Thu Jul 25 20:40:04 UTC 2024 I: starting to build libbpp-raa/trixie/armhf on jenkins on '2024-07-25 20:39' Thu Jul 25 20:40:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_12/7617/console.log Thu Jul 25 20:40:04 UTC 2024 I: Downloading source for trixie/libbpp-raa=2.4.1-9 --2024-07-25 20:40:04-- http://deb.debian.org/debian/pool/main/libb/libbpp-raa/libbpp-raa_2.4.1-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2171 (2.1K) [text/prs.lines.tag] Saving to: ‘libbpp-raa_2.4.1-9.dsc’ 0K .. 100% 144M=0s 2024-07-25 20:40:04 (144 MB/s) - ‘libbpp-raa_2.4.1-9.dsc’ saved [2171/2171] Thu Jul 25 20:40:05 UTC 2024 I: libbpp-raa_2.4.1-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbpp-raa Binary: libbpp-raa-dev, libbpp-raa4t64 Architecture: any Version: 2.4.1-9 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-raa Vcs-Git: https://salsa.debian.org/med-team/libbpp-raa.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev Package-List: libbpp-raa-dev deb libdevel optional arch=any libbpp-raa4t64 deb libs optional arch=any Checksums-Sha1: 31eefa01d441b72db441e1f5e1fb0e07acc24717 83211 libbpp-raa_2.4.1.orig.tar.gz 1aa18f9ba40b5eb5932103b532d026bf172909f0 10836 libbpp-raa_2.4.1-9.debian.tar.xz Checksums-Sha256: 21ed87b5c0c80f5b1632493127b30a77ae92ac0853985c048f31bed5fd0fb301 83211 libbpp-raa_2.4.1.orig.tar.gz 87cd6c6b71211228986f5c5a8d19d13f4c3fd46b77a94196ec79b6b72a5cf408 10836 libbpp-raa_2.4.1-9.debian.tar.xz Files: 6ccf1fcd43852bb6d20959b0308fb754 83211 libbpp-raa_2.4.1.orig.tar.gz 0efe19f100cc6e1174c69ac3bc6d8852 10836 libbpp-raa_2.4.1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmaWcpcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFYgg/9E366q6ApQVAP30mXCWqj6wESEwHjm58X H9SiDe/wVLHBT2z8U4kpa5bZhbouNFyCmTlxOJiGRML6afYBxwY95C+/FZ+RMjXP 5cm74ZdngqtLxg//MVgDRrvxBBK4nFp+5/uhtX0fD9NpW0jRgLDTVSXmaJQ16dfl LB6KILk7TtFubmuUww4MIgnvK3OgwXlUFMqOb3704rLY8VrL9Ktt+CCypNDCfHsV FKqX1/dywFYPyeMQGGV44kq9kYBV4JXxQB1JvGEfH41ushLzyH3K0MVaIXLvTeF0 f+u6JuuW5atBaW7gYTuzDx7FLkalrv3txn09bUIAqy9VaRJ5Ul39Qge4poFdxNv8 lmmmgegyT1QyPFFv0oKJsTL6oeCuXXOCNkiWpzoirV5aGBLVPfDb8CqSqn9tF7rw v0hbcLubd9QUfc6To5TLHmMgGR/vDYvlv5BnZNQdzV74DjKi0ib5B3akjTTZgK5I jjtnnwNxq0nnMuFM7vhX2TOz3wrmSfNKRA/PJUbIkivh1Pb1UvbNe52cSaVUaYy2 CUN6LiVLvr+Yb6dQAtmoEIVG6GnStz5V8LmsMOc4M4NBq4jjAXYfkd1SIoCpEUJp vH/qY9NNHnIbwiXEBtd2uHs2mfQJVBFti7SohvH+XX8Ev1Ght1IuRDwYuj2UzvCx XBt6V6jjCT0= =CdQ8 -----END PGP SIGNATURE----- Thu Jul 25 20:40:05 UTC 2024 I: Checking whether the package is not for us Thu Jul 25 20:40:05 UTC 2024 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Thu Jul 25 20:40:05 UTC 2024 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Thu Jul 25 20:41:51 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 25 08:40:11 -12 2024 I: pbuilder-time-stamp: 1721940011 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-raa_2.4.1-9.dsc] I: copying [./libbpp-raa_2.4.1.orig.tar.gz] I: copying [./libbpp-raa_2.4.1-9.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jul 16 13:16:07 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-raa_2.4.1-9.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-raa in libbpp-raa-2.4.1 dpkg-source: info: unpacking libbpp-raa_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-raa_2.4.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20621/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7f0361bae97944c4913fa97d13d50c17' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20621' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/pbuilderrc_csBB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/b1 --logfile b1/build.log libbpp-raa_2.4.1-9.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-23-arm64 #1 SMP Debian 6.1.99-1 (2024-07-15) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20621/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-5 [55.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-5 [863 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-1 [195 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-1 [87.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-1 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2.1 [304 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.2-1 [29.7 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.2-1 [75.5 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.2-1 [281 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.2-1 [113 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-2 [162 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.62.1-2 [63.7 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-5 [199 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.8.0-4 [399 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-5 [134 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.6-1 [2168 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.6-1 [5216 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf d-shlibs all 0.106 [10.9 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-1 [1479 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf debhelper all 13.16 [891 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libbpp-core4t64 armhf 2.4.1-13 [525 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libbpp-core-dev armhf 2.4.1-13 [958 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libbpp-seq12t64 armhf 2.4.1-12 [438 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libbpp-seq-dev armhf 2.4.1-12 [742 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Fetched 33.3 MB in 1s (49.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_armhf.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-1_armhf.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-1_armhf.deb ... Unpacking bsdextrautils (2.40.2-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-2_armhf.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.29.6-1) ... Setting up debhelper (13.16) ... Processing triggers for libc-bin (2.39-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbpp-raa-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-raa_2.4.1-9_source.changes dpkg-buildpackage: info: source package libbpp-raa dpkg-buildpackage: info: source version 2.4.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.3.0 -- The CXX compiler identification is GNU 13.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3.1") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles 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'/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' [ 16%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o [ 16%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o [ 16%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp [ 27%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c [ 38%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o [ 38%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ [ 44%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c [ 50%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c [ 55%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c [ 61%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp [ 66%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c [ 72%] Linking CXX static library libbpp-raa.a cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-raa-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-raa.a "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o" /usr/bin/ranlib libbpp-raa.a make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' [ 72%] Built target bpp-raa-static [ 77%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ [ 83%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c [ 88%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c [ 94%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c [100%] Linking CXX shared library libbpp-raa.so cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-raa.so.4 -o libbpp-raa.so.4.0.0 "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o" /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-raa.so.4.0.0 libbpp-raa.so.4 libbpp-raa.so make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' [100%] Built target bpp-raa-shared make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/libbpp-raa-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-raa/bpp-raa-config.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-raa/bpp-raa-config-version.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.a -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.so.4.0.0 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.so.4 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.so -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA_acnuc.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSpeciesTree.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/parser.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaList.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSeqAttributes.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-raa/bpp-raa-targets.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-raa/bpp-raa-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbpp-raa-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-raa4t64/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.a debian/libbpp-raa-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.so debian/libbpp-raa-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.so.4 debian/libbpp-raa4t64/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-raa.so.4.0.0 debian/libbpp-raa4t64/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-raa-dev PKGSHL=libbpp-raa4t64 install -d -m 755 debian/libbpp-raa-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-raa-dev/usr/include install -d -m 755 debian/libbpp-raa-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-raa-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-raa4t64/usr/lib/arm-linux-gnueabihf/libbpp-raa.so.4.0.0 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-raa-dev' in '../libbpp-raa-dev_2.4.1-9_armhf.deb'. dpkg-deb: building package 'libbpp-raa4t64' in '../libbpp-raa4t64_2.4.1-9_armhf.deb'. dpkg-deb: building package 'libbpp-raa4t64-dbgsym' in '../libbpp-raa4t64-dbgsym_2.4.1-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-raa_2.4.1-9_armhf.buildinfo dpkg-genchanges --build=binary -O../libbpp-raa_2.4.1-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20621 and its subdirectories I: Current time: Thu Jul 25 08:41:45 -12 2024 I: pbuilder-time-stamp: 1721940105 Thu Jul 25 20:41:54 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32b-armhf-rb.debian.net. Thu Jul 25 20:41:54 UTC 2024 I: Preparing to do remote build '2' on virt32b-armhf-rb.debian.net. Thu Jul 25 20:43:26 UTC 2024 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. Thu Jul 25 20:43:28 UTC 2024 I: libbpp-raa_2.4.1-9_armhf.changes: Format: 1.8 Date: Tue, 16 Jul 2024 15:05:05 +0200 Source: libbpp-raa Binary: libbpp-raa-dev libbpp-raa4t64 libbpp-raa4t64-dbgsym Architecture: armhf Version: 2.4.1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbpp-raa-dev - Bio++ Remote Acnuc Access library development files libbpp-raa4t64 - Bio++ Remote Acnuc Access library Closes: 1075152 Changes: libbpp-raa (2.4.1-9) unstable; urgency=medium . * Since every GCC version bump ends up in a bug caused by the need to update symbols files we stop providing symbols for this library Closes: #1075152 * lintian-override for no-symbols-control-file * Standards-Version: 4.7.0 Checksums-Sha1: 6a09474dc244fcbd058181556f13a442401d1137 62172 libbpp-raa-dev_2.4.1-9_armhf.deb 1a7d34c2b27c0c89347617fdcdf0f7fb406957f5 237944 libbpp-raa4t64-dbgsym_2.4.1-9_armhf.deb 39bfa0540f3d11b0aff9ae345778963cf0059f96 45108 libbpp-raa4t64_2.4.1-9_armhf.deb 6ee38f26307df25a525bee098fce733aa9760a9e 6640 libbpp-raa_2.4.1-9_armhf.buildinfo Checksums-Sha256: 63a81c83613c798b409eb21aee96a08ab5d2bbc55182df083f896e8d39f3ec5a 62172 libbpp-raa-dev_2.4.1-9_armhf.deb 3c072e8b71f764f225a881048396d42222a1f4b71edb9c9c68a369112b19a40b 237944 libbpp-raa4t64-dbgsym_2.4.1-9_armhf.deb 2ae4644631c1ce7d408f33810351c6d8f6fa2e4d0ffdd225b79bcd49ee6c3a4e 45108 libbpp-raa4t64_2.4.1-9_armhf.deb fb3abab7cf13af183011cb83a96561b8fb7b78f3f9730aa53a20cf3da5ec5a00 6640 libbpp-raa_2.4.1-9_armhf.buildinfo Files: 1260bbc1bf75005dbf7fa70bb70bfed0 62172 libdevel optional libbpp-raa-dev_2.4.1-9_armhf.deb f974995db650050ee99c6af5785d5eb2 237944 debug optional libbpp-raa4t64-dbgsym_2.4.1-9_armhf.deb 544e0a895f4d05e4d6fd90b012591a07 45108 libs optional libbpp-raa4t64_2.4.1-9_armhf.deb da1d2283e637ca9b53ac56747ad25483 6640 science optional libbpp-raa_2.4.1-9_armhf.buildinfo Thu Jul 25 20:43:29 UTC 2024 I: diffoscope 272 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_12-7617.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/libbpp-raa_2.4.1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/libbpp-raa_2.4.1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/libbpp-raa_2.4.1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/b1/libbpp-raa_2.4.1-9_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.gl2XsYEk/b2/libbpp-raa_2.4.1-9_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.451s) 0.451s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 863ms CPU time consumed: 856ms Thu Jul 25 20:59:33 UTC 2024 I: diffoscope 272 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 25 20:59:33 UTC 2024 I: libbpp-raa from trixie built successfully and reproducibly on armhf. Thu Jul 25 20:59:37 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jul 25 20:59:37 UTC 2024 I: Submitting 8.0K b1/libbpp-raa_2.4.1-9_armhf.buildinfo.asc Thu Jul 25 20:59:45 UTC 2024 I: Submitting 8.0K b2/libbpp-raa_2.4.1-9_armhf.buildinfo.asc Thu Jul 25 21:00:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 25 21:00:01 UTC 2024 I: Done submitting .buildinfo files. Thu Jul 25 21:00:01 UTC 2024 I: Removing signed libbpp-raa_2.4.1-9_armhf.buildinfo.asc files: removed './b1/libbpp-raa_2.4.1-9_armhf.buildinfo.asc' removed './b2/libbpp-raa_2.4.1-9_armhf.buildinfo.asc'