues encountered with Gcc 13. (Closes: #1015488, #1037728) * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 86add78a1c2bfa0d05210067451f45b4d09f1bad 179284 libgenome-dev_1.3.11+svn20110227.4616-6_armhf.deb ed0a2c8f1d873c264b4e83ac16c3c05a44df841c 1673752 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_armhf.deb 1c52a384023e1a898bbff7bc7b5bce57dfc2ebd4 104032 libgenome0_1.3.11+svn20110227.4616-6_armhf.deb 7d5bd37d309119af6194deb7ed4dba6049e3684c 6243 libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo Checksums-Sha256: a1b116631c0fd7d65ecbcf6f6bff6a8d27aa85d0693bb95beeac0c2c8ec2e014 179284 libgenome-dev_1.3.11+svn20110227.4616-6_armhf.deb 8eb65b90dfd7b7d0f77e3684fa60bb78c424fdafabae13cfe2cdfc7fc98e839c 1673752 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_armhf.deb afab3f662699e5197305fa0baff3ef9a570f22cc98627be7d8f33b615ebef70c 104032 libgenome0_1.3.11+svn20110227.4616-6_armhf.deb 0102ced484c0f40ee545d6cd6b442319fd21a5734ee6c29e9a381b31ef3f9886 6243 libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo Files: e6d2456aec44b36d6b867d867f34ee4b 179284 libdevel optional libgenome-dev_1.3.11+svn20110227.4616-6_armhf.deb 7e20e0d006e3e97efb060419aa056b0b 1673752 debug optional libgenome0-dbgsym_1.3.11+svn20110227.4616-6_armhf.deb 65b1e864610a1d0a3d27ff23210685fc 104032 libs optional libgenome0_1.3.11+svn20110227.4616-6_armhf.deb a0a11443b0eeabda15debbf2b5c99cbf 6243 science optional libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo Thu Apr 11 02:00:34 UTC 2024 I: diffoscope 263 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_19-1565.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/libgenome_1.3.11+svn20110227.4616-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/libgenome_1.3.11+svn20110227.4616-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/libgenome_1.3.11+svn20110227.4616-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/b1/libgenome_1.3.11+svn20110227.4616-6_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.QPfBBQyA/b2/libgenome_1.3.11+svn20110227.4616-6_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.347s) 0.347s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.037s) 0.037s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 661ms CPU time consumed: 660ms Thu Apr 11 02:00:35 UTC 2024 I: diffoscope 263 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 11 02:00:35 UTC 2024 I: libgenome from trixie built successfully and reproducibly on armhf. Thu Apr 11 02:00:36 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Apr 11 02:00:36 UTC 2024 I: Submitting 8.0K b1/libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo.asc Thu Apr 11 02:00:37 UTC 2024 I: Submitting 8.0K b2/libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo.asc Thu Apr 11 02:00:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 11 02:00:38 UTC 2024 I: Done submitting .buildinfo files. Thu Apr 11 02:00:38 UTC 2024 I: Removing signed libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo.asc files: removed './b1/libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo.asc' removed './b2/libgenome_1.3.11+svn20110227.4616-6_armhf.buildinfo.asc'