Wed May 8 00:52:47 UTC 2024 I: starting to build harvest-tools/trixie/armhf on jenkins on '2024-05-08 00:52' Wed May 8 00:52:47 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_33/14479/console.log Wed May 8 00:52:47 UTC 2024 I: Downloading source for trixie/harvest-tools=1.3-8 --2024-05-08 00:52:47-- http://deb.debian.org/debian/pool/main/h/harvest-tools/harvest-tools_1.3-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2139 (2.1K) [text/prs.lines.tag] Saving to: ‘harvest-tools_1.3-8.dsc’ 0K .. 100% 309M=0s 2024-05-08 00:52:47 (309 MB/s) - ‘harvest-tools_1.3-8.dsc’ saved [2139/2139] Wed May 8 00:52:47 UTC 2024 I: harvest-tools_1.3-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: harvest-tools Binary: harvest-tools Architecture: any Version: 1.3-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://harvest.readthedocs.org/en/latest/content/harvest-tools.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/harvest-tools Vcs-Git: https://salsa.debian.org/med-team/harvest-tools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cython3, python3-setuptools, protobuf-compiler, capnproto, libprotobuf-dev, libcapnp-dev, zlib1g-dev Package-List: harvest-tools deb science optional arch=any Checksums-Sha1: 9844afb4bd74918bd1fac45f758bc40e46776d0d 3751637 harvest-tools_1.3.orig.tar.gz b508c70fd7fa5748d9257a0fa0e58aee6349be8e 7176 harvest-tools_1.3-8.debian.tar.xz Checksums-Sha256: ffbcf0a115c74507695fd6cee4a9d5ba27a700db36b32d226521ef8dd3309264 3751637 harvest-tools_1.3.orig.tar.gz ed100cba93ed91bda4405ce1a8dbc7a529131d4c1c38e66f303190c4d6dee8d9 7176 harvest-tools_1.3-8.debian.tar.xz Files: bd7f862a086e4a44987921f113a5760e 3751637 harvest-tools_1.3.orig.tar.gz eaaf4df74be0e7b75bfb15fffb0e2419 7176 harvest-tools_1.3-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLeZzMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEG9Q/7B6csTgqYmpri175byNYvGbUkIdwqEju6 kf/Uizvsdo2CT5i0/MvgU3NgQO40qQPDmSs8oVC+/1hGt4W9v8xyjetfJzo22YL+ VSh4sBAsIUKQJ6bjTSrBXd7UMcHi925/EKcymTO20sCO2ZM3Ft5FOKPbhGp/fcE+ 7ovMl6rb7HQSoN//J+hujg/CIRyUBKPwiPkWL0FTjzsiLkI/kZ0IAlbVmVgHDyGq mSakATCkxP8IOCQx3Tx1PL+Fdlu33abZubqby7zgFfhh6HlAstA9kFdIy5P4wfBG Mw9ChGs9DAB9JLry0zPF1xvWbKaYhErk/ZoBjAmis9NAPMy4NxToNy1TwDBAPCOI DKOYF+ogvBcqVoxd2o4ZLMnageCjQL09DEwDxxTLpit0pyxIvgyV83itAPdXMtIH f3FTUYLmSN2lEPP/xQ5i4AVKh89S6PCcgG2vsPWUta+l8Ow2hev34stn/pSLxREp J6Ds/PIhhGVSPJPZni519GCdBG3Izo/TGCzQIBZKgWfNyd8zfZCSrMVkCvTZE2oU 1k39/OMHjSxJEZjW584iXqyKmWd3FtcTDsf7F4oz440lzxbS5TAKbgTHPj3zrcdC q1ALPMa/uU/BhQtrTte8M08E0DHQRr22BStKr7RYIWNUamq/FD0wdHApy4TrmgXh /XAiYrhG14I= =sDDZ -----END PGP SIGNATURE----- Wed May 8 00:52:47 UTC 2024 I: Checking whether the package is not for us Wed May 8 00:52:47 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Wed May 8 00:52:47 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Wed May 8 00:55:00 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 7 12:52:54 -12 2024 I: pbuilder-time-stamp: 1715129574 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [harvest-tools_1.3-8.dsc] I: copying [./harvest-tools_1.3.orig.tar.gz] I: copying [./harvest-tools_1.3-8.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jul 25 09:49:39 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./harvest-tools_1.3-8.dsc: no acceptable signature found dpkg-source: info: extracting harvest-tools in harvest-tools-1.3 dpkg-source: info: unpacking harvest-tools_1.3.orig.tar.gz dpkg-source: info: unpacking harvest-tools_1.3-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_readme_in_setup.patch dpkg-source: info: applying dynamic_linking.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying remove_memwrap.patch dpkg-source: info: applying parallel.patch dpkg-source: info: applying use-c++-14.patch dpkg-source: info: applying python-2to3.patch dpkg-source: info: applying protobuf-3.20.1.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7899/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='f99d0f3aa1434fdda992b282cdc97956' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7899' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/pbuilderrc_m97L --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/b1 --logfile b1/build.log harvest-tools_1.3-8.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7899/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3, python3-setuptools, protobuf-compiler, capnproto, libprotobuf-dev, libcapnp-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on capnproto; however: Package capnproto is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on libcapnp-dev; however: Package libcapnp-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} capnproto{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcapnp-1.0.1{a} libcapnp-dev{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libprotobuf-dev{a} libprotobuf-lite32t64{a} libprotobuf32t64{a} libprotoc32t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} protobuf-compiler{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-dev wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 37.8 MB of archives. After unpacking 148 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libcapnp-1.0.1 armhf 1.0.1-4 [1284 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf capnproto armhf 1.0.1-4 [225 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf cython3 armhf 3.0.10+dfsg-5 [3208 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libssl-dev armhf 3.2.1-3 [2348 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libcapnp-dev armhf 1.0.1-4 [1932 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libprotobuf32t64 armhf 3.21.12-8.2 [864 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libprotobuf-lite32t64 armhf 3.21.12-8.2 [253 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libprotobuf-dev armhf 3.21.12-8.2 [1281 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libprotoc32t64 armhf 3.21.12-8.2 [791 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf protobuf-compiler armhf 3.21.12-8.2 [84.2 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.12.3-1 [131 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Fetched 37.8 MB in 1s (61.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19760 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../5-libreadline8t64_8.2-4_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... 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Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed May 8 00:53:32 UTC 2024. Universal Time is now: Wed May 8 00:53:32 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up capnproto (1.0.1-4) ... Setting up autotools-dev (20220109.1) ... Setting up libssl-dev:armhf (3.2.1-3) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libprotoc32t64:armhf (3.21.12-8.2) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up libcapnp-dev:armhf (1.0.1-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/harvest-tools-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../harvest-tools_1.3-8_source.changes dpkg-buildpackage: info: source package harvest-tools dpkg-buildpackage: info: source version 1.3-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' if [ -f Makefile ] ; then make clean ; fi make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:58: warning: AC_OUTPUT should be used without arguments. configure.ac:58: You should run autoupdate. debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' dh_auto_configure -- --with-protobuf=/usr --with-capnp=/usr ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-protobuf=/usr --with-capnp=/usr checking for protoc... yes checking for capnp... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for google/protobuf/stubs/common.h... yes checking for capnp/common.h... yes checking for zlib.h... yes configure: creating ./config.status config.status: creating Makefile make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' cd src; /usr/bin/protoc --cpp_out . harvest/pb/harvest.proto cd src/harvest/capnp;export PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ harvest.capnp [libprotobuf WARNING google/protobuf/compiler/parser.cc:646] No syntax specified for the proto file: harvest/pb/harvest.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/capnp/harvest.capnp.o src/harvest/capnp/harvest.capnp.c++ g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/AnnotationList.o src/harvest/AnnotationList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/harvest.o src/harvest/harvest.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/HarvestIO.o src/harvest/HarvestIO.cpp src/harvest/HarvestIO.cpp: In member function 'bool HarvestIO::loadHarvestCapnp(const char*)': src/harvest/HarvestIO.cpp:119:21: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | read(fd, buffer, capnpHeaderLength); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/harvest/HarvestIO.cpp:139:30: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | write(fds[1], buffer, bytesRead); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/harvest/HarvestIO.cpp: In member function 'void HarvestIO::writeHarvest(const char*)': src/harvest/HarvestIO.cpp:325:22: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 325 | write(fd, capnpHeader, capnpHeaderLength); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/LcbList.o src/harvest/LcbList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/parse.o src/harvest/parse.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/PhylogenyTree.o src/harvest/PhylogenyTree.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/PhylogenyTreeNode.o src/harvest/PhylogenyTreeNode.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/ReferenceList.o src/harvest/ReferenceList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/TrackList.o src/harvest/TrackList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/VariantList.o src/harvest/VariantList.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o src/harvest/pb/harvest.pb.o src/harvest/pb/harvest.pb.cc In file included from /usr/include/c++/13/vector:72, from src/harvest/VariantList.h:10, from src/harvest/VariantList.cpp:7: /usr/include/c++/13/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = VariantList::Variant; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 181 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /usr/include/google/protobuf/stubs/common.h:40, from /usr/include/google/protobuf/io/coded_stream.h:131, from src/harvest/pb/harvest.pb.h:23, from src/harvest/VariantList.h:12: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long int>; _KeyOfValue = std::_Select1st, long long int> >; _Compare = std::less >; _Alloc = std::allocator, long long int> >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long long int>, std::_Select1st, long long int> >, std::less >, std::allocator, long long int> > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /usr/include/google/protobuf/stubs/common.h:38: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = VariantList::Variant; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const VariantList::Variant&, const VariantList::Variant&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'void VariantList::sortVariants()' at src/harvest/VariantList.cpp:890:6: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const VariantList::Variant&, const VariantList::Variant&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'void VariantList::sortVariants()' at src/harvest/VariantList.cpp:890:6: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long int; _Compare = std::less >; _Alloc = std::allocator, long long int> >]', inlined from 'void VariantList::initFromVcf(const char*, const ReferenceList&, TrackList*, LcbList*, PhylogenyTree*)' at src/harvest/VariantList.cpp:490:30: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long long int>, std::_Select1st, long long int> >, std::less >, std::allocator, long long int> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long long int; _Compare = std::less >; _Alloc = std::allocator, long long int> >]', inlined from 'void VariantList::initFromVcf(const char*, const ReferenceList&, TrackList*, LcbList*, PhylogenyTree*)' at src/harvest/VariantList.cpp:572:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long long int>, std::_Select1st, long long int> >, std::less >, std::allocator, long long int> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = VariantList::Variant; _Alloc = std::allocator]', inlined from 'void VariantList::initFromVcf(const char*, const ReferenceList&, TrackList*, LcbList*, PhylogenyTree*)' at src/harvest/VariantList.cpp:664:22: /usr/include/c++/13/bits/stl_vector.h:1535:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1535 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = VariantList::Variant; _Alloc = std::allocator]', inlined from 'void VariantList::initFromVcf(const char*, const ReferenceList&, TrackList*, LcbList*, PhylogenyTree*)' at src/harvest/VariantList.cpp:689:22: /usr/include/c++/13/bits/stl_vector.h:1535:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1535 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = VariantList::Variant; _Alloc = std::allocator]', inlined from 'void VariantList::initFromVcf(const char*, const ReferenceList&, TrackList*, LcbList*, PhylogenyTree*)' at src/harvest/VariantList.cpp:698:22: /usr/include/c++/13/bits/stl_vector.h:1535:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1535 | { return _M_erase(begin() + (__position - cbegin())); } | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/harvest-tools-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -Isrc -I/usr/include -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -o harvesttools src/harvest/AnnotationList.o src/harvest/harvest.o src/harvest/HarvestIO.o src/harvest/LcbList.o src/harvest/parse.o src/harvest/PhylogenyTree.o src/harvest/PhylogenyTreeNode.o src/harvest/ReferenceList.o src/harvest/TrackList.o src/harvest/VariantList.o src/harvest/pb/harvest.pb.o src/harvest/capnp/harvest.capnp.o -lprotobuf -lcapnp -lkj -lstdc++ -lz -lm -lpthread -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/harvest-tools-1.3' echo "do nothing since upstream is just symlinking against build tree" do nothing since upstream is just symlinking against build tree make[1]: Leaving directory '/build/reproducible-path/harvest-tools-1.3' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/harvest-tools/usr/bin/harvesttools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'harvest-tools' in '../harvest-tools_1.3-8_armhf.deb'. dpkg-deb: building package 'harvest-tools-dbgsym' in '../harvest-tools-dbgsym_1.3-8_armhf.deb'. dpkg-genbuildinfo --build=binary -O../harvest-tools_1.3-8_armhf.buildinfo dpkg-genchanges --build=binary -O../harvest-tools_1.3-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7899 and its subdirectories I: Current time: Tue May 7 12:54:45 -12 2024 I: pbuilder-time-stamp: 1715129685 Wed May 8 00:55:03 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net. Wed May 8 00:55:03 UTC 2024 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net. Wed May 8 01:00:39 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. Wed May 8 01:00:41 UTC 2024 I: harvest-tools_1.3-8_armhf.changes: Format: 1.8 Date: Mon, 25 Jul 2022 11:27:58 +0200 Source: harvest-tools Binary: harvest-tools harvest-tools-dbgsym Architecture: armhf Version: 1.3-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: harvest-tools - archiving and postprocessing for reference-compressed genomic mul Closes: 1012573 Changes: harvest-tools (1.3-8) unstable; urgency=medium . [ László Böszörményi ] * Build with protobuf 3.20.1+ Closes: #1012573 . [ Andreas Tille ] * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 2abaa028bc3f89615650d0e48eb1f3200f8b9d47 2316696 harvest-tools-dbgsym_1.3-8_armhf.deb f2b93ea31ed5751e2ea8c5276feae45add0d7f1b 5922 harvest-tools_1.3-8_armhf.buildinfo 1cd61246909c12bbd52df3c4b5005948a186ee70 121080 harvest-tools_1.3-8_armhf.deb Checksums-Sha256: 1d7755262fca4f37f55c08de94a9319413f414fbd6facc7d408f0916c8ace00e 2316696 harvest-tools-dbgsym_1.3-8_armhf.deb ec2b436088e7126ad24fd57a70ff41e84e0b940388123b1d09504bb1eed25015 5922 harvest-tools_1.3-8_armhf.buildinfo bb67588b3ab5b66ae97f50a002325f3ab0534c8f6fd948fd47aa3029a20ca469 121080 harvest-tools_1.3-8_armhf.deb Files: a0231419bd15c6c3aa9f6372b6b09ab6 2316696 debug optional harvest-tools-dbgsym_1.3-8_armhf.deb d64c3e9101949564969a0c99433d381f 5922 science optional harvest-tools_1.3-8_armhf.buildinfo 6516ac4b2ef3c0dab5d504f6c217cc86 121080 science optional harvest-tools_1.3-8_armhf.deb Wed May 8 01:00:43 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_33-14479.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/harvest-tools_1.3-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/harvest-tools_1.3-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/harvest-tools_1.3-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/b1/harvest-tools_1.3-8_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.2GymqurU/b2/harvest-tools_1.3-8_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.408s) 0.408s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 752ms CPU time consumed: 746ms Wed May 8 01:03:13 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 01:03:13 UTC 2024 I: harvest-tools from trixie built successfully and reproducibly on armhf. Wed May 8 01:03:15 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 01:03:15 UTC 2024 I: Submitting 8.0K b1/harvest-tools_1.3-8_armhf.buildinfo.asc Wed May 8 01:03:17 UTC 2024 I: Submitting 8.0K b2/harvest-tools_1.3-8_armhf.buildinfo.asc Wed May 8 01:03:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 01:03:18 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 01:03:18 UTC 2024 I: Removing signed harvest-tools_1.3-8_armhf.buildinfo.asc files: removed './b1/harvest-tools_1.3-8_armhf.buildinfo.asc' removed './b2/harvest-tools_1.3-8_armhf.buildinfo.asc'