Sun May 12 08:12:48 UTC 2024 I: starting to build libdata-stag-perl/trixie/armhf on jenkins on '2024-05-12 08:12' Sun May 12 08:12:48 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_23/2652/console.log Sun May 12 08:12:48 UTC 2024 I: Downloading source for trixie/libdata-stag-perl=0.14-3 --2024-05-12 08:12:48-- http://deb.debian.org/debian/pool/main/libd/libdata-stag-perl/libdata-stag-perl_0.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2193 (2.1K) [text/prs.lines.tag] Saving to: ‘libdata-stag-perl_0.14-3.dsc’ 0K .. 100% 267M=0s 2024-05-12 08:12:48 (267 MB/s) - ‘libdata-stag-perl_0.14-3.dsc’ saved [2193/2193] Sun May 12 08:12:48 UTC 2024 I: libdata-stag-perl_0.14-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-3 Maintainer: Debian Perl Group Uploaders: Charles Plessy , Damyan Ivanov , Florian Schlichting Homepage: http://stag.sourceforge.net/ Standards-Version: 3.9.8 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libdata-stag-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libdata-stag-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libio-string-perl, libxml-perl, rename Package-List: libdata-stag-perl deb perl optional arch=all Checksums-Sha1: 4146dcbfaccb744832ddc3a8e826feb8606faa28 428107 libdata-stag-perl_0.14.orig.tar.gz b5bc720b219d0e7bd2ad2368c44724fb2f8951b5 5488 libdata-stag-perl_0.14-3.debian.tar.xz Checksums-Sha256: 4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59 428107 libdata-stag-perl_0.14.orig.tar.gz baeb0188d94f4a0b8f104d72f9bd9c57cb377db56efae7a0425cb54213a6b211 5488 libdata-stag-perl_0.14-3.debian.tar.xz Files: f803acf74f1bfccc118aeac5483ee871 428107 libdata-stag-perl_0.14.orig.tar.gz ad4c8eb64758bb5b192b40f4db64b475 5488 libdata-stag-perl_0.14-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsjhixBXWVlpOhsvXV5wWDUyeI+gFAmKmZjcACgkQV5wWDUye I+jYBg//RFH8me9+ZubCUXl44qQO3J+fbniemUES5DgOTK81jKGLNWADYiGy7n1D Zzh9TkFVVjexYH/lbwpIG8oybRRWYiprgLEIBOOTa8saUVLS/m1aRAvH4KE32lXp KGAIfI3I7AE/yHgIjzN+E0pQq27S0V/4g47ZbhO1qPdTywwighiFEg52z7msmlb9 mJrJLnAuu8guSk6cZii9+94qhtcypZdDuw3e0UeF821Ya1aPs7pDL31rU8YwOamm i8kHWH4MqN0DaNPpNbgLB1xg8IEiM9kS2hpZo30xJWG/cDQJC4sPVyyPR82j9UOz fDFPZdIIIaOQVSYM+8xXfjqUKL8oit4IH64wTXaf9aJP02JTuJToaw9+dUdReV7p I/jNuKJ/KN9ibLkaRPMICNX3MBCoJV2ntV65RjTakxxddVDZ4eNTj3RCLgtOuLpq gDpUcZ/D8K/DCYfPsvIylkXs0QO9JBQsquvFezKQaaI5qH3t5OoUdo6JqjherlXK r+80u7pdUEzBSsv3cl03ZNlkDPoTETGWULn68Swrefkia2OoTeJ/bmc0HO+hBIFW ZpeshukWWvLiu0IXE+fKLuyKtNPmiXaL9VSzT1YNq6gDUJFLP4BhgMpDAqjaOTjv Gng6ZvFopwUsbKui4BHgM1G65aocOHrVWoYEepeS2/EGaLdYY8U= =Bw0D -----END PGP SIGNATURE----- Sun May 12 08:12:48 UTC 2024 I: Checking whether the package is not for us Sun May 12 08:12:48 UTC 2024 I: Starting 1st build on remote node cbxi4b-armhf-rb.debian.net. Sun May 12 08:12:48 UTC 2024 I: Preparing to do remote build '1' on cbxi4b-armhf-rb.debian.net. Sun May 12 08:16:32 UTC 2024 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 11 20:12:57 -12 2024 I: pbuilder-time-stamp: 1715501577 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libdata-stag-perl_0.14-3.dsc] I: copying [./libdata-stag-perl_0.14.orig.tar.gz] I: copying [./libdata-stag-perl_0.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jun 12 22:18:31 2022 gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libdata-stag-perl_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting libdata-stag-perl in libdata-stag-perl-0.14 dpkg-source: info: unpacking libdata-stag-perl_0.14.orig.tar.gz dpkg-source: info: unpacking libdata-stag-perl_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_names.patch dpkg-source: info: applying no-sf-logo.patch dpkg-source: info: applying fix_pod_errors.patch dpkg-source: info: applying more_pod_errors.patch dpkg-source: info: applying more_spelling_fixes.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19046/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8f9101f16d4842dc894af7d91385eeda' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19046' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/pbuilderrc_vrA0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/b1 --logfile b1/build.log libdata-stag-perl_0.14-3.dsc' SUDO_GID='116' SUDO_UID='112' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4b 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:28 /bin -> usr/bin I: user script /srv/workspace/pbuilder/19046/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libio-string-perl, libxml-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libio-string-perl; however: Package libio-string-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-perl; however: Package libxml-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libclone-perl{a} libdebhelper-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-override-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libdata-dump-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libltdl-dev libmail-sendmail-perl libmailtools-perl lynx wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 76.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.2.1-3 [1326 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libclone-perl armhf 0.46-1+b2 [13.1 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libfile-listing-perl all 6.16-1 [12.4 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf liburi-perl all 5.28-1 [98.6 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libhtml-parser-perl armhf 3.82-1 [95.6 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libhtml-tree-perl all 5.07-3 [211 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libhttp-message-perl all 6.45-1 [82.0 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf perl-openssl-defaults armhf 7+b2 [6708 B] Get: 50 http://deb.debian.org/debian trixie/main armhf libnet-ssleay-perl armhf 1.94-1+b1 [319 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libio-string-perl all 1.08-4 [12.1 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libnet-http-perl all 6.23-1 [23.9 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libwww-perl all 6.77-1 [183 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libxml-parser-perl armhf 2.47-1+b2 [196 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libxml-perl all 0.08-4 [93.0 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf rename all 2.02-1 [21.8 kB] Fetched 21.7 MB in 2s (9851 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.2.1-3_armhf.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../11-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... 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Preparing to unpack .../56-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../57-libxml-parser-perl_2.47-1+b2_armhf.deb ... Unpacking libxml-parser-perl (2.47-1+b2) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../58-libxml-perl_0.08-4_all.deb ... Unpacking libxml-perl (0.08-4) ... Selecting previously unselected package rename. Preparing to unpack .../59-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:armhf (0.46-1+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:armhf (7+b2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up openssl (3.2.1-3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:armhf (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.21-14+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-4) ... Setting up libhtml-parser-perl:armhf (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b2) ... Setting up libxml-perl (0.08-4) ... Processing triggers for libc-bin (2.38-10) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/libdata-stag-perl-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libdata-stag-perl_0.14-3_source.changes dpkg-buildpackage: info: source package libdata-stag-perl dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jelmer Vernooij dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libdata-stag-perl-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libdata-stag-perl-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro" External Module Tk, Tk, is not installed on this computer. stag-view.pl in Data::Stag needs it for tree viewer External Module JSON, JSON parser and writer, is not installed on this computer. Data::Stag::JSONWriter in Data::Stag needs it for Writing JSON External Module Graph::Directed, Generic Graph data stucture and algorithms, is not installed on this computer. Data::Stag::GraphHandler in Data::Stag needs it for transforming stag trees to graphs External Module GD, Graphical Drawing Toolkit, is not installed on this computer. stag-drawtree.pl in Data::Stag needs it for drawing trees External Module XML::LibXSLT, XSLT, is not installed on this computer. Data::Stag::XSLTHandler in Data::Stag needs it for XSLT Transformations External Module MLDBM, multilevel hash store, is not installed on this computer. Data::Stag::StagDB in Data::Stag needs it for indexing stag nodes Information: There are some external packages and perl modules, listed above, which stag uses. This only effects the functionality which is listed above: the rest of stag will work fine, which includes nearly all of the core functionality. Enjoy the rest of stag, which you can use after going 'make install' Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Data Writing MYMETA.yml and MYMETA.json dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/libdata-stag-perl-0.14' cp Data/Stag/DTDWriter.pm blib/lib/Data/Stag/DTDWriter.pm cp Data/Stag/XMLParser.pm blib/lib/Data/Stag/XMLParser.pm cp Data/Stag/IndentWriter.pm blib/lib/Data/Stag/IndentWriter.pm cp Data/Stag.pm blib/lib/Data/Stag.pm cp Data/Stag/JSONWriter.pm blib/lib/Data/Stag/JSONWriter.pm cp Data/Stag/StagImpl.pm blib/lib/Data/Stag/StagImpl.pm cp Data/Stag/XSLTHandler.pm blib/lib/Data/Stag/XSLTHandler.pm cp Data/Stag/IndentParser.pm blib/lib/Data/Stag/IndentParser.pm cp Data/Stag/ITextWriter.pm blib/lib/Data/Stag/ITextWriter.pm cp Data/Stag/PerlWriter.pm blib/lib/Data/Stag/PerlWriter.pm cp Data/Stag/Util.pm blib/lib/Data/Stag/Util.pm cp Data/Stag/XMLWriter.pm blib/lib/Data/Stag/XMLWriter.pm cp Data/Stag/null.pm blib/lib/Data/Stag/null.pm cp Data/Stag/StagI.pm blib/lib/Data/Stag/StagI.pm cp Data/Stag/ChainHandler.pm blib/lib/Data/Stag/ChainHandler.pm cp Data/Stag/Simple.pm blib/lib/Data/Stag/Simple.pm cp Data/Stag/Base.pm blib/lib/Data/Stag/Base.pm cp Data/Stag/Writer.pm blib/lib/Data/Stag/Writer.pm cp Data/Stag/PodParser.pm blib/lib/Data/Stag/PodParser.pm cp Data/Stag/Arr2HTML.pm blib/lib/Data/Stag/Arr2HTML.pm cp Data/Stag/SxprParser.pm blib/lib/Data/Stag/SxprParser.pm cp Data/Stag/GraphHandler.pm blib/lib/Data/Stag/GraphHandler.pm cp Data/Stag/HashDB.pm blib/lib/Data/Stag/HashDB.pm cp Data/Stag/StagDB.pm blib/lib/Data/Stag/StagDB.pm cp Data/Stag/ITextParser.pm blib/lib/Data/Stag/ITextParser.pm cp Data/Stag/SAX2Stag.pm blib/lib/Data/Stag/SAX2Stag.pm cp Data/Stag/SxprWriter.pm blib/lib/Data/Stag/SxprWriter.pm cp Data/Stag/BaseGenerator.pm blib/lib/Data/Stag/BaseGenerator.pm cp Data/Stag/XSLHandler.pm blib/lib/Data/Stag/XSLHandler.pm cp Data/Stag/BaseHandler.pm blib/lib/Data/Stag/BaseHandler.pm cp scripts/stag-autoschema.pl blib/script/stag-autoschema.pl cp scripts/stag-db.pl blib/script/stag-db.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-autoschema.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-db.pl cp scripts/stag-diff.pl blib/script/stag-diff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-diff.pl cp scripts/stag-drawtree.pl blib/script/stag-drawtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-drawtree.pl cp scripts/stag-filter.pl blib/script/stag-filter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-filter.pl cp scripts/stag-findsubtree.pl blib/script/stag-findsubtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-findsubtree.pl cp scripts/stag-flatten.pl blib/script/stag-flatten.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-flatten.pl cp scripts/stag-grep.pl blib/script/stag-grep.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-grep.pl cp scripts/stag-handle.pl blib/script/stag-handle.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-handle.pl cp scripts/stag-itext2simple.pl blib/script/stag-itext2simple.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2simple.pl cp scripts/stag-itext2sxpr.pl blib/script/stag-itext2sxpr.pl cp scripts/stag-itext2xml.pl blib/script/stag-itext2xml.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2sxpr.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2xml.pl cp scripts/stag-join.pl blib/script/stag-join.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-join.pl cp scripts/stag-merge.pl blib/script/stag-merge.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-merge.pl cp scripts/stag-mogrify.pl blib/script/stag-mogrify.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-mogrify.pl cp scripts/stag-parse.pl blib/script/stag-parse.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-parse.pl cp scripts/stag-query.pl blib/script/stag-query.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-query.pl cp scripts/stag-splitter.pl blib/script/stag-splitter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-splitter.pl cp scripts/stag-view.pl blib/script/stag-view.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-view.pl cp scripts/stag-xml2itext.pl blib/script/stag-xml2itext.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-xml2itext.pl Manifying 20 pod documents Manifying 27 pod documents make[1]: Leaving directory '/build/reproducible-path/libdata-stag-perl-0.14' dh_auto_test make -j3 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libdata-stag-perl-0.14' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/autoschema.t ....... 1..3 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:37 2024 # Current time GMT: Sun May 12 08:15:37 2024 # Using Test.pm version 1.31 '(db (species_set (species+ (common_name "VARCHAR\(31\)") (binomial "VARCHAR\(31\)") (tax_id "INT"))) (gene_set (gene+ (symbol "VARCHAR\(15\)") (tax_id "INT") (phenotype* "VARCHAR\(31\)") (GO_term "VARCHAR\(63\)") (map? (cytological (chromosome "INT") (band "VARCHAR\(15\)"))) (synonym "VARCHAR\(7\)"))) (similarity_set (pair+ (symbol+ "VARCHAR\(15\)")))) ok 1 ok 2 ok 3 ok t/chainhandler.t ..... 1..2 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:38 2024 # Current time GMT: Sun May 12 08:15:38 2024 # Using Test.pm version 1.31 chainhandler... checking.. ok 1 ok 2 ok t/db.t ............... 1..1 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:38 2024 # Current time GMT: Sun May 12 08:15:38 2024 # Using Test.pm version 1.31 lucas george star wars sci-fi ford harrison han solo fisher carrie princess leia hamill mark luke skywalker earl-jones james darth vader prowse david darth vader guiness alec obi-wan kenobi attack of the clones sci-fi mcgregor ewan obi-wan kenobi portman natalie princess amigdala jackson peter braindead horror - - - lord of the rings fantasy lee christopher saruman kellan ian gandalf kurosawa akira seven samurai samurai mifune toshiro Kikuchiyo cameron john terminator sci-fi schwarzenegger arnold terminator terminator2 sci-fi schwarzenegger arnold terminator coen joel barton fink odd turturro john barton fink goodman john charlie meadows coen ethan barton fink odd turturro john barton fink goodman john charlie meadows star wars sci-fi lucas george US han solo ford harrison princess leia fisher carrie luke skywalker hamill mark darth vader earl-jones james prowse david obi-wan kenobi guiness alec attack of the clones sci-fi lucas george US obi-wan kenobi mcgregor ewan princess amigdala portman natalie braindead horror jackson peter new zealand - - - lord of the rings fantasy jackson peter new zealand saruman lee christopher gandalf kellan ian seven samurai samurai kurosawa akira japan Kikuchiyo mifune toshiro terminator sci-fi cameron john US terminator schwarzenegger arnold terminator2 sci-fi cameron john US terminator schwarzenegger arnold barton fink odd coen joel US coen ethan US barton fink turturro john charlie meadows goodman john isa dog mammal isa cat mammal isa mammal animal isa zebra horse isa horse mammal isa unicorn horse isa unicorn imaginary-animal instance-of rover dog instance-of whiskers cat instance-of spot dog parent-of spot rover ok 1 ok t/emptytag.t ......... 1..3 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:39 2024 # Current time GMT: Sun May 12 08:15:39 2024 # Using Test.pm version 1.31 foo 0 0 '(a (b "foo") (c "") (d "0") (e "0") (f "")) ok 1 ok 2 4 1 1 4 ok 3 ok t/get.t .............. 1..17 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:40 2024 # Current time GMT: Sun May 12 08:15:40 2024 # Using Test.pm version 1.31 ok 1 ok 2 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 10090 integral membrane protein S:HGNC Hfe HGNC Hfe WNT3A Wnt3a ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok t/handlers.t ......... 1..9 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:40 2024 # Current time GMT: Sun May 12 08:15:40 2024 # Using Test.pm version 1.31 CACHING HGNC CACHING Hfe house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe") (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (pair (symbol "WNT3A") (symbol "Wnt3a") (comment "Dunno what symbol WNT3A is") (comment "Dunno what symbol Wnt3a is")))) HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 ok 1 ok 2 ok 3 ok 4 '(gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090"))) ok 5 ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol tax_id phenotype phenotype GO_term map cytological chromosome band foo species common_name binomial tax_id gene symbol synonym tax_id GO_term species common_name binomial tax_id =>gene_set gene_set=>gene gene=>symbol gene=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band map=>foo gene=>species species=>common_name species=>binomial species=>tax_id gene_set=>gene gene=>symbol gene=>synonym gene=>tax_id gene=>GO_term gene=>species species=>common_name species=>binomial species=>tax_id ok t/handlers2.t ........ 1..9 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:41 2024 # Current time GMT: Sun May 12 08:15:41 2024 # Using Test.pm version 1.31 original: house mouse Mus musculus 10090 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 human Homo sapiens 9606 remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")))) ok 1 ok 2 ok 3 '( "") '( "") ok 4 ok 5 ok 6 ok 7 ok 8 '(set) ok 9 ok t/hashdb.t ........... 1..2 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:41 2024 # Current time GMT: Sun May 12 08:15:41 2024 # Using Test.pm version 1.31 '(species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) ok 1 HASHING HASHED gene: symbol: HGNC tax_id: 9606 phenotype: Hemochromatosis phenotype: Porphyria variegata GO_term: iron homeostasis map: cytological: chromosome: 6 band: p21.3 ok 2 ok t/homol.t ............ 1..9 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:42 2024 # Current time GMT: Sun May 12 08:15:42 2024 # Using Test.pm version 1.31 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 1 ok 2 ok 3 ok 4 ok 5 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol species common_name binomial tax_id phenotype phenotype GO_term map cytological chromosome band gene symbol synonym species common_name binomial tax_id GO_term =>gene_set gene_set=>gene gene=>symbol gene=>species species=>common_name species=>binomial species=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band gene_set=>gene gene=>symbol gene=>synonym gene=>species species=>common_name species=>binomial species=>tax_id gene=>GO_term ok t/parsestr.t ......... 1..6 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:42 2024 # Current time GMT: Sun May 12 08:15:42 2024 # Using Test.pm version 1.31 bar y ok 1 example of mixedcontent '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) ok 2 ok 3 ok 4 '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) TEXT '(yo (paragraph (@ (id "1")) (. "TEXT"))) ok 5 ok 6 ok t/qmatch.t ........... 1..9 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:43 2024 # Current time GMT: Sun May 12 08:15:43 2024 # Using Test.pm version 1.31 big dave
foo methyl
bar auchtermuchty
shuggy ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 1 2 2 ok 7 ok 8 2 ok 9 1 2 ok t/roundtrip-attrs.t .. 1..5 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:43 2024 # Current time GMT: Sun May 12 08:15:43 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 '(address (a (@ (href "mailto:cjm@fruitfly.org")) (. "fred"))) ok 4 Stag - Structured Tag Library

Stag - Structured Tag Library

top #000000 images/celtic-stag.gif The Stag project currently consists of two perl modules, both of which are available from http://www.cpan.orgCPANor http://sourceforge.net/projects/stagsourceforge:

Data::Stag

This module is for manipulating data as recursively nested tag/value pairs ( Structured tags or Simple Tree aggreggates). At this time there is only a perl implementation, http://search.cpan.org/perldoc?Data::StagData::Stag, but C and Lisp implementations are planned.



Stags can easily be represented as XML or as lisp-style S-expressions, or using the Stag native indented text format. They can also be represented in perl using nested arrays.

DBIx::DBStag

This module is for conversion between relational representations and hierarchical (Stag) representations. SQL query results are automatically decomposed into the relations and a hierarchical structure is inferred. This modules also allows you to create SQL templates - a powerful way of reusing SQL statements joining multiple tables.

http://search.cpan.org/perldoc?DBIx::DBStagDBIx::DBStag
#FF8888 http://www.godatabase.org/cgi-bin/ubiq/ubiq.cgiUBIQ Query Interface A demo of DBStag for mapping query results to hierarchical tag-value data. This interface provides WWW access to a number of bioinformatics databases (Gene Ontology, Ensembl, Chado, BioSQL, GadFly). Templates can be selected, or you can feed in your own SQL.
#FF8888 http://sourceforge.net/projects/stagStag project page on Sourceforge Here you can find the Stag CVS repository, mail lists, etc
#FF8888 http://www.fruitfly.org/~cjm/rel-talk/dbistag.htmlDBStag Tutorial Brief tutorial on basic DBStag usage for biological databases. (slightly out of date - some aspects of DBStag may have changed)
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::CookbookDBIx::DBStag::Cookbook DBStag cookbook - shows how to generate a normalised relational db from an XML source (the CIA world factbook), create your own SQL templates and build a WWW query interface
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::SQLTemplateDBIx::DBStag::SQLTemplate The POD manpage describing SQL templates - a powerful way of reusing complex SQL statements
#FF8888 stag-poster.htmlStag Poster DBStag poster from Genome Informatics 2003 at Cold Spring Harbor Laboratory (large image)
http://sourceforge.net SourceForge.net Logo http://sourceforge.net/sflogo.php?group_id=68482&type=1 0 88 31
mailto:cjm@fruitfly.orgfred
Last modified: Mon Apr 12 11:33:36 PDT 2004 mailto:cjm@fruitfly.org ok 5 ok t/set-attrs.t ........ 1..3 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:44 2024 # Current time GMT: Sun May 12 08:15:44 2024 # Using Test.pm version 1.31 '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222")) '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555"))) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555")) (person (name "fred") (phone_no "555-5555"))) jim 555-1111 555-2222 555-3333 555-4444 jim 555-1111 555-2222 555-3333 555-4444 ok 1 ok 2 ok 3 ok t/set.t .............. 1..2 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:45 2024 # Current time GMT: Sun May 12 08:15:45 2024 # Using Test.pm version 1.31 detective Sherlock Holmes secret agent James Bond detective Sherlock Holmes
Great Britain London 221B Baker Street
secret agent James Bond ok 1 detective Sherlock Holmes
Great Britain London 221B Baker Street
secret agent James Bond ok 2 ok t/sxpr.t ............. 1..2 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:45 2024 # Current time GMT: Sun May 12 08:15:45 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok t/unhash.t ........... 1..4 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:46 2024 # Current time GMT: Sun May 12 08:15:46 2024 # Using Test.pm version 1.31 James 30 Sarah
Hickory Street NY 10578 Katonah
NY 11291 The Manse 19 Chestnut Ln Garden City
James Hill 34 Sarah 30 James
Katonah 10578 NY Hickory Street
James Hill 34
NY 11291 The Manse 19 Chestnut Ln Garden City
The Manse 19 Chestnut Ln ok 1 Jill John Gerald blonde blue Fred Jill John Gerald blonde blue Fred Jill John Gerald ok 2 ok 3 ok 4 ok t/unset.t ............ 1..4 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:46 2024 # Current time GMT: Sun May 12 08:15:46 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok t/write.t ............ 1..1 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:47 2024 # Current time GMT: Sun May 12 08:15:47 2024 # Using Test.pm version 1.31 about to write to t/data/test.sxpr written!! '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein"))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe")) (pair (symbol "WNT3A") (symbol "Wnt3a")))) ok 1 ok t/xml1.t ............. 1..7 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:47 2024 # Current time GMT: Sun May 12 08:15:47 2024 # Using Test.pm version 1.31 shuggybus driver55 tamforklift driverchips ok 1 $VAR1 = { 'personset' => { 'person' => [ { 'name' => 'shuggy', 'job' => 'bus driver', 'age' => '55' }, { 'name' => 'tam', 'job' => 'forklift driver', 'favourite_food' => 'chips' } ] } }; shuggy bus driver 55 tam forklift driver chips shuggy bus driver 100 tam forklift driver chips checking.. shuggy bus driver 100 ok 2 ok 3 tam forklift driver chips ok 4 ok 5 ok 6 yyy tam forklift driver chips ok 7 ok t/xml2.t ............. 1..4 # Running under perl version 5.038002 for linux # Current time local: Sun May 12 08:15:48 2024 # Current time GMT: Sun May 12 08:15:48 2024 # Using Test.pm version 1.31 $VAR1 = bless( [ 'person', [ bless( [ 'name', 'davey' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'here' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'green' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'two' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 5 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'igor' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'ginger' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); $VAR1 = bless( [ 'person', [ bless( [ 'name', 'shuggy' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'there' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'red' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'three' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 1 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'thud' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'spud' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); shuggy
there
red three 1 thud spud desc green two 5 red three 1 ok 1 shuggy
there
red three 1 thud spud finding green haired people.. davey
here
green two 5 igor ginger ok 2 shuggy
there
red three 1 thud spud ok 3 '(a "") '(foo (bar "1")) ok 4 ok All tests successful. Files=20, Tests=102, 12 wallclock secs ( 0.88 usr 0.16 sys + 9.82 cusr 1.44 csys = 12.30 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libdata-stag-perl-0.14' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libdata-stag-perl-0.14' dh_auto_install make -j3 install DESTDIR=/build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/reproducible-path/libdata-stag-perl-0.14' Manifying 20 pod documents Manifying 27 pod documents Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLHandler.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Arr2HTML.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/JSONWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/HashDB.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseGenerator.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Base.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/DTDWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Simple.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/GraphHandler.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagI.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprParser.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PerlWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLTHandler.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Util.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLParser.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentWriter.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextParser.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentParser.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Writer.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SAX2Stag.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ChainHandler.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseHandler.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagDB.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PodParser.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagImpl.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/null.pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-db.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-findsubtree.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-splitter.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-merge.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-xml2itext.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-mogrify.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2xml.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-grep.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-parse.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2sxpr.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-diff.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2simple.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-handle.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-join.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-view.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-filter.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-flatten.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-query.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-autoschema.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-drawtree.pl.1p Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Arr2HTML.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLHandler.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLParser.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::GraphHandler.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SAX2Stag.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagDB.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprParser.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Simple.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ChainHandler.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::HashDB.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PodParser.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Writer.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextParser.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagImpl.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseGenerator.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLTHandler.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseHandler.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::JSONWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentParser.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::DTDWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::null.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PerlWriter.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag.3pm Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-grep.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-join.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-handle.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-view.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-merge.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-findsubtree.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-xml2itext.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-autoschema.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2simple.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-db.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2xml.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-splitter.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-mogrify.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-flatten.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-diff.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-parse.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2sxpr.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-query.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-filter.pl Installing /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-drawtree.pl make[2]: Leaving directory '/build/reproducible-path/libdata-stag-perl-0.14' file-rename 's/\.pl//' /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/* file-rename 's/\.pl//' /build/reproducible-path/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/*1p* make[1]: Leaving directory '/build/reproducible-path/libdata-stag-perl-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libdata-stag-perl' in '../libdata-stag-perl_0.14-3_all.deb'. dpkg-genbuildinfo --build=binary -O../libdata-stag-perl_0.14-3_armhf.buildinfo dpkg-genchanges --build=binary -O../libdata-stag-perl_0.14-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19046 and its subdirectories I: Current time: Sat May 11 20:16:26 -12 2024 I: pbuilder-time-stamp: 1715501786 Sun May 12 08:16:35 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Sun May 12 08:16:35 UTC 2024 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Sun May 12 08:19:22 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Sun May 12 08:19:25 UTC 2024 I: libdata-stag-perl_0.14-3_armhf.changes: Format: 1.8 Date: Sun, 12 Jun 2022 23:17:56 +0100 Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-3 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Jelmer Vernooij Description: libdata-stag-perl - module to manipulate Structured Tags datastructures Changes: libdata-stag-perl (0.14-3) unstable; urgency=medium . [ Salvatore Bonaccorso ] * Update Vcs-* headers for switch to salsa.debian.org . [ Debian Janitor ] * Bump debhelper from old 9 to 12. * Set debhelper-compat version in Build-Depends. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). . [ gregor herrmann ] * debian/watch: use uscan version 4. Checksums-Sha1: fb89ea5340491fea485f7c05a4a783c46e656a64 440516 libdata-stag-perl_0.14-3_all.deb 4dfea94b17759facf8598c85e007b45868207e2e 5646 libdata-stag-perl_0.14-3_armhf.buildinfo Checksums-Sha256: 54f4b5fe01098ccbd35a80c296481d504cadfc9d1fb76766f68074d388d92258 440516 libdata-stag-perl_0.14-3_all.deb ffc4d344dca42491deb396b9eea0936b936876afc589e168a6117ee4dea5f2b1 5646 libdata-stag-perl_0.14-3_armhf.buildinfo Files: 26ddf00e403878325a99821c81a58a22 440516 perl optional libdata-stag-perl_0.14-3_all.deb 47e2073fa4555b46d51216731012d805 5646 perl optional libdata-stag-perl_0.14-3_armhf.buildinfo Sun May 12 08:19:26 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_23-2652.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/libdata-stag-perl_0.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/libdata-stag-perl_0.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/libdata-stag-perl_0.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/b1/libdata-stag-perl_0.14-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.S32kVE1r/b2/libdata-stag-perl_0.14-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.361s) 0.361s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 717ms CPU time consumed: 718ms Sun May 12 08:49:28 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Sun May 12 08:49:28 UTC 2024 I: libdata-stag-perl from trixie built successfully and reproducibly on armhf. Sun May 12 08:49:32 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 12 08:49:32 UTC 2024 I: Submitting 8.0K b1/libdata-stag-perl_0.14-3_armhf.buildinfo.asc Sun May 12 08:49:49 UTC 2024 I: Submitting 8.0K b2/libdata-stag-perl_0.14-3_armhf.buildinfo.asc Sun May 12 08:50:19 UTC 2024 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Sun May 12 08:50:20 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 12 08:50:20 UTC 2024 I: Done submitting .buildinfo files. Sun May 12 08:50:20 UTC 2024 I: Removing signed libdata-stag-perl_0.14-3_armhf.buildinfo.asc files: removed './b1/libdata-stag-perl_0.14-3_armhf.buildinfo.asc' removed './b2/libdata-stag-perl_0.14-3_armhf.buildinfo.asc'