Tue Dec 17 02:11:17 UTC 2024 I: starting to build ivar/trixie/armhf on jenkins on '2024-12-17 02:10' Tue Dec 17 02:11:17 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/7836/console.log Tue Dec 17 02:11:17 UTC 2024 I: Downloading source for trixie/ivar=1.4.3+dfsg-2 --2024-12-17 02:11:17-- http://deb.debian.org/debian/pool/main/i/ivar/ivar_1.4.3%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2205 (2.2K) [text/prs.lines.tag] Saving to: ‘ivar_1.4.3+dfsg-2.dsc’ 0K .. 100% 312M=0s 2024-12-17 02:11:17 (312 MB/s) - ‘ivar_1.4.3+dfsg-2.dsc’ saved [2205/2205] Tue Dec 17 02:11:17 UTC 2024 I: ivar_1.4.3+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.4.3+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: b3321b88507ca2939854142a4b8a211b8f718ff3 674816 ivar_1.4.3+dfsg.orig.tar.xz a0301ce9286b8b5063a5b90de79c015c4e171d51 46396 ivar_1.4.3+dfsg-2.debian.tar.xz Checksums-Sha256: 262c15f5135207598785d3eb29698d4a0534c029408c917d18efb1ebc167d41f 674816 ivar_1.4.3+dfsg.orig.tar.xz 6b534b45e30e06667f6b1922934cc6aa588535d871a20336c0e42d7868d4b718 46396 ivar_1.4.3+dfsg-2.debian.tar.xz Files: bb436c8709f7f188433296aef15b41ee 674816 ivar_1.4.3+dfsg.orig.tar.xz 388f2a5bd860349586e3513d912ac57d 46396 ivar_1.4.3+dfsg-2.debian.tar.xz Dgit: 1a804969f3ffe3f2a3f77987f498d009f8fcf8a3 debian archive/debian/1.4.3+dfsg-2 https://git.dgit.debian.org/ivar -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaToY0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrFQg//foNli4YAPSpaLzp5yRutpsW9/1sa rKCDhji+0yxMs3OdL9jLCWRK7KMCFNcRwXQp+SDAJtL0YWbXBLZPo5KmxV7AUTAX a/IgPYEZO67shNRGArIT9N2HK5qKtfbd+Un93iQTX44vIesmQEFUQ1hVzc8RYX8K 3niriU9Yv+Rnh5cFZ3B53L7Zr19bjGerLokrCZEKD5Y4ApyIa5wt848QNxSEaMvH /cbjydcrDCyhbcBJD5hdHxxABknpwJOsQc1uzoJcqmdsOkVwkahZz2ZQ/jpISsMp NN6A7HEPgmfoY01oyP4QS0OTNvgnsGCaZwpiVWkesUiaOepAuIK/jgrdly1IDiOg yF1Xfz3Ecm6EgXmBh7fWSH9IjJ9Wk9rc3HiqCrxDgFtilMSGA/RQ2WAFJoptFhmS OM557zcdNLGCb4ydlRsMT6q3nA2okK0UDxqbGH0ROwrpV8QpJjHvBKwXmPHi2wrF sTM3iET17owz83z5qX9vqx1tuJUhpdxw5Av/pYafIZDCozTid2QONmevoti6ZRFC R6o/LFoF+DPo1gZk5pD7H0ruZwCpa+pqx5ruDn96sxvXIqCI4InHKdJ7dgGjFjSE 0vFV4FVsFS5QIe4dhv9B6q/eih5NgESLKKKHpl6j9yZHFu662MKH3c9SLbTZb5wW 7g/VpG4zTUtKot8= =WWVS -----END PGP SIGNATURE----- Tue Dec 17 02:11:17 UTC 2024 I: Checking whether the package is not for us Tue Dec 17 02:11:17 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Tue Dec 17 02:11:17 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Tue Dec 17 02:22:05 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 16 14:11:29 -12 2024 I: pbuilder-time-stamp: 1734401489 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ivar_1.4.3+dfsg-2.dsc] I: copying [./ivar_1.4.3+dfsg.orig.tar.xz] I: copying [./ivar_1.4.3+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jul 14 09:59:41 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.3+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ivar in ivar-1.4.3+dfsg dpkg-source: info: unpacking ivar_1.4.3+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26339/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='3ff8c8f67cb54aa0acdbd6e775526748' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='26339' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iWxefhKg/pbuilderrc_9jZm --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iWxefhKg/b1 --logfile b1/build.log ivar_1.4.3+dfsg-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-28-armmp #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/26339/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 35.1 MB of archives. After unpacking 113 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf comerr-dev armhf 2.1-1.47.2~rc1-2 [54.9 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 24 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 35 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libgssrpc4t64 armhf 1.21.3-3 [52.5 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libkadm5clnt-mit12 armhf 1.21.3-3 [37.0 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libkdb5-10t64 armhf 1.21.3-3 [37.1 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libkadm5srv-mit12 armhf 1.21.3-3 [46.7 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf krb5-multidev armhf 1.21.3-3 [126 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libunbound8 armhf 1.22.0-1 [539 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libp11-kit-dev armhf 0.25.5-2+b1 [208 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libkrb5-dev armhf 1.21.3-3 [15.8 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libldap-dev armhf 2.5.18+dfsg-3+b1 [282 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libnghttp3-dev armhf 1.6.0-2 [81.8 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls-dev armhf 1.9.1-1 [21.3 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libngtcp2-dev armhf 1.9.1-1 [165 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.3.2-2 [2385 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-1+b1 [327 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.11.1-1 [435 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.22-1 [44.5 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.20+ds-2 [1625 kB] Fetched 35.1 MB in 3s (12.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. 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Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../15-libcom-err2_1.47.2~rc1-2_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2~rc1-2) ... Selecting previously unselected package comerr-dev:armhf. Preparing to unpack .../16-comerr-dev_2.1-1.47.2~rc1-2_armhf.deb ... Unpacking comerr-dev:armhf (2.1-1.47.2~rc1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../23-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../31-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../32-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../33-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../34-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../35-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:armhf. Preparing to unpack .../36-libgssrpc4t64_1.21.3-3_armhf.deb ... Unpacking libgssrpc4t64:armhf (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:armhf. Preparing to unpack .../37-libkadm5clnt-mit12_1.21.3-3_armhf.deb ... Unpacking libkadm5clnt-mit12:armhf (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:armhf. Preparing to unpack .../38-libkdb5-10t64_1.21.3-3_armhf.deb ... Unpacking libkdb5-10t64:armhf (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:armhf. Preparing to unpack .../39-libkadm5srv-mit12_1.21.3-3_armhf.deb ... Unpacking libkadm5srv-mit12:armhf (1.21.3-3) ... Selecting previously unselected package krb5-multidev:armhf. Preparing to unpack .../40-krb5-multidev_1.21.3-3_armhf.deb ... Unpacking krb5-multidev:armhf (1.21.3-3) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../41-libbrotli1_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libbrotli-dev:armhf. Preparing to unpack .../42-libbrotli-dev_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli-dev:armhf (1.1.0-2+b6) ... Selecting previously unselected package libbz2-dev:armhf. Preparing to unpack .../43-libbz2-dev_1.0.8-6_armhf.deb ... Unpacking libbz2-dev:armhf (1.0.8-6) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../44-libsasl2-modules-db_2.1.28+dfsg1-8_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../45-libsasl2-2_2.1.28+dfsg1-8_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../46-libldap-2.5-0_2.5.18+dfsg-3+b1_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../47-libnghttp2-14_1.64.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:armhf. Preparing to unpack .../48-libnghttp3-9_1.6.0-2_armhf.deb ... Unpacking libnghttp3-9:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:armhf. Preparing to unpack .../49-libngtcp2-16_1.9.1-1_armhf.deb ... Unpacking libngtcp2-16:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:armhf. Preparing to unpack .../50-libngtcp2-crypto-gnutls8_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../51-libpsl5t64_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../52-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../53-libssh2-1t64_1.11.1-1_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:armhf. Preparing to unpack .../54-libcurl3t64-gnutls_8.11.1-1_armhf.deb ... Unpacking libcurl3t64-gnutls:armhf (8.11.1-1) ... Selecting previously unselected package libevent-2.1-7t64:armhf. Preparing to unpack .../55-libevent-2.1-7t64_2.1.12-stable-10+b1_armhf.deb ... Unpacking libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:armhf. Preparing to unpack .../56-libunbound8_1.22.0-1_armhf.deb ... Unpacking libunbound8:armhf (1.22.0-1) ... Selecting previously unselected package libgnutls-dane0t64:armhf. Preparing to unpack .../57-libgnutls-dane0t64_3.8.8-2_armhf.deb ... Unpacking libgnutls-dane0t64:armhf (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:armhf. Preparing to unpack .../58-libgnutls-openssl27t64_3.8.8-2_armhf.deb ... Unpacking libgnutls-openssl27t64:armhf (3.8.8-2) ... Selecting previously unselected package libidn2-dev:armhf. Preparing to unpack .../59-libidn2-dev_2.3.7-2+b1_armhf.deb ... Unpacking libidn2-dev:armhf (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit-dev:armhf. Preparing to unpack .../60-libp11-kit-dev_0.25.5-2+b1_armhf.deb ... Unpacking libp11-kit-dev:armhf (0.25.5-2+b1) ... Selecting previously unselected package libtasn1-6-dev:armhf. Preparing to unpack .../61-libtasn1-6-dev_4.19.0-3+b3_armhf.deb ... Unpacking libtasn1-6-dev:armhf (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:armhf. Preparing to unpack .../62-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_armhf.deb ... Unpacking libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:armhf. Preparing to unpack .../63-libgmp-dev_2%3a6.3.0+dfsg-3_armhf.deb ... Unpacking libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Selecting previously unselected package nettle-dev:armhf. Preparing to unpack .../64-nettle-dev_3.10-1+b1_armhf.deb ... Unpacking nettle-dev:armhf (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:armhf. Preparing to unpack .../65-libgnutls28-dev_3.8.8-2_armhf.deb ... Unpacking libgnutls28-dev:armhf (3.8.8-2) ... Selecting previously unselected package libkrb5-dev:armhf. Preparing to unpack .../66-libkrb5-dev_1.21.3-3_armhf.deb ... Unpacking libkrb5-dev:armhf (1.21.3-3) ... Selecting previously unselected package libldap-dev:armhf. Preparing to unpack .../67-libldap-dev_2.5.18+dfsg-3+b1_armhf.deb ... Unpacking libldap-dev:armhf (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libpkgconf3:armhf. Preparing to unpack .../68-libpkgconf3_1.8.1-4_armhf.deb ... Unpacking libpkgconf3:armhf (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../69-pkgconf-bin_1.8.1-4_armhf.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:armhf. Preparing to unpack .../70-pkgconf_1.8.1-4_armhf.deb ... Unpacking pkgconf:armhf (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:armhf. Preparing to unpack .../71-libnghttp2-dev_1.64.0-1_armhf.deb ... Unpacking libnghttp2-dev:armhf (1.64.0-1) ... Selecting previously unselected package libnghttp3-dev:armhf. Preparing to unpack .../72-libnghttp3-dev_1.6.0-2_armhf.deb ... Unpacking libnghttp3-dev:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:armhf. Preparing to unpack .../73-libngtcp2-crypto-gnutls-dev_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls-dev:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-dev:armhf. Preparing to unpack .../74-libngtcp2-dev_1.9.1-1_armhf.deb ... Unpacking libngtcp2-dev:armhf (1.9.1-1) ... Selecting previously unselected package libpsl-dev:armhf. Preparing to unpack .../75-libpsl-dev_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl-dev:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../76-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:armhf. Preparing to unpack .../77-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:armhf. Preparing to unpack .../78-libssl-dev_3.3.2-2_armhf.deb ... Unpacking libssl-dev:armhf (3.3.2-2) ... Selecting previously unselected package libssh2-1-dev:armhf. Preparing to unpack .../79-libssh2-1-dev_1.11.1-1_armhf.deb ... Unpacking libssh2-1-dev:armhf (1.11.1-1) ... Selecting previously unselected package libzstd-dev:armhf. Preparing to unpack .../80-libzstd-dev_1.5.6+dfsg-1+b1_armhf.deb ... Unpacking libzstd-dev:armhf (1.5.6+dfsg-1+b1) ... Selecting previously unselected package libcurl4-gnutls-dev:armhf. Preparing to unpack .../81-libcurl4-gnutls-dev_8.11.1-1_armhf.deb ... Unpacking libcurl4-gnutls-dev:armhf (8.11.1-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../82-libdeflate0_1.22-1_armhf.deb ... Unpacking libdeflate0:armhf (1.22-1) ... Selecting previously unselected package libdeflate-dev:armhf. Preparing to unpack .../83-libdeflate-dev_1.22-1_armhf.deb ... Unpacking libdeflate-dev:armhf (1.22-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../84-libhtscodecs2_1.6.1-1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.1-1) ... Selecting previously unselected package libhts3t64:armhf. Preparing to unpack .../85-libhts3t64_1.20+ds-2_armhf.deb ... Unpacking libhts3t64:armhf (1.20+ds-2) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../86-liblzma-dev_5.6.3-1+b1_armhf.deb ... Unpacking liblzma-dev:armhf (5.6.3-1+b1) ... Selecting previously unselected package libhts-dev:armhf. Preparing to unpack .../87-libhts-dev_1.20+ds-2_armhf.deb ... Unpacking libhts-dev:armhf (1.20+ds-2) ... Setting up libhtscodecs2:armhf (1.6.1-1) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libgnutls-openssl27t64:armhf (3.8.8-2) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up libzstd-dev:armhf (1.5.6+dfsg-1+b1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up libcom-err2:armhf (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:armhf (1.22.0-1) ... Setting up libpkgconf3:armhf (1.8.1-4) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Setting up libgnutls-dane0t64:armhf (3.8.8-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up comerr-dev:armhf (2.1-1.47.2~rc1-2) ... Setting up libssl-dev:armhf (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libidn2-dev:armhf (2.3.7-2+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.6.0-2) ... Setting up libnghttp3-dev:armhf (1.6.0-2) ... Setting up liblzma-dev:armhf (5.6.3-1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libngtcp2-16:armhf (1.9.1-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libtasn1-6-dev:armhf (4.19.0-3+b3) ... Setting up libdeflate-dev:armhf (1.22-1) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbrotli-dev:armhf (1.1.0-2+b6) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Setting up libp11-kit-dev:armhf (0.25.5-2+b1) ... Setting up libbz2-dev:armhf (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Setting up nettle-dev:armhf (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libngtcp2-crypto-gnutls-dev:armhf (1.9.1-1) ... Setting up libngtcp2-dev:armhf (1.9.1-1) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:armhf (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libgnutls28-dev:armhf (3.8.8-2) ... Setting up libnghttp2-dev:armhf (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:armhf (8.11.1-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:armhf (1.21.3-3) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:armhf (1.20+ds-2) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-3) ... Setting up libkdb5-10t64:armhf (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:armhf (1.21.3-3) ... Setting up krb5-multidev:armhf (1.21.3-3) ... Setting up libkrb5-dev:armhf (1.21.3-3) ... Setting up libcurl4-gnutls-dev:armhf (8.11.1-1) ... Setting up libhts-dev:armhf (1.20+ds-2) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ivar-1.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.3+dfsg-2_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp Using built-in specs. Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Using built-in specs. Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BIT--enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-S=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BIT /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccoWEXQr.s S=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1pluslinux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd -quiet -v -I . -Igcc version 14.2.0 (Debian 14.2.0-8) .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCECOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccdcwnun.s -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccddvSdX.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: Compiler executable checksum: 224ba498a73718fa9108525d62491177 224ba498a73718fa9108525d62491177 Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o alignment.o /tmp/ccoWEXQr.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'alignment.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccclDEXU.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o ivar.o /tmp/ccddvSdX.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ivar.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccJ76ZTo.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o call_consensus_pileup.o /tmp/ccdcwnun.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'call_consensus_pileup.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/cc7TZvv7.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o suffix_tree.o /tmp/ccclDEXU.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' 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'-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'remove_reads_from_amplicon.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/cceowdQ9.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'suffix_tree.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccTQhlIi.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o trim_primer_quality.o /tmp/ccJ76ZTo.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'trim_primer_quality.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccWGociV.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o call_variants.o /tmp/cceowdQ9.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'call_variants.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/cc5tGzzt.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' 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'-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'primer_bed.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/cccrdqmH.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o allele_functions.o /tmp/ccWGociV.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'allele_functions.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccPfzguH.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o get_masked_amplicons.o /tmp/cc5tGzzt.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'get_masked_amplicons.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/ccidy5U2.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o get_common_variants.o /tmp/cccrdqmH.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'get_common_variants.' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc/arm-linux-gnueabihf/14/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _LARGEFILE_SOURCE -D _FILE_OFFSET_BITS=64 -D _TIME_BITS=64 -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -o /tmp/cc1XdwN4.s GNU C++17 (Debian 14.2.0-8) version 14.2.0 (arm-linux-gnueabihf) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/14" ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/14/../../../../arm-linux-gnueabihf/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/arm-linux-gnueabihf/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/arm-linux-gnueabihf/14/include /usr/local/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 224ba498a73718fa9108525d62491177 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o interval_tree.o /tmp/cc1XdwN4.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'interval_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o ref_seq.o /tmp/ccidy5U2.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o parse_gff.o /tmp/ccPfzguH.s GNU assembler version 2.43.50 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.43.50.20241210 MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-D' '_LARGEFILE_SOURCE' '-D' '_FILE_OFFSET_BITS=64' '-D' '_TIME_BITS=64' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'parse_gff.' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/arm-linux-gnueabihf/14/lto-wrapper Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-8' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-8) MAKEFLAGS=w -j3 COMPILER_PATH=/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/14/:/usr/libexec/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/ LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/14/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/14/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ivar.' /usr/libexec/gcc/arm-linux-gnueabihf/14/collect2 -plugin /usr/libexec/gcc/arm-linux-gnueabihf/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/arm-linux-gnueabihf/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccrIunp7.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -dynamic-linker /lib/ld-linux-armhf.so.3 -X --hash-style=gnu --as-needed -m armelf_linux_eabi -pie -o ivar /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/Scrt1.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' Making all in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' dh_auto_test --no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' Making check in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' Making check in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants make[4]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim.o test_primer_trim.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/primer_bed.o ../src/primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim test_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/allele_functions.o ../src/allele_functions.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_allele_depth.o test_allele_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_threshold.o test_consensus_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_variants.o ../src/call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_unpaired_trim.o test_unpaired_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_amplicon_search.o test_amplicon_search.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_insert_threshold.o test_consensus_min_insert_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_insert_threshold test_consensus_min_insert_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim_unpaired.o test_quality_trim_unpaired.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim_unpaired test_quality_trim_unpaired.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants_reverse_strand.o test_variants_reverse_strand.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_strand_variants test_variants_reverse_strand.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make check-TESTS make[4]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[5]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants FAIL: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search PASS: check_consensus_min_insert_threshold PASS: check_quality_trim_unpaired PASS: check_strand_variants ====================================== ivar 1.4.3: tests/test-suite.log ====================================== # TOTAL: 21 # PASS: 20 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: check_unpaired_trim ========================= Found 8 primers in BED file test_72_280_12:1:0_11:0:0_2 Forward Reverse Condensing cigar ... test_92_337_8:0:0_10:0:0_21 Forward Reverse Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 56 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 56 Got 1 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 6 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 3 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 3 Got 99 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 99 Got 2 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 2 Got 65 Condensing cigar ... Cigar length didn't match after condense! Expected 19 Got 75 Cigar length didn't match after condense! Expected 56 Got 6 Cigar length didn't match after condense! Expected 1 Got 3 Cigar length didn't match after condense! Expected 6 Got 99 Cigar length didn't match after condense! Expected 3 Got 2 Cigar length didn't match after condense! Expected 99 Got 65 test_147_337_11:1:0_11:1:0_11 Forward Reverse Condensing cigar ... test_149_298_7:0:0_11:0:0_d Forward Reverse Condensing cigar ... test_184_379_11:1:0_8:1:0_26 Forward Reverse Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 6 Got 0 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 2 Got 89 Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 0 Got 4 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 89 Got 18 Condensing cigar ... Cigar length didn't match after condense! Expected 71 Got 160 Cigar flag didn't match! Expected  Got 4 Cigar length didn't match after condense! Expected 2 Got 18 FAIL check_unpaired_trim (exit status: 255) ============================================================================ Testsuite summary for ivar 1.4.3 ============================================================================ # TOTAL: 21 # PASS: 20 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log Please report to gkarthik@scripps.edu ============================================================================ make[5]: *** [Makefile:968: test-suite.log] Error 1 make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[4]: *** [Makefile:1076: check-TESTS] Error 2 make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: *** [Makefile:1289: check-am] Error 2 make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[2]: *** [Makefile:371: check-recursive] Error 1 make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_test] Error 25 make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make: *** [debian/rules:12: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26339 and its subdirectories Tue Dec 17 02:22:08 UTC 2024 W: No second build log, what happened?