Sun Oct 27 09:23:01 UTC 2024 I: starting to build kineticstools/trixie/armhf on jenkins on '2024-10-27 09:22' Sun Oct 27 09:23:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_8/11154/console.log Sun Oct 27 09:23:01 UTC 2024 I: Downloading source for trixie/kineticstools=0.6.1+git20220223.1326a4d+dfsg-3 --2024-10-27 09:23:02-- http://deb.debian.org/debian/pool/main/k/kineticstools/kineticstools_0.6.1%2bgit20220223.1326a4d%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2741 (2.7K) [text/prs.lines.tag] Saving to: ‘kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc’ 0K .. 100% 272M=0s 2024-10-27 09:23:02 (272 MB/s) - ‘kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc’ saved [2741/2741] Sun Oct 27 09:23:02 UTC 2024 I: kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kineticstools Binary: kineticstools, kineticstools-data, python3-kineticstools Architecture: any all Version: 0.6.1+git20220223.1326a4d+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/PacificBiosciences/kineticsTools Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/kineticstools Vcs-Git: https://salsa.debian.org/med-team/kineticstools.git Testsuite: autopkgtest Testsuite-Triggers: hdf5-tools, make, python3-cram, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools , python3-pytest , python3-pytest-runner , python3-pytest-xdist Package-List: kineticstools deb science optional arch=all kineticstools-data deb science optional arch=all python3-kineticstools deb python optional arch=any Checksums-Sha1: 85654046ecd0a08535d85ddc2513a27e338d3aa5 21772620 kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz a197269ee5c42efa52f931b6c418542215c4dc2e 10400 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz Checksums-Sha256: c120e21be482516be94a44b19c1901e563ba1d2eef34af4273a219e78dcecbbd 21772620 kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz a451b5cf62c64423fc0a2cc33b498460f8b2a6d88ac25a3f0eddc1fb5537b796 10400 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz Files: ce6810e2c6dd2abe5b525abab95370ea 21772620 kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz aeff0432b9d9816ddb70588a07e9b515 10400 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmcL6RQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGtPQ/5AbPxC+7NbZpG/dlrjj2EkdBPtTzuvAf4 jDNzvO4a4bevVLHbxEKmU96FlnNKuy7vCoOYHQZV67rCISCvdXF/pEbGEwnrCQ5t ZE2BB9Bw7nw6sOXTq5EXXc4OvO1hWysneN61ud0e6Cj/6GpRCMNoOlF6PWxboKNI d8xnweI3FJncOz3MkiK839cKFFqB7I08B5DNSSL0yoeOk3BpHTBuXo46mEBNNq8i Qmduuhvl0KCKS7M0B0Ji58pGNG8TEai67rofCUqLkF0Twj7XTf73v5u9mgp0aFk0 c/G48XXigtINZYQwfTc2oWrK7sezwqWg/qywYwRKdgCvydkFvDVXy30/5bT5SFPs jYqctFEjh6A52QfBKMYnbspK8gFJBVrNIL9swaEG4uaEvgbuIlujpxpDDT8dlZqj 2mnHCxYfmkA4WuLg3ENQU9eiUcI2hXlk/E+MZAKC6sYm9oNWGr4JnaeuP65OSC90 JQj2dv7Ql3scaI2ZFBcQmGDGsknM7+i29NBlACAWVJH+kB/C/k31urReCqHK7Cm2 xyuW6MDpRbI96InK7MHU1Sn6M/ZREIH8HSot052jVbkbA9dGSBWX9Cn+RnkQj5ic p9z/5wxtwsP3+V13nKaUs4NKFQJlQrLdmcQgJ79qlT2YFYghyCVQlNN7XTF52eOC qmElCvwn68s= =ocM3 -----END PGP SIGNATURE----- Sun Oct 27 09:23:02 UTC 2024 I: Checking whether the package is not for us Sun Oct 27 09:23:02 UTC 2024 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Sun Oct 27 09:23:02 UTC 2024 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Sun Oct 27 09:33:14 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 26 21:23:28 -12 2024 I: pbuilder-time-stamp: 1730021008 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc] I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz] I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 13 15:36:52 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting kineticstools in kineticstools-0.6.1+git20220223.1326a4d+dfsg dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-pages.patch dpkg-source: info: applying tests-import.patch dpkg-source: info: applying verbose-testing.patch dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying tests2to3.patch dpkg-source: info: applying man-align-cols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6921/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='866dafdc91b843c683c7bf41967e8e39' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6921' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/pbuilderrc_Ooxr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/b1 --logfile b1/build.log kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/6921/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19668 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcore; however: Package python3-pbcore is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcommand; however: Package python3-pbcommand is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-uritools; however: Package python3-uritools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-autocommand{a} python3-avro{a} python3-biopython{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-docutils{a} python3-execnet{a} python3-freetype{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iso8601{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-uritools{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 85.8 MB of archives. After unpacking 298 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.6-1 [800 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.6-1 [1812 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.6-1 [1817 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.3.2-1 [1348 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.20.2-1 [10.3 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241024 [109 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf xfonts-utils armhf 1:7.7+7 [84.2 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 78 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libaec0 armhf 1.1.3-1 [21.5 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.63.0-1 [62.9 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.4.0-1 [55.1 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.6.0-1 [118 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.6.0-1 [17.1 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.10.1-2 [308 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.10.1-2 [303 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.15-1 [70.0 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-6 [263 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.82.1-1 [1325 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 10.0.1-1 [418 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libsz2 armhf 1.1.3-1 [7724 B] Get: 112 http://deb.debian.org/debian trixie/main armhf libhdf5-103-1t64 armhf 1.10.10+repack-4 [1196 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4 [62.3 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-1 [399 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b1 [30.7 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b1 [25.5 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf liblzf1 armhf 3.6-4+b1 [9476 B] Get: 127 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.1-1+b1 [11.8 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libwebpdemux2 armhf 1.4.0-0.1 [110 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libwebpmux3 armhf 1.4.0-0.1 [120 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf python3-avro all 1.12.0+dfsg-1 [74.0 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-11 [3340 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf python3-pil armhf 10.4.0-1 [465 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf python3-cairo armhf 1.26.1-2 [108 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf python3-freetype all 2.5.1-1 [89.3 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf python3-rlpycairo all 0.3.0-3 [9904 B] Get: 141 http://deb.debian.org/debian trixie/main armhf python3-reportlab all 4.2.5-1 [1117 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf python3-biopython armhf 1.84+dfsg-3 [1618 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 145 http://deb.debian.org/debian trixie/main armhf python3-charset-normalizer armhf 3.4.0-1 [111 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf python3-roman all 4.2-1 [10.4 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf python3-execnet all 2.1.1-1 [40.2 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf python3-h5py-serial armhf 3.11.0-5 [900 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf python3-h5py all 3.11.0-5 [14.7 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf python3-idna all 3.8-2 [41.6 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian trixie/main armhf python3-iso8601 all 2.1.0-2 [12.1 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.1-1 [45.8 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf python3-urllib3 all 2.0.7-2 [111 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf python3-pbcommand all 2.1.1+git20220616.3f2e6c2-3 [90.5 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf python3-pysam armhf 0.22.1+ds-2+b1 [3274 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf python3-pbcore all 2.1.2+dfsg-8 [2831 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf python3-pytest-runner all 2.11.1-4 [8432 B] Get: 165 http://deb.debian.org/debian trixie/main armhf python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf python3-scipy armhf 1.13.1-5 [15.2 MB] Get: 167 http://deb.debian.org/debian trixie/main armhf python3-uritools all 4.0.3-1 [28.6 kB] Fetched 85.8 MB in 3s (30.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19668 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.6-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_armhf.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:armhf (3.12.6-1) ... Setting up libexpat1:armhf (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19988 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_armhf.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21060 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_armhf.deb ... Unpacking python3 (3.12.6-1) ... 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Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libgraphite2-3:armhf (1.3.14-2) ... Setting up liblcms2-2:armhf (2.16-2) ... Setting up libpixman-1-0:armhf (0.42.2-1+b1) ... Setting up libsharpyuv0:armhf (1.4.0-0.1) ... Setting up libxau6:armhf (1:1.0.9-1+b1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libxcb1:armhf (1.17.0-2) ... Setting up libicu72:armhf (72.1-5) ... Setting up liblerc4:armhf (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libxcb-render0:armhf (1.17.0-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b4) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.63.0-1) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:armhf (1.17.0-2) ... Setting up libcom-err2:armhf (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libaec0:armhf (1.1.3-1) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 27 09:26:23 UTC 2024. Universal Time is now: Sun Oct 27 09:26:23 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:armhf (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.82.1-1) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:armhf (3.6-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.15-1) ... Setting up libimagequant0:armhf (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up libgfortran5:armhf (14.2.0-6) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.4.0-1) ... Setting up libwebp7:armhf (1.4.0-0.1) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:armhf (1.4.0-0.1) ... Setting up libxext6:armhf (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:armhf (10.0.1-1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b1) ... Setting up libcurl4t64:armhf (8.10.1-2) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:armhf (8.10.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.2-2) ... Setting up libraqm0:armhf (0.10.1-1+b1) ... Setting up libnsl2:armhf (1.3.0-3+b2) ... Setting up libhts3t64:armhf (1.20+ds-1) ... Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4) ... Setting up libpython3.12-stdlib:armhf (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-pil:armhf (10.4.0-1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up python3-iso8601 (2.1.0-2) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-avro (1.12.0+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-uritools (4.0.3-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.1+ds-2+b1) ... Setting up python3-cairo (1.26.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-pytest-xdist (3.6.1-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-3) ... Setting up python3-pbcore (2.1.2+dfsg-8) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_source.changes dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pytest_cache rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt writing manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'kineticsTools.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kineticsTools.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kineticsTools.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kineticsTools.resources' to be distributed and are already explicitly excluding 'kineticsTools.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/kineticsTools arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c kineticsTools/tree_predict.c -o build/temp.linux-armv7l-cpython-312/kineticsTools/tree_predict.o -O3 -shared -std=c99 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/kineticsTools/tree_predict.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tree_predict.cpython-312-arm-linux-gnueabihf.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test I: pybuild base:311: cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build; python3.12 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build configfile: pytest.ini plugins: typeguard-4.3.0, xdist-3.6.1 created: 4/4 workers 4 workers [19 items] scheduling tests via LoadScopeScheduling test/test_loader.py::test_basic test/test_ipdModel.py::TestIpdModel::test_refLength test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig [gw0] [ 5%] PASSED test/test_loader.py::test_basic [gw2] [ 10%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_loader.py::test_path test/test_ReferenceUtils.py::TestReferenceUtils::test_bam [gw1] [ 15%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset [gw1] [ 21%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow [gw1] [ 26%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw1] [ 31%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw3] [ 36%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw3] [ 42%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_integration.py::TestKineticsTools::test_help [gw2] [ 47%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw0] [ 52%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem [gw0] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw2] [ 63%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_outputs.py::TestOutputs::test_csv_output test/test_loader.py::test_getResourcePathSpec [gw2] [ 68%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw1] [ 73%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw0] [ 78%] PASSED test/test_loader.py::test_getResourcePathSpec test/test_outputs.py::TestOutputs::test_bigwig test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw2] [ 84%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig [gw1] [ 89%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw3] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw3] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1 ../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1 ../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1 ../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1 /usr/lib/python3/dist-packages/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= 2.17s call test/test_integration.py::TestKineticsTools::test_help (19 durations < 0.005s hidden. Use -vv to show these durations.) ================== 5 passed, 14 skipped, 4 warnings in 5.96s =================== make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'kineticsTools.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kineticsTools.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kineticsTools.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kineticsTools.resources' to be distributed and are already explicitly excluding 'kineticsTools.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12 creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tree_predict.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/loader.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/.gitignore -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/README.md -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/loader.py to loader.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-312.pyc running install_egg_info Copying kineticsTools.egg-info to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin mkdir -p /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin mv debian/python3-kineticstools/usr/bin/* /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin mkdir -p /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1 rst2man doc/manual.rst > /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1 doc/manual.rst:53: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported mkdir -p debian/kineticstools-data/usr/share/kineticstools # There is probably a simpler way, but that should do for the moment. set -e \ ; for libdir in debian/python3-kineticstools/usr/lib/python3.* \ ; do rm -rf /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; mv ${libdir}/dist-packages/kineticsTools/resources /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'kineticstools' in '../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_all.deb'. dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb'. dpkg-deb: building package 'kineticstools-data' in '../kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-3_all.deb'. dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo dpkg-genchanges --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6921 and its subdirectories I: Current time: Sat Oct 26 21:31:48 -12 2024 I: pbuilder-time-stamp: 1730021508 Sun Oct 27 09:33:16 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Sun Oct 27 09:33:16 UTC 2024 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Sun Oct 27 09:39:00 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Sun Oct 27 09:39:02 UTC 2024 I: kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.changes: Format: 1.8 Date: Sun, 13 Oct 2024 17:34:50 +0200 Source: kineticstools Binary: kineticstools kineticstools-data python3-kineticstools python3-kineticstools-dbgsym Architecture: all armhf Version: 0.6.1+git20220223.1326a4d+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kineticstools - detection of DNA modifications kineticstools-data - detection of DNA modifications -- data files python3-kineticstools - detection of DNA modifications (Python 3 library) Closes: 1083454 Changes: kineticstools (0.6.1+git20220223.1326a4d+dfsg-3) unstable; urgency=medium . * Do not depends on deprecated module python3-pkg-resources Closes: #1083454 * Standards-Version: 4.7.0 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: 07a575c0f6aa39729561de6be66d3308f8877641 21693308 kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-3_all.deb cc80ec088c381c965877d4f1871f9d75aa0c9009 14616 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_all.deb 0ada59fa6d352285fb8107bd04efd85c1577ccc7 10248 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo 939ef5ecec61d6ec7d4dc34a05307347c82bc8de 6476 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb 018c826ca9d6f39e7daba29398b12bc6756d26ee 46252 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb Checksums-Sha256: 1807c61695d409e1319d84e86549e80ab9d072df0540f0aa4bfc9fa9645f801e 21693308 kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-3_all.deb 13003796ada98769690aef69634d0dde65e6d669211a0cd5aa3a1d3b806afa39 14616 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_all.deb 25a2a0cb3c199041446f91384039733619f919d1b97b6f98bb867770f8e0ea21 10248 kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo 83c3e3717bf568061b649bbd5e60e45d806db959ca88a75ab88fa09799150107 6476 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb 7c72c79f9b7172593e1a84ee464dab4186ab4a06f222470f1c691214b16534a0 46252 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb Files: 6a5cf2dd4ea90b129ecafc8cb9ba878a 21693308 science optional kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-3_all.deb 101ab5ea34916020bd1f37959710790b 14616 science optional kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_all.deb 72b5ae768710c5e858f521043d71012b 10248 science optional kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo 044ad6daf21157ed0c57c55b8d4ffebd 6476 debug optional python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb d3bf30fc38508ccc58af59d0982412bc 46252 python optional python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.deb Sun Oct 27 09:39:04 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_8-11154.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/b1/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.IHLBpm4x/b2/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.685s) 0.685s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.252s) 0.252s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.097s CPU time consumed: 1.063s Sun Oct 27 09:39:05 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 27 09:39:05 UTC 2024 I: kineticstools from trixie built successfully and reproducibly on armhf. Sun Oct 27 09:39:07 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 27 09:39:07 UTC 2024 I: Submitting 12K b1/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo.asc Sun Oct 27 09:39:08 UTC 2024 I: Submitting 12K b2/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo.asc Sun Oct 27 09:39:09 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 27 09:39:09 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 27 09:39:09 UTC 2024 I: Removing signed kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo.asc files: removed './b1/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo.asc' removed './b2/kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_armhf.buildinfo.asc'