Sat Dec 14 01:24:03 UTC 2024 I: starting to build htseq/trixie/armhf on jenkins on '2024-12-14 01:23' Sat Dec 14 01:24:03 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_1/7969/console.log Sat Dec 14 01:24:03 UTC 2024 I: Downloading source for trixie/htseq=2.0.9+dfsg-1 --2024-12-14 01:24:03-- http://deb.debian.org/debian/pool/main/h/htseq/htseq_2.0.9%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2193 (2.1K) [text/prs.lines.tag] Saving to: ‘htseq_2.0.9+dfsg-1.dsc’ 0K .. 100% 317M=0s 2024-12-14 01:24:03 (317 MB/s) - ‘htseq_2.0.9+dfsg-1.dsc’ saved [2193/2193] Sat Dec 14 01:24:03 UTC 2024 I: htseq_2.0.9+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: htseq Binary: python3-htseq Architecture: any Version: 2.0.9+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Diane Trout , Andreas Tille Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/htseq Vcs-Git: https://salsa.debian.org/med-team/htseq.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 Package-List: python3-htseq deb python optional arch=any Checksums-Sha1: 972a99fca7a875871e6885076bbef8ded6ecbbfe 43586124 htseq_2.0.9+dfsg.orig.tar.xz 508350c4d0fdbf73d6967587a06c39ed8e4c6080 11772 htseq_2.0.9+dfsg-1.debian.tar.xz Checksums-Sha256: 135a8df05e04b6fd79801b2961eedd9df37501b31fcb4612b6def71a990b9a23 43586124 htseq_2.0.9+dfsg.orig.tar.xz 462a4669c448bb9b50d23d5048e5d810f83919096bdfaae84a7fca4bfc0bfc7e 11772 htseq_2.0.9+dfsg-1.debian.tar.xz Files: a7614612d0f3df5bf4ee5f19f83d9eb9 43586124 htseq_2.0.9+dfsg.orig.tar.xz 164aaefc888581f28b8bfc863f7ba642 11772 htseq_2.0.9+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdUhLkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEiUw//VxMr0EFVGu5Zy6SbM5cbOvB6mHYFzphr u1fdTey+YNJLBs8KNr0IQYi/crjYfV8N/xxR9GIPtu/z74WzQvtbvUFgNuNdwVLn XjHAEyd+PFSd2UMSP89m2SzV2J9OXSWQnYPOd2wvBQzcWQkvYoCD1GUlAmr6gwwF /WRj8uvFziVH8tQWhG9u5sgJu6kKvfiT3VnOEZ0VGHGxfvv99qc393bVf0K5KGNR dyNRYJZr10z80M7+Wldf8OD+o/cNcKBMJlRrOld7aQk37DMh/U1lQgSbBBSwIvb1 fgyilctR3mHvXi0WurYrhhNpt776z3ROJ2+4rFGi8PR5r8eQaamEjuSDMUPzJED1 jxl3mipa5POZe/xDUuf6efSVB/cB614Z/dAqlpCdFcoGtNolZAUGZoYPSNQPvTmv AmGJL3nw3thWQLmK4spz6uLfXtLlw+Q7VDbhGEGNWyBVIP9VnpttnkSfK1vq/mwN jkUbeTuzJngN2TWTIvedyBCE747qRsvDC1nX2FmmdaM7ze43L1EohvxgkkXu1S77 2jvjOvcEBL3saW9pUIgn2e7MCzxE5vN7S5ZkdwbCNNt7mQXnGxSiE26JiMA/dW4k 3HZX1EaO1JaYEg0dRRoCqvjffqSOcaUzU4KiVvl6RnyjK2TWiYjQ+0p3g6AmNz/R /wx5laKAOFw= =Y63v -----END PGP SIGNATURE----- Sat Dec 14 01:24:03 UTC 2024 I: Checking whether the package is not for us Sat Dec 14 01:24:03 UTC 2024 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Sat Dec 14 01:24:03 UTC 2024 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Sat Dec 14 02:02:02 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 13 13:24:17 -12 2024 I: pbuilder-time-stamp: 1734139457 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [htseq_2.0.9+dfsg-1.dsc] I: copying [./htseq_2.0.9+dfsg.orig.tar.xz] I: copying [./htseq_2.0.9+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 7 17:24:09 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htseq_2.0.9+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting htseq in htseq-2.0.9+dfsg dpkg-source: info: unpacking htseq_2.0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking htseq_2.0.9+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12495/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='196a4761f4b2454697ebfd9e15199c0d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12495' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/pbuilderrc_UVKE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/b1 --logfile b1/build.log htseq_2.0.9+dfsg-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12495/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-debian; however: Package python3-debian is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-debian{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pysam{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-apt python3-bs4 python3-cssselect python3-html5lib python3-olefile shared-mime-info wget xdg-user-dirs zstd 0 packages upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After unpacking 447 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.8-1 [801 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.8-1 [1810 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.8-1 [1823 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.8-1 [677 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-6 [1091 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-12 [83.9 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [934 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b2 [25.0 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libxft2 armhf 2.3.6-1+b2 [46.5 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libxss1 armhf 1:1.2.3-1+b2 [16.4 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libtk8.6 armhf 8.6.15-1 [697 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7 [481 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf blt armhf 2.5.3+dfsg-7 [6024 B] Get: 59 http://deb.debian.org/debian trixie/main armhf cython3 armhf 3.0.11+dfsg-1+b1 [2812 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 66 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 80 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 75.2.0-1 [213 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241024 [109 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf fonts-lyx all 2.4.2.1-1 [190 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.0-1 [310 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.4-1 [140 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.82.3-2 [1327 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 10.1.0-1 [418 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b2 [25.6 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b4 [179 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.8-1 [1849 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.8-1 [3829 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.12.6-1 [9952 B] Get: 124 http://deb.debian.org/debian trixie/main armhf libpython3-all-dev armhf 3.12.6-1 [1064 B] Get: 125 http://deb.debian.org/debian trixie/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1+b1 [111 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1+b1 [266 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libwebpdemux2 armhf 1.4.0-0.1+b1 [110 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libwebpmux3 armhf 1.4.0-0.1+b1 [120 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.6-1 [1040 B] Get: 135 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.8-1 [505 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.12.6-1 [26.1 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.12.6-1 [1068 B] Get: 138 http://deb.debian.org/debian trixie/main armhf python3-appdirs all 1.4.4-4 [12.5 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf python3-attr all 23.2.0-2 [65.5 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf python3-brotli armhf 1.1.0-2+b6 [302 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-12 [3676 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf python3-contourpy armhf 1.3.1-1 [217 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 145 http://deb.debian.org/debian trixie/main armhf python3-dateutil all 2.9.0-3 [79.3 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf python3-debian all 0.1.49 [115 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf python3-fs all 2.4.16-5 [95.1 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf python3-lxml armhf 5.3.0-1+b1 [1468 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf python3-lz4 armhf 4.4.0+dfsg-1 [23.9 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf python3-scipy armhf 1.13.1-6 [17.6 MB] Get: 153 http://deb.debian.org/debian trixie/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf python3-sympy all 1.13.3-1 [4147 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf python3-fonttools armhf 4.55.0-3 [1529 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf python3-kiwisolver armhf 1.4.7-2+b1 [64.9 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf python3-pil armhf 10.4.0-1+b1 [478 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf python3.12-tk armhf 3.12.8-1 [109 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf python3.13-tk armhf 3.13.1-1 [99.7 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf python3-tk armhf 3.12.7-1 [9444 B] Get: 163 http://deb.debian.org/debian trixie/main armhf python3-pil.imagetk armhf 10.4.0-1+b1 [79.3 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf python3-matplotlib armhf 3.8.3-3+b1 [5579 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf python3-pysam armhf 0.22.1+ds-2+b2 [3755 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf swig armhf 4.2.1-1 [1375 kB] Fetched 105 MB in 16s (6512 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.8-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-1_armhf.deb ... Unpacking python3.12-minimal (3.12.8-1) ... Setting up libpython3.12-minimal:armhf (3.12.8-1) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_armhf.deb ... Unpacking libcom-err2:armhf (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.8-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-1_armhf.deb ... Unpacking python3.12 (3.12.8-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21063 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_armhf.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../006-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-6_armhf.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40.2-12_armhf.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../009-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../016-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../017-libbrotli1_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../018-libpng16-16t64_1.6.44-2_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.44-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../019-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 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Unpacking swig (4.2.1-1) ... Setting up libhtscodecs2:armhf (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libgraphite2-3:armhf (1.3.14-2+b1) ... Setting up liblcms2-2:armhf (2.16-2) ... Setting up libsharpyuv0:armhf (1.4.0-0.1+b1) ... Setting up libxau6:armhf (1:1.0.11-1) ... Setting up libxdmcp6:armhf (1:1.1.5-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libxcb1:armhf (1.17.0-2+b1) ... Setting up swig (4.2.1-1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up liblerc4:armhf (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/htseq-2.0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htseq_2.0.9+dfsg-1_source.changes dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 2.0.9+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/htseq-2.0.9+dfsg' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/build/reproducible-path/htseq-2.0.9+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_py running preprocess Cython version 3.0.11 Deprecated command line option: -py3. Ignored, this option is no longer supported. creating /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts copying HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/features.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq creating /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features running build_ext building 'HTSeq._HTSeq' extension creating build/temp.linux-armv7l-cpython-312/src arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-armv7l-cpython-312/src/_HTSeq.o -w arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/_HTSeq.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-arm-linux-gnueabihf.so building 'HTSeq._StepVector' extension arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-armv7l-cpython-312/src/StepVector_wrap.o -w arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/StepVector_wrap.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/htseq-qa -> build/scripts-3.12 copying and adjusting scripts/htseq-count -> build/scripts-3.12 copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.12 changing mode of build/scripts-3.12/htseq-qa from 644 to 755 changing mode of build/scripts-3.12/htseq-count from 644 to 755 changing mode of build/scripts-3.12/htseq-count-barcodes from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-htseq/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq /bin/sh: 1: git: not found /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running preprocess Cython version 3.0.11 Deprecated command line option: -py3. Ignored, this option is no longer supported. copying HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq copying HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/_HTSeq.c -o build/temp.linux-armv7l-cpython-312/src/_HTSeq.o -w arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/_HTSeq.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-arm-linux-gnueabihf.so building 'HTSeq._StepVector' extension arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/StepVector_wrap.cxx -o build/temp.linux-armv7l-cpython-312/src/StepVector_wrap.o -w arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/htseq-2.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/StepVector_wrap.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-arm-linux-gnueabihf.so running build_scripts running install_lib creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_StepVector.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/features.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StepVector.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/StretchVector.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq_internal.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/StepVector.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/features.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/__init__.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/utils.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_version.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/__init__.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/__init__.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/utils.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/scripts/qa.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/StretchVector.py -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq copying /build/reproducible-path/htseq-2.0.9+dfsg/.pybuild/cpython3_3.12_htseq/build/HTSeq/_HTSeq.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StepVector.py to StepVector.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/features.py to features.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count.py to count.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/scripts/qa.py to qa.cpython-312.pyc byte-compiling /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-312.pyc running install_egg_info running egg_info creating HTSeq.egg-info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt writing manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'todo.txt' adding license file 'LICENSE' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/lib/python3.12/dist-packages/HTSeq-2.0.9.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-qa -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-count-barcodes -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin copying build/scripts-3.12/htseq-count -> /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin changing mode of /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin/htseq-qa to 755 changing mode of /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755 changing mode of /build/reproducible-path/htseq-2.0.9+dfsg/debian/python3-htseq/usr/bin/htseq-count to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/htseq-2.0.9+dfsg' dh_python3 dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/htseq-2.0.9+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-312-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 492895 new size 495170 dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-312-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 1093855 new size 1095895 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-htseq' in '../python3-htseq_2.0.9+dfsg-1_armhf.deb'. dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_2.0.9+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../htseq_2.0.9+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../htseq_2.0.9+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12495 and its subdirectories I: Current time: Fri Dec 13 14:00:38 -12 2024 I: pbuilder-time-stamp: 1734141638 Sat Dec 14 02:02:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Sat Dec 14 02:02:04 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Sat Dec 14 02:09:43 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Sat Dec 14 02:09:46 UTC 2024 I: htseq_2.0.9+dfsg-1_armhf.changes: Format: 1.8 Date: Sat, 07 Dec 2024 17:53:44 +0100 Source: htseq Binary: python3-htseq python3-htseq-dbgsym Architecture: armhf Version: 2.0.9+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-htseq - Python3 high-throughput genome sequencing read analysis utilities Closes: 1085638 Changes: htseq (2.0.9+dfsg-1) unstable; urgency=medium . * New upstream version * Fix watch file * Fix Python3.12 string syntax Closes: #1085638 * Exclude files via Files-Excluded instead of gbp.conf filter * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 491e4c8f2e54e0c071ec16daab95a4b8256cb593 9562 htseq_2.0.9+dfsg-1_armhf.buildinfo fa9e1178ae66a4ee8c59643ee94934bf34288fde 1670500 python3-htseq-dbgsym_2.0.9+dfsg-1_armhf.deb 4aa0274cac7659acd1a78c03cc64f404fbd582b5 285992 python3-htseq_2.0.9+dfsg-1_armhf.deb Checksums-Sha256: a367caf6842ccd0f2a0397904c0ee0819227a0db68a42496423848de809a73df 9562 htseq_2.0.9+dfsg-1_armhf.buildinfo 6c288afcd9e32d5a3ea10ed14a7af1b3b5effe5424286971d0234bcc86d6fdf7 1670500 python3-htseq-dbgsym_2.0.9+dfsg-1_armhf.deb b69d355254d461e34fa5a9b51d0e24d9bed9545d6f048627e864959e2c9b61db 285992 python3-htseq_2.0.9+dfsg-1_armhf.deb Files: 5dee18e8e1c5cd4e2907f6608bd1c123 9562 python optional htseq_2.0.9+dfsg-1_armhf.buildinfo bad69937710016225291ba3c3c2a2c7f 1670500 debug optional python3-htseq-dbgsym_2.0.9+dfsg-1_armhf.deb 219e79ddf15606f68d63a2a3f02aaf66 285992 python optional python3-htseq_2.0.9+dfsg-1_armhf.deb Sat Dec 14 02:09:47 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_1-7969.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/htseq_2.0.9+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/htseq_2.0.9+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/htseq_2.0.9+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/b1/htseq_2.0.9+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.4aVDBHsT/b2/htseq_2.0.9+dfsg-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.351s) 0.351s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 644ms CPU time consumed: 643ms Sat Dec 14 02:09:48 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sat Dec 14 02:09:48 UTC 2024 I: htseq from trixie built successfully and reproducibly on armhf. Sat Dec 14 02:09:49 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Dec 14 02:09:49 UTC 2024 I: Submitting 12K b1/htseq_2.0.9+dfsg-1_armhf.buildinfo.asc Sat Dec 14 02:09:50 UTC 2024 I: Submitting 12K b2/htseq_2.0.9+dfsg-1_armhf.buildinfo.asc Sat Dec 14 02:09:51 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Dec 14 02:09:51 UTC 2024 I: Done submitting .buildinfo files. Sat Dec 14 02:09:51 UTC 2024 I: Removing signed htseq_2.0.9+dfsg-1_armhf.buildinfo.asc files: removed './b1/htseq_2.0.9+dfsg-1_armhf.buildinfo.asc' removed './b2/htseq_2.0.9+dfsg-1_armhf.buildinfo.asc'