Mon Mar 25 07:38:59 UTC 2024 I: starting to build libbio-primerdesigner-perl/trixie/armhf on jenkins on '2024-03-25 07:38' Mon Mar 25 07:38:59 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_13/1010/console.log Mon Mar 25 07:38:59 UTC 2024 I: Downloading source for trixie/libbio-primerdesigner-perl=0.07-8 --2024-03-25 07:38:59-- http://deb.debian.org/debian/pool/main/libb/libbio-primerdesigner-perl/libbio-primerdesigner-perl_0.07-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2397 (2.3K) [text/prs.lines.tag] Saving to: ‘libbio-primerdesigner-perl_0.07-8.dsc’ 0K .. 100% 6.82M=0s 2024-03-25 07:38:59 (6.82 MB/s) - ‘libbio-primerdesigner-perl_0.07-8.dsc’ saved [2397/2397] Mon Mar 25 07:38:59 UTC 2024 I: libbio-primerdesigner-perl_0.07-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-8 Maintainer: Debian Perl Group Uploaders: gregor herrmann , Charles Plessy Homepage: https://metacpan.org/release/Bio-PrimerDesigner Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libmodule-build-perl Build-Depends-Indep: perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr Package-List: libbio-primerdesigner-perl deb perl optional arch=all Checksums-Sha1: 11eedf053c8a1a356ab0d75e78719e877ed6888c 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz b839fee1146120a9f9b14fed04d222ce8d79fda7 5756 libbio-primerdesigner-perl_0.07-8.debian.tar.xz Checksums-Sha256: 871b2dbd86e11721d01924e13d7598fc2ec0573f747a2f2297e33d6f30be7908 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz ed4577dd9aa45428d2c58a233b9a281e8d3dbb98537fc5a3f0eadfe5b0237d3a 5756 libbio-primerdesigner-perl_0.07-8.debian.tar.xz Files: 356e05bc5d855d2942c2825540c6eb05 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz 65ec9b42f86209466bedbc28a4678bba 5756 libbio-primerdesigner-perl_0.07-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+ycyoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHsEQ//dHvmbWyUbjGufZiphNIayb5RTHjDWlM8 FjdgykxxnRPjPtGAaQs0JeGri/VrzM80qFe7sLwgSTYC5JrmVQiIxewALtJ1qPO2 LOA2IVvyrrO4HuUX8lmaGT5G5dK2oRuqWtNetEPBKUheX2gieX/Rni/+uUgkc74f QiZVJfAYXSs/632RL8BEYt8S5gP3ZFI4XYxLz1tCyDxabCubTTpPJDpSkftylbnS 7ewBN0qW5rZJMSGptzn1DeHbMPumGsleTmEn0Wi5hm/4mfvQBxq1HqEFD/BstHhO JzjmVY9CLpWF2T7BwQgWL4zX2hKe4JhRxF7xbcuL+j0algej23tnZCbnhe/TkY57 XStwMtFEb+w/fBzjkYcEWbVIti4GzTMcNHJpkzqJbrpK/3S2QC9GzXPvDnLVVRnc q3KfJUtGsE2gjAz9vZVUp8F921xOYXKd/HqEY+d1olEFG7loL9lYu1TOFBXqBBDM otQGJ10TAspWGDdZec3QXE3VogNk9sNmGb5Fx5AGVEFnZU89bmwZqRjF7OOpM7fA eu1lwcPeM3a3Kq4CqNioEwMQwe85kjNbo+MOrH60SjmJIwo5fGqA97j9KMI17S+a KBkwuptSKYiCFXz1e+pmYBP5iN+pgDWXFuE39hXlh/k/0k0OGy08u+BcSv/JbpoM agB51cTjYb8= =ITYm -----END PGP SIGNATURE----- Mon Mar 25 07:38:59 UTC 2024 I: Checking whether the package is not for us Mon Mar 25 07:38:59 UTC 2024 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Mon Mar 25 07:38:59 UTC 2024 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Mon Mar 25 07:41:39 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 24 19:39:07 -12 2024 I: pbuilder-time-stamp: 1711352347 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-primerdesigner-perl_0.07-8.dsc] I: copying [./libbio-primerdesigner-perl_0.07.orig.tar.gz] I: copying [./libbio-primerdesigner-perl_0.07-8.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 16 12:40:10 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-primerdesigner-perl_0.07-8.dsc: no acceptable signature found dpkg-source: info: extracting libbio-primerdesigner-perl in libbio-primerdesigner-perl-0.07 dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07.orig.tar.gz dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.pl-getopt-long.patch dpkg-source: info: applying no-hash-manipulation-inside-each.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9850/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='d971dc7eda2641d4aade648e686be705' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9850' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/pbuilderrc_yPce --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/b1 --logfile b1/build.log libbio-primerdesigner-perl_0.07-8.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 24 11:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9850/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libmodule-build-perl, perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-base-perl; however: Package libclass-base-perl is not installed. pbuilder-satisfydepends-dummy depends on libreadonly-perl; however: Package libreadonly-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-perl; however: Package libtest-pod-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-coverage-perl; however: Package libtest-pod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on primer3; however: Package primer3 is not installed. pbuilder-satisfydepends-dummy depends on ncbi-epcr; however: Package ncbi-epcr is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libclass-base-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-symdump-perl{a} libelf1{a} libencode-locale-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libpod-coverage-perl{a} libpod-parser-perl{a} libreadonly-perl{a} libsub-override-perl{a} libtest-pod-coverage-perl{a} libtest-pod-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} ncbi-epcr{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} primer3{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libdata-dump-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx wget 0 packages upgraded, 65 newly installed, 0 to remove and 0 not upgraded. Need to get 21.9 MB of archives. After unpacking 77.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.1.5-1 [1208 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.14.1 [85.6 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf debhelper all 13.14.1 [890 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libclass-base-perl all 0.09-2 [17.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libfile-listing-perl all 6.16-1 [12.4 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf liburi-perl all 5.27-1 [98.4 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libhtml-parser-perl armhf 3.81-1+b1 [95.8 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libhtml-tree-perl all 5.07-3 [211 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libhttp-message-perl all 6.45-1 [82.0 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf perl-openssl-defaults armhf 7+b1 [7916 B] Get: 51 http://deb.debian.org/debian trixie/main armhf libnet-ssleay-perl armhf 1.94-1 [318 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libnet-http-perl all 6.23-1 [23.9 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libwww-perl all 6.77-1 [183 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libmodule-build-perl all 0.423400-2 [252 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libpod-parser-perl all 1.67-1 [94.1 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libpod-coverage-perl all 0.23-2 [22.1 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libreadonly-perl all 2.050-3 [23.1 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libtest-pod-coverage-perl all 1.10-3 [14.9 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libtest-pod-perl all 1.52-3 [12.6 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf ncbi-epcr armhf 2.3.12-1-9 [148 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf primer3 armhf 2.6.1-4 [182 kB] Fetched 21.9 MB in 1s (23.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.1.5-1_armhf.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../05-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... 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Setting up libpipeline1:armhf (1.5.7-1+b2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libclone-perl:armhf (0.46-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.14.1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtest-pod-perl (1.52-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up perl-openssl-defaults:armhf (7+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2+b1) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up libreadonly-perl (2.050-3) ... Setting up primer3 (2.6.1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... 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Setting up libwww-perl (6.77-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-primerdesigner-perl-0.07/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-primerdesigner-perl_0.07-8_source.changes dpkg-buildpackage: info: source package libbio-primerdesigner-perl dpkg-buildpackage: info: source version 0.07-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=perl_build dh_auto_clean -O--buildsystem=perl_build dh_autoreconf_clean -O--buildsystem=perl_build dh_clean -O--buildsystem=perl_build debian/rules binary dh binary --buildsystem=perl_build dh_update_autotools_config -O--buildsystem=perl_build dh_autoreconf -O--buildsystem=perl_build dh_auto_configure -O--buildsystem=perl_build /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/build/reproducible-path/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro" Use of uninitialized value $url in concatenation (.) or string at Build.PL line 62, <$in_fh> line 42. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-PrimerDesigner' version '0.04' Now run './Build' and './Build install' dh_auto_build -O--buildsystem=perl_build /usr/bin/perl Build Building Bio-PrimerDesigner debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libbio-primerdesigner-perl-0.07' RES_OPTIONS=attempts:0 dh_auto_test -- --test_files "t/epcr.t t/pod-coverage.t t/pod.t t/primer3.t t/primer_designer.t t/result.t t/tables.t" /usr/bin/perl Build test --verbose 1 --test_files "t/epcr.t t/pod-coverage.t t/pod.t t/primer3.t t/primer_designer.t t/result.t t/tables.t" Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/epcr.t ............. 1..8 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 4 - binary_name is "e-PCR" ok 5 - program returns params ok 6 - program returns no aliases ok 7 - e-PCR verification fails with no args ok 8 - run method fails with no arguments ok t/pod-coverage.t ..... 1..8 ok 1 - Pod coverage on Bio::PrimerDesigner ok 2 - Pod coverage on Bio::PrimerDesigner::Remote ok 3 - Pod coverage on Bio::PrimerDesigner::ispcr ok 4 - Pod coverage on Bio::PrimerDesigner::Config ok 5 - Pod coverage on Bio::PrimerDesigner::Tables ok 6 - Pod coverage on Bio::PrimerDesigner::epcr ok 7 - Pod coverage on Bio::PrimerDesigner::Result ok 8 - Pod coverage on Bio::PrimerDesigner::primer3 ok t/pod.t .............. 1..9 ok 1 - POD test for blib/lib/Bio/PrimerDesigner.pm ok 2 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm ok 3 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm ok 4 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm ok 5 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm ok 6 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm ok 7 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm ok 8 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm ok 9 - POD test for blib/script/primer_designer ok Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer3.t .......... 1..7 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::primer3' ok 4 - binary_name is "primer3" ok 5 - program returns params ok 6 - program returns aliases ok 7 - design method fails without arguments ok Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer_designer.t .. 1..22 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - An object of class 'Bio::PrimerDesigner::primer3' isa 'Bio::PrimerDesigner::primer3' ok 4 - Default method for unix-like OS is "local" ok 5 - Default binary path for unix-like OS is "/usr/local/bin" ok 6 - binary_path set to "/bin" ok 7 - binary_path rejects bad arg ok 8 - Error message set ok 9 - binary_path remembers last good arg ok 10 - 'object with args' isa 'Bio::PrimerDesigner' ok 11 - method is "remote" ok 12 - url is "https://www.google.com/" ok 13 - An object of class 'Bio::PrimerDesigner::epcr' isa 'Bio::PrimerDesigner::epcr' ok 14 - method set to "remote" ok 15 - method rejects bad arg ok 16 - Error message set ok 17 - method remembers last good arg ok 18 - url set to "http://www.google.com" ok 19 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 20 - program rejects bad arg ok 21 - Error message set ok 22 - 'program still' isa 'Bio::PrimerDesigner::epcr' ok Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/result.t ........... 1..3 ok 1 - use Bio::PrimerDesigner; ok 2 # skip Can't get remote server call to work ok 3 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/reproducible-path/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/tables.t ........... 1..10 ok 1 - use Bio::PrimerDesigner::Tables; ok 2 - An object of class 'Bio::PrimerDesigner::Tables' isa 'Bio::PrimerDesigner::Tables' ok 3 # skip Can't get remote server call to work ok 4 # skip Can't get remote server call to work ok 5 # skip Can't get remote server call to work ok 6 # skip Can't get remote server call to work ok 7 # skip Can't get remote server call to work ok 8 # skip Can't get remote server call to work ok 9 # skip Can't get remote server call to work ok 10 # skip Can't get remote server call to work ok All tests successful. Files=7, Tests=67, 6 wallclock secs ( 0.18 usr 0.08 sys + 5.54 cusr 0.52 csys = 6.32 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-primerdesigner-perl-0.07' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=perl_build dh_prep -O--buildsystem=perl_build debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libbio-primerdesigner-perl-0.07' dh_auto_install /usr/bin/perl Build install --destdir /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl --create_packlist 0 Building Bio-PrimerDesigner Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man1/primer_designer.1p Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Config.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Result.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm Installing /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/bin/primer_designer # remove empty manpage without whatis entry rm -f -v /build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm removed '/build/reproducible-path/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm' make[1]: Leaving directory '/build/reproducible-path/libbio-primerdesigner-perl-0.07' dh_installdocs -O--buildsystem=perl_build dh_installchangelogs -O--buildsystem=perl_build dh_installman -O--buildsystem=perl_build dh_installsystemduser -O--buildsystem=perl_build dh_perl -O--buildsystem=perl_build dh_link -O--buildsystem=perl_build dh_strip_nondeterminism -O--buildsystem=perl_build dh_compress -O--buildsystem=perl_build dh_fixperms -O--buildsystem=perl_build dh_missing -O--buildsystem=perl_build dh_installdeb -O--buildsystem=perl_build dh_gencontrol -O--buildsystem=perl_build dh_md5sums -O--buildsystem=perl_build dh_builddeb -O--buildsystem=perl_build dpkg-deb: building package 'libbio-primerdesigner-perl' in '../libbio-primerdesigner-perl_0.07-8_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-primerdesigner-perl_0.07-8_armhf.buildinfo dpkg-genchanges --build=binary -O../libbio-primerdesigner-perl_0.07-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9850 and its subdirectories I: Current time: Sun Mar 24 19:41:30 -12 2024 I: pbuilder-time-stamp: 1711352490 Mon Mar 25 07:41:44 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32b-armhf-rb.debian.net. Mon Mar 25 07:41:44 UTC 2024 I: Preparing to do remote build '2' on virt32b-armhf-rb.debian.net. Mon Mar 25 07:44:09 UTC 2024 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. Mon Mar 25 07:44:11 UTC 2024 I: libbio-primerdesigner-perl_0.07-8_armhf.changes: Format: 1.8 Date: Mon, 16 Nov 2020 12:51:28 +0100 Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-8 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-primerdesigner-perl - Perl module to design PCR primers using primer3 and epcr Changes: libbio-primerdesigner-perl (0.07-8) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 52420ef8841460a4ee5459ebec0b5cdcabdaf495 37700 libbio-primerdesigner-perl_0.07-8_all.deb 3a96ef5d079ba42f562f0b52056262962ad0f224 6190 libbio-primerdesigner-perl_0.07-8_armhf.buildinfo Checksums-Sha256: c517e77ed5d4b106527c3ab6eb03ebff6480c1de71185e99c4399d2276ae003f 37700 libbio-primerdesigner-perl_0.07-8_all.deb f1564547d9039c518197c3e466df5452507baccc70aa7f7fbefb5806eae379e3 6190 libbio-primerdesigner-perl_0.07-8_armhf.buildinfo Files: 2293aff56ce7a890744ba06cdc73cede 37700 perl optional libbio-primerdesigner-perl_0.07-8_all.deb 79f778c5b95425c378f94b65392d8739 6190 perl optional libbio-primerdesigner-perl_0.07-8_armhf.buildinfo Mon Mar 25 07:44:12 UTC 2024 I: diffoscope 261 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_13-1010.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/libbio-primerdesigner-perl_0.07-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/libbio-primerdesigner-perl_0.07-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/libbio-primerdesigner-perl_0.07-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/b1/libbio-primerdesigner-perl_0.07-8_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.0MWxUxuv/b2/libbio-primerdesigner-perl_0.07-8_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.320s) 0.320s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 626ms CPU time consumed: 626ms Mon Mar 25 07:44:13 UTC 2024 I: diffoscope 261 found no differences in the changes files, and a .buildinfo file also exists. Mon Mar 25 07:44:13 UTC 2024 I: libbio-primerdesigner-perl from trixie built successfully and reproducibly on armhf. Mon Mar 25 07:44:15 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Mar 25 07:44:15 UTC 2024 I: Submitting 8.0K b1/libbio-primerdesigner-perl_0.07-8_armhf.buildinfo.asc Mon Mar 25 07:44:15 UTC 2024 I: Submitting 8.0K b2/libbio-primerdesigner-perl_0.07-8_armhf.buildinfo.asc Mon Mar 25 07:44:16 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Mar 25 07:44:16 UTC 2024 I: Done submitting .buildinfo files. Mon Mar 25 07:44:16 UTC 2024 I: Removing signed libbio-primerdesigner-perl_0.07-8_armhf.buildinfo.asc files: removed './b1/libbio-primerdesigner-perl_0.07-8_armhf.buildinfo.asc' removed './b2/libbio-primerdesigner-perl_0.07-8_armhf.buildinfo.asc'