Mon Apr 15 00:11:06 UTC 2024 I: starting to build epcr/trixie/armhf on jenkins on '2024-04-15 00:10' Mon Apr 15 00:11:06 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_22/3259/console.log Mon Apr 15 00:11:06 UTC 2024 I: Downloading source for trixie/epcr=2.3.12-1-9 --2024-04-15 00:11:06-- http://deb.debian.org/debian/pool/main/e/epcr/epcr_2.3.12-1-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘epcr_2.3.12-1-9.dsc’ 0K . 100% 254M=0s 2024-04-15 00:11:06 (254 MB/s) - ‘epcr_2.3.12-1-9.dsc’ saved [2026/2026] Mon Apr 15 00:11:07 UTC 2024 I: epcr_2.3.12-1-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: epcr Binary: ncbi-epcr Architecture: any Version: 2.3.12-1-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: https://www.ncbi.nlm.nih.gov/tools/epcr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/epcr Vcs-Git: https://salsa.debian.org/med-team/epcr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: ncbi-epcr deb science optional arch=any Checksums-Sha1: b63d03b5bd9e25989c0da27aa56c990057636b34 76840 epcr_2.3.12-1.orig.tar.gz 1267283af28487190f002fa8152742c154b0cd0b 55888 epcr_2.3.12-1-9.debian.tar.xz Checksums-Sha256: 92613a09cbba3eab66916488063b56e2a3b50a82e5308b1731b6b90d232b8275 76840 epcr_2.3.12-1.orig.tar.gz b90159da3b91073b692a6c8040c897d77f238dcbbdbc810744d95adfa340749f 55888 epcr_2.3.12-1-9.debian.tar.xz Files: 516b111f78769af24393e61b0bf7fd80 76840 epcr_2.3.12-1.orig.tar.gz 265e43f3726fb123c05d4e41c570216a 55888 epcr_2.3.12-1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/OjHYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEe6xAAiy5oxkk4jqpcxMMR48F17yN4fUYBLcmp u9qCZQCVm1Iu//I+96cUROfB3OPUoq6a8HzPn4khkUA0DhXHk44H8Jp/GXjVQ8gQ +OOjpfPZC4zgonP+QSJs/HoqN7Ll5gqqcNnE+yAeVnzl2EXFvlOMHcF5qex5398H VgoW1CYP6lHfhpiZ6o3heC9Kyzgffei5VcgzQ/qzil1yYpULrNVymiab1fpSG1v5 nucTSl4tDSUjMRvmsw8dSXx07WthqXFZNJM3yWt/wojFsnchbe2QCdqfk4wqhPlA TWyiUm+tCmZ/jz4+DO5ymqh/XZN7IND1prgQALLL043m26SPeYksHb/kFPlDRaV6 KGtw3ut48O4I3YKk3DhWDC+vE/Ha9bjnAzz5eRN59gU3J20IFTb/qBfGW62Nautn 93ngu57k6iRf7QxH4uSkiyuMDMlMRP05xlPsxDw7J4zns085i2fIKrfObjGOseBF 3b0TxjBKI3Mjm632XOT/+Se9zNN3o2toFL/M8jOo2gzDS653HaDjyQ0LYep67Iv6 BynbHhTDHrjxkg8p9cH91MCcrkv65ydKDhs75TSlyL/wZ3pVH7UldcnRqiwhu52M jR4aI8gT0o/Ep+7UUaVmEXM4kjHebVJVbV9SVwddMD3u8KqMifjJDjDxlm1sG1In 009Mn8RoFUY= =bhU2 -----END PGP SIGNATURE----- Mon Apr 15 00:11:07 UTC 2024 I: Checking whether the package is not for us Mon Apr 15 00:11:07 UTC 2024 I: Starting 1st build on remote node cbxi4b-armhf-rb.debian.net. Mon Apr 15 00:11:07 UTC 2024 I: Preparing to do remote build '1' on cbxi4b-armhf-rb.debian.net. Mon Apr 15 00:33:04 UTC 2024 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 14 12:11:22 -12 2024 I: pbuilder-time-stamp: 1713139882 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [epcr_2.3.12-1-9.dsc] I: copying [./epcr_2.3.12-1.orig.tar.gz] I: copying [./epcr_2.3.12-1-9.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 7 20:11:34 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./epcr_2.3.12-1-9.dsc: no acceptable signature found dpkg-source: info: extracting epcr in epcr-2.3.12-1 dpkg-source: info: unpacking epcr_2.3.12-1.orig.tar.gz dpkg-source: info: unpacking epcr_2.3.12-1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_clean_target.patch dpkg-source: info: applying fix_header_location.patch dpkg-source: info: applying ensure_build_options.patch dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27074/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='50e269ec32114c30be9e5e602014a65f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27074' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/pbuilderrc_CVcO --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/b1 --logfile b1/build.log epcr_2.3.12-1-9.dsc' SUDO_GID='116' SUDO_UID='112' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4b 6.1.0-20-armmp #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 14 11:28 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27074/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 68.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Fetched 18.3 MB in 5s (3540 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/epcr-2.3.12-1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../epcr_2.3.12-1-9_source.changes dpkg-buildpackage: info: source package epcr dpkg-buildpackage: info: source version 2.3.12-1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' rm -fr epcr rm -f *_depend.mk rm -f libepcr.a *.o rm -f e-PCR famap fahash re-PCR make[1]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_configure -O--no-parallel debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' dh_auto_build -- links depend all OPTIMIZE=6 make -j1 "INSTALL=install --strip-program=true" links depend all OPTIMIZE=6 make[2]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' links ; \ done make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' depend ; \ done make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./faread.cpp ./fast_seqio_read.cpp ./fast_seqio_write.cpp ./hashset.cpp ./mmap.cpp ./align.cpp ./stsmatch_i.cpp ./stsmatch_m.cpp ./stsfilter.cpp ./stsmatch.cpp ./fahash_create.cpp ./fahash_create1.cpp ./fahash_create2.cpp ./fahash_lookup.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./libepcr_depend.mk make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./e-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdepcr_depend.mk make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./famap_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfamap_depend.mk make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./fahash_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfahash_depend.mk make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./re-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdrpcr_depend.mk make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' all ; \ done make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c faread.cpp -o faread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_read.cpp -o fast_seqio_read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_write.cpp -o fast_seqio_write.o fast_seqio_write.cpp:45:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | FILE * f = fopen64( fname.c_str(), "w"FILE_BINARY ); | ^ In file included from /usr/include/c++/13/vector:72, from ./epcr/fast_seqio.hpp:37, from fast_seqio_write.cpp:30: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ncbi::pcr_tools::CFastaMapPrepare::CbkEntryBegin()' at fast_seqio_write.cpp:136:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ncbi::pcr_tools::CFastaMapPrepare::CbkEntryBegin()' at fast_seqio_write.cpp:137:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c hashset.cpp -o hashset.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c mmap.cpp -o mmap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c align.cpp -o align.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_i.cpp -o stsmatch_i.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_m.cpp -o stsmatch_m.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsfilter.cpp -o stsfilter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch.cpp -o stsmatch.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create.cpp -o fahash_create.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create1.cpp -o fahash_create1.o In file included from /usr/include/c++/13/vector:72, from ./epcr/fast_seqio.hpp:37, from ./epcr/fahash.hpp:33, from fahash_create1.cpp:30: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::pcr_tools::CFaData::SSeqDesc}; _Tp = ncbi::pcr_tools::CFaData::SSeqDesc; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::pcr_tools::CFaData::SSeqDesc}; _Tp = ncbi::pcr_tools::CFaData::SSeqDesc; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::pcr_tools::CFaData::SSeqDesc; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ncbi::pcr_tools::CFaIndexer1::AddSequence(const char*, unsigned int, off64_t)' at fahash_create1.cpp:53:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ncbi::pcr_tools::CFaIndexer1::DumpTables()' at fahash_create1.cpp:160:20: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create2.cpp -o fahash_create2.o fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()': fahash_create2.cpp:145:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 145 | auto_ptr fmap( 0 ); | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from fahash_create2.cpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/c++/13/vector:72, from ./epcr/fast_seqio.hpp:37, from ./epcr/fahash.hpp:33, from fahash_create2.cpp:30: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ncbi::pcr_tools::CFaData::SSeqDesc}; _Tp = ncbi::pcr_tools::CFaData::SSeqDesc; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ncbi::pcr_tools::CFaData::SSeqDesc}; _Tp = ncbi::pcr_tools::CFaData::SSeqDesc; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ncbi::pcr_tools::CFaData::SSeqDesc; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ncbi::pcr_tools::CFaIndexer2::AddSequence(const char*, unsigned int, off64_t)' at fahash_create2.cpp:52:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()' at fahash_create2.cpp:102:20: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_lookup.cpp -o fahash_lookup.o fahash_lookup.cpp: In member function 'void ncbi::pcr_tools::CFaLookup::AttachFile(const ncbi::pcr_tools::CFaData::string&)': fahash_lookup.cpp:161:13: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 161 | read( m_Fd, buff, 16 ); // signature | ~~~~^~~~~~~~~~~~~~~~~~ rm -f libepcr.a ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libepcr.a make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c e-PCR_main.cpp -o e-PCR_main.o e-PCR_main.cpp: In member function 'int CMain::Execute()': e-PCR_main.cpp:626:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 626 | auto_ptr cbk(0); | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from e-PCR_main.cpp:40: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ rm -f e-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o e-PCR ./e-PCR_main.o -lepcr make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c famap_main.cpp -o famap_main.o famap_main.cpp: In member function 'int CMain::Execute()': famap_main.cpp:145:1: warning: control reaches end of non-void function [-Wreturn-type] 145 | } | ^ rm -f famap g++ -Wl,-z,relro -Wl,-z,now -L. -o famap ./famap_main.o -lepcr make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_main.cpp -o fahash_main.o fahash_main.cpp: In member function 'int CMain::Build()': fahash_main.cpp:212:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 212 | auto_ptr indexer( | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from fahash_main.cpp:41: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:261:1: warning: control reaches end of non-void function [-Wreturn-type] 261 | } | ^ rm -f fahash g++ -Wl,-z,relro -Wl,-z,now -L. -o fahash ./fahash_main.o -lepcr make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[3]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/reproducible-path/epcr-2.3.12-1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c re-PCR_main.cpp -o re-PCR_main.o re-PCR_main.cpp: In member function 'int CMain::PrimerLookup()': re-PCR_main.cpp:365:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | auto_ptr rev(FlipSequence(argv[i])); | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from re-PCR_main.cpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ re-PCR_main.cpp:395:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | auto_ptr rev(FlipSequence(primer.c_str())); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:349:1: warning: control reaches end of non-void function [-Wreturn-type] 349 | } | ^ rm -f re-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o re-PCR ./re-PCR_main.o -lepcr make[3]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[2]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' make[1]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' dh_auto_test -O--no-parallel create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/epcr-2.3.12-1' # do nothing make[1]: Leaving directory '/build/reproducible-path/epcr-2.3.12-1' dh_install -O--no-parallel dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'ncbi-epcr' in '../ncbi-epcr_2.3.12-1-9_armhf.deb'. dpkg-deb: building package 'ncbi-epcr-dbgsym' in '../ncbi-epcr-dbgsym_2.3.12-1-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../epcr_2.3.12-1-9_armhf.buildinfo dpkg-genchanges --build=binary -O../epcr_2.3.12-1-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27074 and its subdirectories I: Current time: Sun Apr 14 12:32:55 -12 2024 I: pbuilder-time-stamp: 1713141175 Mon Apr 15 00:33:07 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net. Mon Apr 15 00:33:07 UTC 2024 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net. Mon Apr 15 00:35:50 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. Mon Apr 15 00:35:52 UTC 2024 I: epcr_2.3.12-1-9_armhf.changes: Format: 1.8 Date: Mon, 07 Dec 2020 21:08:43 +0100 Source: epcr Binary: ncbi-epcr ncbi-epcr-dbgsym Architecture: armhf Version: 2.3.12-1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s Changes: epcr (2.3.12-1-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Fix day-of-week for changelog entries 1.2.0-3, 1.2.0-2. Checksums-Sha1: 341ee84df9cd9c5a3692569460c4ebfdbb639541 5310 epcr_2.3.12-1-9_armhf.buildinfo dcfa8ba6311ff5db00d2b446dd5246d018a82fa8 1411992 ncbi-epcr-dbgsym_2.3.12-1-9_armhf.deb 17231ab8406cdf041bdc976e2cc459ec957d6aae 152928 ncbi-epcr_2.3.12-1-9_armhf.deb Checksums-Sha256: 3fa1125817d13f5034582de12490cc3692fea206770f8b2461a90f9d6023b6fd 5310 epcr_2.3.12-1-9_armhf.buildinfo d4847ccbd80b3de16bbff79ba910cd6233be6ddcbf82dd5b6aa67bf7a069bb0f 1411992 ncbi-epcr-dbgsym_2.3.12-1-9_armhf.deb 37e798c79a475ad42b0f8e4215f1a771c34da674c54c8347bf328b166d790aa3 152928 ncbi-epcr_2.3.12-1-9_armhf.deb Files: 85cb1065ba3747af5117df785aa7b126 5310 science optional epcr_2.3.12-1-9_armhf.buildinfo e85a33aa614c795f7cc1c2c5e9d4548d 1411992 debug optional ncbi-epcr-dbgsym_2.3.12-1-9_armhf.deb fdae511f0967951c22fc10d5193fec54 152928 science optional ncbi-epcr_2.3.12-1-9_armhf.deb Mon Apr 15 00:35:53 UTC 2024 I: diffoscope 264 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_22-3259.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/epcr_2.3.12-1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/epcr_2.3.12-1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/epcr_2.3.12-1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/b1/epcr_2.3.12-1-9_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.GFCEPcei/b2/epcr_2.3.12-1-9_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.350s) 0.350s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 677ms CPU time consumed: 674ms Mon Apr 15 00:35:54 UTC 2024 I: diffoscope 264 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 15 00:35:54 UTC 2024 I: epcr from trixie built successfully and reproducibly on armhf. Mon Apr 15 00:35:56 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 15 00:35:56 UTC 2024 I: Submitting 8.0K b1/epcr_2.3.12-1-9_armhf.buildinfo.asc Mon Apr 15 00:35:57 UTC 2024 I: Submitting 8.0K b2/epcr_2.3.12-1-9_armhf.buildinfo.asc Mon Apr 15 00:35:58 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 15 00:35:58 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 15 00:35:58 UTC 2024 I: Removing signed epcr_2.3.12-1-9_armhf.buildinfo.asc files: removed './b1/epcr_2.3.12-1-9_armhf.buildinfo.asc' removed './b2/epcr_2.3.12-1-9_armhf.buildinfo.asc'