Sat May 11 23:38:18 UTC 2024 I: starting to build libfreecontact-perl/trixie/armhf on jenkins on '2024-05-11 23:38' Sat May 11 23:38:18 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_1/3379/console.log Sat May 11 23:38:18 UTC 2024 I: Downloading source for trixie/libfreecontact-perl=0.08-9 --2024-05-11 23:38:18-- http://deb.debian.org/debian/pool/main/libf/libfreecontact-perl/libfreecontact-perl_0.08-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘libfreecontact-perl_0.08-9.dsc’ 0K .. 100% 192M=0s 2024-05-11 23:38:18 (192 MB/s) - ‘libfreecontact-perl_0.08-9.dsc’ saved [2184/2184] Sat May 11 23:38:18 UTC 2024 I: libfreecontact-perl_0.08-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz d2bdf94b23d0ca1fce6bb1df286ba03736b17947 4148 libfreecontact-perl_0.08-9.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz 7264029a96308f34c90fc201b3b7ee6f75cd12f5412f34b57098cb32ab6fdea5 4148 libfreecontact-perl_0.08-9.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 49edda281a739efab371adb449402c83 4148 libfreecontact-perl_0.08-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHodgoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE0jg/+NNIJ0xmtW0+M4m7Z/M7RJunfhXJEXyCJ 2uR3K+0jyER5JJ9UQw7TMR+M19NCliWpTWdXlNYC1+p9chj46IlW/pV1+lNAsOes jmWO/JJLVAn2hexfmzBQytW7UGG+EZyiSIJYo/Wxv6D+vQ413lAbCrO59fRVj2Pu c9WMMSHcGetF7E/CUQukaR5Uu76598/h85WKBbiFH5BW/jl0zGB7HsGq3dnc9ahT rIgFhhynzmnNuWKiC0S6RADvma1YLGBWyuixygruRhk2TxRtFXH1jT7pYyCFpC7v f958/c6mH+D3yzuXYRSjki3fdA5k9kcD++c3zzTt2VtOEFlp/eqoN2n0M17aOvNQ sEPqpXzWhDZ6K2/1ICWGKA5WvbjUA9xOcpe5uu8582OVmqVsnBxE5ED27HYngE4b RFipAvxoc3uRZlXpaVI0JAMrrdYVce+bfWVYSqhLeqyyLoWKmAbrQkFEkrHuytYs hp1O8QSireSw0k0+yMeOm6YARVtCTqEknNbsyeSITQH/NkoEOTLSR29iYdxSNO2M jlg9swzJUtE/XbzpwVar9GjT2U1gxUwSGp3lJV+7RdaYrEkmP30hQCaZFXu8aojv p9s2k89K4KIcp1mZR0aN88w2QKvds1USWYIQyLYM3//clWy23WrXIusZdFXGqPE0 uqyR4TECfL4= =2PNN -----END PGP SIGNATURE----- Sat May 11 23:38:18 UTC 2024 I: Checking whether the package is not for us Sat May 11 23:38:18 UTC 2024 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Sat May 11 23:38:18 UTC 2024 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Sat May 11 23:50:18 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 11 11:38:27 -12 2024 I: pbuilder-time-stamp: 1715470707 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfreecontact-perl_0.08-9.dsc] I: copying [./libfreecontact-perl_0.08.orig.tar.gz] I: copying [./libfreecontact-perl_0.08-9.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jan 19 20:35:22 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libfreecontact-perl_0.08-9.dsc: no acceptable signature found dpkg-source: info: extracting libfreecontact-perl in libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-timing-initialization.patch dpkg-source: info: applying missing-use-carp.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15730/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8e63d46a021e4c3a8d04cfed6ab5c217' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15730' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/pbuilderrc_I7k7 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/b1 --logfile b1/build.log libfreecontact-perl_0.08-9.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 9 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/15730/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0t64{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB of archives. After unpacking 75.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libfreecontact0t64 armhf 1.0.21-13.1+b1 [61.7 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libfreecontact-dev armhf 1.0.21-13.1+b1 [75.3 kB] Fetched 20.8 MB in 2s (10.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../30-libblas3_3.12.0-3_armhf.deb ... Unpacking libblas3:armhf (3.12.0-3) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../31-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../32-libgfortran5_14-20240330-1_armhf.deb ... Unpacking libgfortran5:armhf (14-20240330-1) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../33-liblapack3_3.12.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-3) ... Selecting previously unselected package libfreecontact0t64:armhf. Preparing to unpack .../34-libfreecontact0t64_1.0.21-13.1+b1_armhf.deb ... Unpacking libfreecontact0t64:armhf (1.0.21-13.1+b1) ... Selecting previously unselected package libfreecontact-dev:armhf. Preparing to unpack .../35-libfreecontact-dev_1.0.21-13.1+b1_armhf.deb ... Unpacking libfreecontact-dev:armhf (1.0.21-13.1+b1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.21-14) ... Setting up libgfortran5:armhf (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libfreecontact0t64:armhf (1.0.21-13.1+b1) ... Setting up groff-base (1.23.0-4) ... Setting up libfreecontact-dev:armhf (1.0.21-13.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" LD="'arm-linux-gnueabihf-gcc' -Wl,-z,relro -Wl,-z,now" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" "LD='arm-linux-gnueabihf-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () "/usr/bin/perl" "/usr/share/perl/5.38/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.38/ExtUtils/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc chmod 644 "FreeContact.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE" FreeContact.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ FreeContact.c: In function 'void XS_FreeContact__Predictor__run_with_seq_weights(PerlInterpreter*, CV*)': FreeContact.c:726:52: warning: format '%d' expects argument of type 'int', but argument 2 has type 'I32' {aka 'long int'} [-Wformat=] 726 | else croak("FreeContact::Predictor::_run_with_seq_weights() -- __aliw[%d] is not a number", k); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~ | | | I32 {aka long int} rm -f blib/arch/auto/FreeContact/FreeContact.so 'arm-linux-gnueabihf-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_test make -j3 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.468137 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 1.01049 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 70.6634 secs, inverted matrix (incl LUf) in 208.944 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 212.015 secs will use 1 OMP threads 660/1000total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.458843 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.763854 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 100.192 secs will try rho 0.00178064, exact solution  iteration = 1will use 1 OMP threads 211/1000total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.994689 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 75.5255 secs, inverted matrix (incl LUf) in 222.988 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 545 wallclock secs ( 0.17 usr 0.03 sys + 536.35 cusr 4.15 csys = 540.70 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libfreecontact-perl/ make -j3 install DESTDIR=/build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/FreeContact/FreeContact.so Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/FreeContact.pm Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/FreeContact/autosplit.ix Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_md5sums dh_builddeb dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-9_armhf.deb'. dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libfreecontact-perl_0.08-9_armhf.buildinfo dpkg-genchanges --build=binary -O../libfreecontact-perl_0.08-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15730 and its subdirectories I: Current time: Sat May 11 11:50:12 -12 2024 I: pbuilder-time-stamp: 1715471412 Sat May 11 23:50:20 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Sat May 11 23:50:20 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Sat May 11 23:52:22 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Sat May 11 23:52:24 UTC 2024 I: libfreecontact-perl_0.08-9_armhf.changes: Format: 1.8 Date: Wed, 19 Jan 2022 21:31:25 +0100 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: armhf Version: 0.08-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-9) unstable; urgency=medium . * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: bfd260133d1594f68d69b0e93ea10cfb874e6811 159796 libfreecontact-perl-dbgsym_0.08-9_armhf.deb 0272942cabde0b49b98b59e08eb139e47a8ba2a6 5260 libfreecontact-perl_0.08-9_armhf.buildinfo 25e9070b85ae9c3e5bb797544207617cc3a9bbe5 60988 libfreecontact-perl_0.08-9_armhf.deb Checksums-Sha256: a817aadf47afde3312aa3f1995fdf6aa94a0d7476f63fc70c5de8d303b46023a 159796 libfreecontact-perl-dbgsym_0.08-9_armhf.deb 705dde34a8ecfa6ae7dcc2bd8c2bb7b448efb85e135cacb6542f4138cc4ffff6 5260 libfreecontact-perl_0.08-9_armhf.buildinfo 099a4b84ca892bfa30a8d7c5c2c7a63f94e6e06f45d2ab940b93bc004eb1b45c 60988 libfreecontact-perl_0.08-9_armhf.deb Files: 9497f491d788a39dc11f3e2658a70e70 159796 debug optional libfreecontact-perl-dbgsym_0.08-9_armhf.deb 90a22144bf8b3ab12c760ab35b5ddbd0 5260 perl optional libfreecontact-perl_0.08-9_armhf.buildinfo e94889d2245048cd03fd4fc6a48571e7 60988 perl optional libfreecontact-perl_0.08-9_armhf.deb Sat May 11 23:52:26 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_1-3379.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/libfreecontact-perl_0.08-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/libfreecontact-perl_0.08-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/libfreecontact-perl_0.08-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/b1/libfreecontact-perl_0.08-9_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.q8qkjPuB/b2/libfreecontact-perl_0.08-9_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.685s) 0.685s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.037s) 0.037s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.327s CPU time consumed: 1.016s Sat May 11 23:56:12 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 11 23:56:12 UTC 2024 I: libfreecontact-perl from trixie built successfully and reproducibly on armhf. Sat May 11 23:56:16 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 11 23:56:16 UTC 2024 I: Submitting 8.0K b1/libfreecontact-perl_0.08-9_armhf.buildinfo.asc Sat May 11 23:56:35 UTC 2024 I: Submitting 8.0K b2/libfreecontact-perl_0.08-9_armhf.buildinfo.asc Sat May 11 23:56:55 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 11 23:56:55 UTC 2024 I: Done submitting .buildinfo files. Sat May 11 23:56:55 UTC 2024 I: Removing signed libfreecontact-perl_0.08-9_armhf.buildinfo.asc files: removed './b1/libfreecontact-perl_0.08-9_armhf.buildinfo.asc' removed './b2/libfreecontact-perl_0.08-9_armhf.buildinfo.asc'