Thu Jul 18 09:37:58 UTC 2024 I: starting to build fastani/trixie/armhf on jenkins on '2024-07-18 09:37' Thu Jul 18 09:37:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_7/4196/console.log Thu Jul 18 09:37:58 UTC 2024 I: Downloading source for trixie/fastani=1.33-3 --2024-07-18 09:37:58-- http://deb.debian.org/debian/pool/main/f/fastani/fastani_1.33-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1376 (1.3K) [text/prs.lines.tag] Saving to: ‘fastani_1.33-3.dsc’ 0K . 100% 138M=0s 2024-07-18 09:37:58 (138 MB/s) - ‘fastani_1.33-3.dsc’ saved [1376/1376] Thu Jul 18 09:37:58 UTC 2024 I: fastani_1.33-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fastani Binary: fastani Architecture: any Version: 1.33-3 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/ParBLiSS/FastANI Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/fastani Vcs-Git: https://salsa.debian.org/med-team/fastani.git Testsuite: autopkgtest Testsuite-Triggers: r-cran-genoplotr Build-Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev Package-List: fastani deb science optional arch=any Checksums-Sha1: 76fa45e734f13cf63a7f8374735a1befac402aee 2979201 fastani_1.33.orig.tar.gz 3b1dff759ab704c0f1b3a98b92248147921c33ce 6712 fastani_1.33-3.debian.tar.xz Checksums-Sha256: 0b18b3074094722fb1b2247c1a1c4eb96295fff369b837f422e05072740e0013 2979201 fastani_1.33.orig.tar.gz e0f5033cf50f69d7cdb19f3a676c85908809c9a01c5aabb049828e52365e9d92 6712 fastani_1.33-3.debian.tar.xz Files: f25b5a704b335ad86c089e4be18c1e23 2979201 fastani_1.33.orig.tar.gz 3af6836300f59c797ce0039f7bfa4c17 6712 fastani_1.33-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZQCYeAAKCRAqJ5BL1yQ+ 2m5HAPsGoVN2yeXQLrJxsHqpxeaAEmLU5rFP3r53+DmIaad2oQD/aRIURYjjCYJq j+bEnwJRj7VPD2dV7x1cffTyQsgsWAM= =8pIx -----END PGP SIGNATURE----- Thu Jul 18 09:37:58 UTC 2024 I: Checking whether the package is not for us Thu Jul 18 09:37:58 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Thu Jul 18 09:37:58 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Thu Jul 18 09:44:14 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 17 21:38:06 -12 2024 I: pbuilder-time-stamp: 1721295486 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastani_1.33-3.dsc] I: copying [./fastani_1.33.orig.tar.gz] I: copying [./fastani_1.33-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 12 16:57:28 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastani_1.33-3.dsc: no acceptable signature found dpkg-source: info: extracting fastani in fastani-1.33 dpkg-source: info: unpacking fastani_1.33.orig.tar.gz dpkg-source: info: unpacking fastani_1.33-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying drop-memcpy-wrapper.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying clean-tmp-files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29589/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='c5203569d4834987807aef4f31ab9826' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29589' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/pbuilderrc_LLz4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/b1 --logfile b1/build.log fastani_1.33-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-23-arm64 #1 SMP Debian 6.1.99-1 (2024-07-15) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/29589/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19407 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After unpacking 78.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-1 [195 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-1 [87.8 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-1 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-1 [1479 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.16 [891 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libgslcblas0 armhf 2.7.1+dfsg-6+b1 [79.6 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libgsl27 armhf 2.7.1+dfsg-6+b1 [767 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libgsl-dev armhf 2.7.1+dfsg-6+b1 [975 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Fetched 21.6 MB in 1s (30.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19407 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-1_armhf.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-1_armhf.deb ... Unpacking bsdextrautils (2.40.2-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-2_armhf.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-1_all.deb ... Unpacking autopoint (0.22.5-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.16_all.deb ... Unpacking libdebhelper-perl (13.16) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../21-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../23-libicu72_72.1-5_armhf.deb ... Unpacking libicu72:armhf (72.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../24-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-1_armhf.deb ... Unpacking gettext (0.22.5-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.16_all.deb ... Unpacking debhelper (13.16) ... Selecting previously unselected package libgslcblas0:armhf. Preparing to unpack .../29-libgslcblas0_2.7.1+dfsg-6+b1_armhf.deb ... Unpacking libgslcblas0:armhf (2.7.1+dfsg-6+b1) ... Selecting previously unselected package libgsl27:armhf. Preparing to unpack .../30-libgsl27_2.7.1+dfsg-6+b1_armhf.deb ... Unpacking libgsl27:armhf (2.7.1+dfsg-6+b1) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../31-libgsl-dev_2.7.1+dfsg-6+b1_armhf.deb ... Unpacking libgsl-dev (2.7.1+dfsg-6+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../32-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-5) ... Setting up bsdextrautils (2.40.2-1) ... Setting up libgslcblas0:armhf (2.7.1+dfsg-6+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.22.5-1) ... Setting up libgsl27:armhf (2.7.1+dfsg-6+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-1) ... Setting up libgsl-dev (2.7.1+dfsg-6+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Processing triggers for libc-bin (2.38-14) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fastani-1.33/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastani_1.33-3_source.changes dpkg-buildpackage: info: source package fastani dpkg-buildpackage: info: source version 1.33-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:59: warning: AC_OUTPUT should be used without arguments. configure.ac:59: You should run autoupdate. dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for g++ option to support OpenMP... -fopenmp checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/fastani-1.33' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fastani-1.33=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -DNDEBUG -std=c++11 -Isrc -I /usr/local//include -fopenmp -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 src/cgi/core_genome_identity.cpp -o fastANI -L/usr/local//lib -lgsl -lgslcblas -lstdc++ -lz -lm -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fastani-1.33' echo "I: Do nothing, defer this to d/install" I: Do nothing, defer this to d/install make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastani' in '../fastani_1.33-3_armhf.deb'. dpkg-deb: building package 'fastani-dbgsym' in '../fastani-dbgsym_1.33-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../fastani_1.33-3_armhf.buildinfo dpkg-genchanges --build=binary -O../fastani_1.33-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29589 and its subdirectories I: Current time: Wed Jul 17 21:44:02 -12 2024 I: pbuilder-time-stamp: 1721295842 Thu Jul 18 09:44:16 UTC 2024 I: 1st build successful. Starting 2nd build on remote node cbxi4a-armhf-rb.debian.net. Thu Jul 18 09:44:16 UTC 2024 I: Preparing to do remote build '2' on cbxi4a-armhf-rb.debian.net. Thu Jul 18 09:50:30 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. Thu Jul 18 09:50:33 UTC 2024 I: fastani_1.33-3_armhf.changes: Format: 1.8 Date: Tue, 12 Sep 2023 22:24:03 +0530 Source: fastani Binary: fastani fastani-dbgsym Architecture: armhf Version: 1.33-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: fastani - Fast alignment-free computation of whole-genome Average Nucleotid Closes: 1044381 Changes: fastani (1.33-3) unstable; urgency=medium . * Add patch to fix FTBFS with build after the build (Closes: #1044381) * Bump Standards-Version to 4.6.2 (no changes needed) Checksums-Sha1: ff2648ebfd18bd4b07e840a9d488db146d74319f 1470996 fastani-dbgsym_1.33-3_armhf.deb 6cbd47bfa7e4540ce6e10a7f964511a4d2ac9838 4972 fastani_1.33-3_armhf.buildinfo faf1ef6fc19c55026222fc5e470c15364b52be2d 88604 fastani_1.33-3_armhf.deb Checksums-Sha256: 4be1ad037c046beb942bceb3820708c571c3b8c034abe18770e50d64d85080ac 1470996 fastani-dbgsym_1.33-3_armhf.deb b1ba387ae74384b3611f87f2858590913c537cfd6853fed88cc5c7032cc497f2 4972 fastani_1.33-3_armhf.buildinfo 0447a654454de3f65f68517b0e139b07f6296b88c22898e42bb730e26236e260 88604 fastani_1.33-3_armhf.deb Files: 57256809a5d146f986c7b80d232a9ab1 1470996 debug optional fastani-dbgsym_1.33-3_armhf.deb 9b9778005fba5cdd805e2b0bf5a03936 4972 science optional fastani_1.33-3_armhf.buildinfo 5f9544f8584ce2d2d4c093086faedf7c 88604 science optional fastani_1.33-3_armhf.deb Thu Jul 18 09:50:34 UTC 2024 I: diffoscope 272 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_7-4196.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/fastani_1.33-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/fastani_1.33-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/fastani_1.33-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/b1/fastani_1.33-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.OKml4Apq/b2/fastani_1.33-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.391s) 0.391s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 759ms CPU time consumed: 760ms Thu Jul 18 09:50:35 UTC 2024 I: diffoscope 272 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 18 09:50:35 UTC 2024 I: fastani from trixie built successfully and reproducibly on armhf. Thu Jul 18 09:50:36 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jul 18 09:50:36 UTC 2024 I: Submitting 8.0K b1/fastani_1.33-3_armhf.buildinfo.asc Thu Jul 18 09:50:37 UTC 2024 I: Submitting 8.0K b2/fastani_1.33-3_armhf.buildinfo.asc Thu Jul 18 09:50:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 18 09:50:38 UTC 2024 I: Done submitting .buildinfo files. Thu Jul 18 09:50:38 UTC 2024 I: Removing signed fastani_1.33-3_armhf.buildinfo.asc files: removed './b1/fastani_1.33-3_armhf.buildinfo.asc' removed './b2/fastani_1.33-3_armhf.buildinfo.asc'