Wed Nov 27 21:50:42 UTC 2024 I: starting to build libbio-tools-run-alignment-clustalw-perl/trixie/armhf on jenkins on '2024-11-27 21:50' Wed Nov 27 21:50:42 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_31/9123/console.log Wed Nov 27 21:50:42 UTC 2024 I: Downloading source for trixie/libbio-tools-run-alignment-clustalw-perl=1.7.4-4 --2024-11-27 21:50:42-- http://deb.debian.org/debian/pool/main/libb/libbio-tools-run-alignment-clustalw-perl/libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2514 (2.5K) [text/prs.lines.tag] Saving to: ‘libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc’ 0K .. 100% 331M=0s 2024-11-27 21:50:42 (331 MB/s) - ‘libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc’ saved [2514/2514] Wed Nov 27 21:50:42 UTC 2024 I: libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-tools-run-alignment-clustalw-perl Binary: libbio-tools-run-alignment-clustalw-perl Architecture: all Version: 1.7.4-4 Maintainer: Debian Perl Group Uploaders: David Miguel Susano Pinto Homepage: https://metacpan.org/release/Bio-Tools-Run-Alignment-Clustalw Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-clustalw-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-clustalw-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: clustalw, libbio-perl-perl , libbio-perl-run-perl , libdevel-checkbin-perl, perl Package-List: libbio-tools-run-alignment-clustalw-perl deb science optional arch=all Checksums-Sha1: 926fde7762db2c2e9aa3d94295fb8cf7c9994cc7 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz afbecfb4e13107fbe55b65b6f1ca32b17bf9f32b 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz Checksums-Sha256: 4e322d50fd945257f61609ed6e59c3e6817948166a6230d24d5ca23b507e331e 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz 965f00a501de21962ec1c853012d0e89fd5bec0b918d69920379a8ea26a1dd67 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz Files: 6820fcb8ca70c5fd75baa4bf979ab274 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz f5d8d608554a3ceae1819305ee47bb80 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXu9bMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGdLA/+KHzyYHubnj2tsx76crDPlYFPAwdMf4Rf Q6kOTqKh1HuGOGRhG2pFnBhsyurL05T4s2hUiu5zlOiDzqASe4nsKP7Gd8N6BvF9 A8FT7wOC1vMT9+cI39tOG8YfiakzB8/6kXYQ8wF1xRTtXJPQyzLRr+kosM+5dSzA 6w1Xe96GhgVQHOtVfLAhazxeR8GG1RW79uUFVNWR/4uh4XSBViF7cXF/8rke8WH8 hVHVw4cplZrMt9LjJUZDVt/H9obQmux6KwQzMbqT0LGQQo/B/aVJ9yxFoSDh6Qz+ poirqWbe4lJ+A9qrL8ucR/Zc1Q9jCDt6AQ4ADsGzVFuZzUQBeX6yVaW3UndpqToT c5Ei8+sjpT1V5yZPu9SZb8XA6C/28pxwdDVTtdL9AC0RFcyFsNO99HkAUhLJtWy5 9eV8K2HgF+1Bgvolf1PRK0PzDKDJjx6m2OwBHuNLYL9gSc/IJ4d3F44nd7h7ZzgZ yqvAgkeIuz3F3xmbFbHYChmt/qAiyiphazU9PxFH0d5LfuDjX0XOlXSViymdPNnG YZZnG7PujaPDdoHFz48hvzc9Wjkxz+8KOsVV3fO/g3OQnPqEuYA9dUzQ9dNMHb6x G1vasw0iMLJf5IuCoGFbPujqhcwcNTsOuT2Vf20vqDUrOn5ga66MUbxsHEP8yK78 wl3baI4oUds= =v2/Q -----END PGP SIGNATURE----- Wed Nov 27 21:50:42 UTC 2024 I: Checking whether the package is not for us Wed Nov 27 21:50:42 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Wed Nov 27 21:50:42 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Wed Nov 27 21:51:48 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 27 09:50:49 -12 2024 I: pbuilder-time-stamp: 1732744249 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc] I: copying [./libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz] I: copying [./libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 11 12:14:43 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc: no acceptable signature found dpkg-source: info: extracting libbio-tools-run-alignment-clustalw-perl in libbio-tools-run-alignment-clustalw-perl-1.7.4 dpkg-source: info: unpacking libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doc-typos.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18259/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='256ccc9df230430abcb2031a2cf34e07' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18259' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MSb2tkI5/pbuilderrc_rST4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MSb2tkI5/b1 --logfile b1/build.log libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/18259/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), clustalw, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19689 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-run-perl; however: Package libbio-perl-run-perl is not installed. pbuilder-satisfydepends-dummy depends on libdevel-checkbin-perl; however: Package libdevel-checkbin-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-perl-run-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-checkbin-perl{a} libelf1t64{a} libfile-sort-perl{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-pty-perl{a} libio-string-perl{a} libipc-run-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libace-perl libalgorithm-diff-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After unpacking 82.1 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: clustalw which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-perl-run-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-checkbin-perl{a} libelf1t64{a} libfile-sort-perl{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-pty-perl{a} libio-string-perl{a} libipc-run-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libace-perl libalgorithm-diff-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After unpacking 82.1 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18259 and its subdirectories Wed Nov 27 21:51:51 UTC 2024 W: No second build log, what happened? Wed Nov 27 21:51:51 UTC 2024 W: Downloading the build dependencies failed Wed Nov 27 21:51:51 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed Nov 27 21:51:51 UTC 2024 W: Network problems are automatically rescheduled after some hours.