Mon Nov 11 23:45:03 UTC 2024 I: starting to build dssp/trixie/armhf on jenkins on '2024-11-11 23:44' Mon Nov 11 23:45:03 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/10996/console.log Mon Nov 11 23:45:03 UTC 2024 I: Downloading source for trixie/dssp=4.4.10-1 --2024-11-11 23:45:04-- http://deb.debian.org/debian/pool/main/d/dssp/dssp_4.4.10-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2082 (2.0K) [text/prs.lines.tag] Saving to: ‘dssp_4.4.10-1.dsc’ 0K .. 100% 252M=0s 2024-11-11 23:45:04 (252 MB/s) - ‘dssp_4.4.10-1.dsc’ saved [2082/2082] Mon Nov 11 23:45:04 UTC 2024 I: dssp_4.4.10-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 4.4.10-1 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/dssp Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev Build-Depends: debhelper-compat (= 13), cmake, mrc, libcifpp-dev (>= 5.0.7.1-1~), libboost-dev, libboost-regex-dev, zlib1g-dev, catch2, libmcfp-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: 58d66af120b6a88df85931852fca320faeaabfd4 164259 dssp_4.4.10.orig.tar.gz 5c803a621915abb79432c78f35ffb4b1ae67b6dc 4492 dssp_4.4.10-1.debian.tar.xz Checksums-Sha256: b535d0410a79d612a2abea308d13d0ae2645bb925b13a86e5bb53c38b0fac723 164259 dssp_4.4.10.orig.tar.gz 27e6daad554e7456e1d778c5e0231ae432aa0cdcf76abd9f2375d0449a0c5360 4492 dssp_4.4.10-1.debian.tar.xz Files: 449f7b0b391e50ea2f123aebd1f4da40 164259 dssp_4.4.10.orig.tar.gz 2a755e9e243e4f6e5da8ad0a134853af 4492 dssp_4.4.10-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmcfYc0WHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzm2UD/9sJATFqr7WNJh18wX2aAZ3XEfO /sqH3udq6QGqJWBd6F3jyj5RPnnoEJfA62xr4ONaNnO+AkOmVBnqk8s2veY0fG0Q 0BOp46s/rP5c9kVD959ZpVUaPxSZpKXODvI9iAYT4kEJH6F7jyBvpNqZLsbqAIjG MgzpOauXU/O51ebYAKPJR0BfKBBWVW9jxwCIO04coKzz2Og0OGS7EeBLz3BZzIOr zfGzfhLfJbPu6exDSFC+PYe0UQyUjwZ6k4FEui70Afo5Ke0uWebMNnPx6kXMasMX aWWHjAxdrNgU4fAcrjPshNDXH4fsqGAXvtf4X75tSdFlwJQH8gfwk2J47R4QkX/F ItD1mnQPeJ4Jn0HEapKoqgQ/x+TgmW+fYq50Ff1abTZVNtyDrx+bbzhpkR8ZD/CZ A4MrG2tXmVkh4coDasq0FfYIhqW5GO+DY3W+b+4+jX32FGDKSjFrild/chYcgSx6 jbo0Zt0sMq8MnCnweT97c1O2WT+PjMAxNLOnqC2cCSMr8cocvgd5gp9ZPn8zWQXp rCRIDfjoOeZ5tUI75mqfb+mqTKK51p+OQt6XlvKcK9YNtLhzuCP/Ef8B2xoRGEIX IyB2pdXTZGvotUb6mgy2LuHgfewrKk41HLlE6TiC23A8ZjGEeRW2OA2gKvO+FOPD 2EhiFBdSlIQQg1ANLQ== =Gid4 -----END PGP SIGNATURE----- Mon Nov 11 23:45:04 UTC 2024 I: Checking whether the package is not for us Mon Nov 11 23:45:04 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Mon Nov 11 23:45:04 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Mon Nov 11 23:48:40 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 11 11:45:14 -12 2024 I: pbuilder-time-stamp: 1731368714 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dssp_4.4.10-1.dsc] I: copying [./dssp_4.4.10.orig.tar.gz] I: copying [./dssp_4.4.10-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Oct 28 10:05:01 2024 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dssp_4.4.10-1.dsc: no acceptable signature found dpkg-source: info: extracting dssp in dssp-4.4.10 dpkg-source: info: unpacking dssp_4.4.10.orig.tar.gz dpkg-source: info: unpacking dssp_4.4.10-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23268/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='4d412dd3c9fd446babea2d3ee09ab695' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23268' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/pbuilderrc_AXY5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/b1 --logfile b1/build.log dssp_4.4.10-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/23268/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, mrc, libcifpp-dev (>= 5.0.7.1-1~), libboost-dev, libboost-regex-dev, zlib1g-dev, catch2, libmcfp-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 5.0.7.1-1~); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on catch2; however: Package catch2 is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} catch2{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcatch2-dev{a} libcifpp-data{a} libcifpp-dev{a} libcifpp7{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libmcfp-dev{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} mrc{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 54.7 MB of archives. After unpacking 342 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libcatch2-dev armhf 3.7.1-0.4 [584 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf catch2 all 3.7.1-0.4 [5052 B] Get: 20 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.30.5-1 [2223 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b5 [296 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 29 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.10.1-2 [303 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.3-2 [83.1 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-2 [70.0 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-6 [134 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.30.5-1 [5365 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-5+b1 [187 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-3.2 [10.6 MB] Get: 58 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 59 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-3.2 [307 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-5+b1 [10.1 MB] Get: 61 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-3.2 [335 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 63 http://deb.debian.org/debian trixie/main armhf libcifpp-data all 7.0.7-3 [484 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libcifpp7 armhf 7.0.7-3 [855 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libcifpp-dev armhf 7.0.7-3 [111 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libmcfp-dev armhf 1.2.4-1 [16.0 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf mrc armhf 1.3.13-2 [50.8 kB] Fetched 54.7 MB in 1s (41.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_armhf.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-9_armhf.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Selecting previously unselected package libarchive13t64:armhf. Preparing to unpack .../22-libarchive13t64_3.7.4-1.1_armhf.deb ... Unpacking libarchive13t64:armhf (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../23-libbrotli1_1.1.0-2+b5_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b5) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../24-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../25-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../26-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../27-libkeyutils1_1.6.3-4_armhf.deb ... 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Preparing to unpack .../51-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../52-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../53-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../54-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../55-icu-devtools_72.1-5+b1_armhf.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libboost1.83-dev:armhf. Preparing to unpack .../56-libboost1.83-dev_1.83.0-3.2_armhf.deb ... Unpacking libboost1.83-dev:armhf (1.83.0-3.2) ... Selecting previously unselected package libboost-dev:armhf. 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Unpacking libcifpp-data (7.0.7-3) ... Selecting previously unselected package libcifpp7:armhf. Preparing to unpack .../63-libcifpp7_7.0.7-3_armhf.deb ... Unpacking libcifpp7:armhf (7.0.7-3) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../64-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libcifpp-dev:armhf. Preparing to unpack .../65-libcifpp-dev_7.0.7-3_armhf.deb ... Unpacking libcifpp-dev:armhf (7.0.7-3) ... Selecting previously unselected package libmcfp-dev. Preparing to unpack .../66-libmcfp-dev_1.2.4-1_armhf.deb ... Unpacking libmcfp-dev (1.2.4-1) ... Selecting previously unselected package mrc. Preparing to unpack .../67-mrc_1.3.13-2_armhf.deb ... Unpacking mrc (1.3.13-2) ... Setting up libexpat1:armhf (2.6.3-2) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libboost1.83-dev:armhf (1.83.0-3.2) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:armhf (1.83.0-3.2) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b5) ... Setting up libuv1t64:armhf (1.48.0-6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up mrc (1.3.13-2) ... Setting up libjsoncpp26:armhf (1.9.6-2) ... Setting up libproc2-0:armhf (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up icu-devtools (72.1-5+b1) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libcifpp-data (7.0.7-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libmcfp-dev (1.2.4-1) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:armhf (1.4.5-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libboost-dev:armhf (1.83.0.2+b2) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libcatch2-dev (3.7.1-0.4) ... Setting up libicu-dev:armhf (72.1-5+b1) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up catch2 (3.7.1-0.4) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libcifpp7:armhf (7.0.7-3) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libboost-regex1.83-dev:armhf (1.83.0-3.2) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libboost-regex-dev:armhf (1.83.0.2+b2) ... Setting up libarchive13t64:armhf (3.7.4-1.1) ... Setting up libcurl4t64:armhf (8.10.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcifpp-dev:armhf (7.0.7-3) ... Setting up cmake (3.30.5-1) ... Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dssp-4.4.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dssp_4.4.10-1_source.changes dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 4.4.10-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Git hash not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- The C compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Git hash not found -- Configuring done (1.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/dssp-4.4.10 -B/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make -f libdssp/CMakeFiles/dssp.dir/build.make libdssp/CMakeFiles/dssp.dir/depend make -f CMakeFiles/mrc-depends-file_mkdssp.dir/build.make CMakeFiles/mrc-depends-file_mkdssp.dir/depend make -f test/CMakeFiles/mrc-depends-file_unit-test-dssp.dir/build.make test/CMakeFiles/mrc-depends-file_unit-test-dssp.dir/depend make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10/libdssp /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/libdssp /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/libdssp/CMakeFiles/dssp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/CMakeFiles/mrc-depends-file_mkdssp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10/test /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/CMakeFiles/mrc-depends-file_unit-test-dssp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make -f libdssp/CMakeFiles/dssp.dir/build.make libdssp/CMakeFiles/dssp.dir/build make -f CMakeFiles/mrc-depends-file_mkdssp.dir/build.make CMakeFiles/mrc-depends-file_mkdssp.dir/build make -f test/CMakeFiles/mrc-depends-file_unit-test-dssp.dir/build.make test/CMakeFiles/mrc-depends-file_unit-test-dssp.dir/build make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' /usr/bin/mrc -o /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/mrc-mkdssp.dir/rsrc.obj -d /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/mrc-mkdssp.dir/rsrc.d /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /build/reproducible-path/dssp-4.4.10/libdssp/mmcif_pdbx/dssp-extension.dic make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test && /usr/bin/mrc -o /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/mrc-unit-test-dssp.dir/rsrc.obj -d /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/mrc-unit-test-dssp.dir/rsrc.d /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /build/reproducible-path/dssp-4.4.10/test/../libdssp/mmcif_pdbx/dssp-extension.dic make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' [ 10%] Building CXX object libdssp/CMakeFiles/dssp.dir/src/dssp.cpp.o cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/libdssp && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.4.10/libdssp/include -I/build/reproducible-path/dssp-4.4.10/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT libdssp/CMakeFiles/dssp.dir/src/dssp.cpp.o -MF CMakeFiles/dssp.dir/src/dssp.cpp.o.d -o CMakeFiles/dssp.dir/src/dssp.cpp.o -c /build/reproducible-path/dssp-4.4.10/libdssp/src/dssp.cpp [ 10%] Built target mrc-depends-file_unit-test-dssp [ 10%] Built target mrc-depends-file_mkdssp [ 20%] Building CXX object libdssp/CMakeFiles/dssp.dir/src/dssp-io.cpp.o cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/libdssp && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.4.10/libdssp/include -I/build/reproducible-path/dssp-4.4.10/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT libdssp/CMakeFiles/dssp.dir/src/dssp-io.cpp.o -MF CMakeFiles/dssp.dir/src/dssp-io.cpp.o.d -o CMakeFiles/dssp.dir/src/dssp-io.cpp.o -c /build/reproducible-path/dssp-4.4.10/libdssp/src/dssp-io.cpp [ 30%] Linking CXX static library libdssp.a cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/libdssp && /usr/bin/cmake -P CMakeFiles/dssp.dir/cmake_clean_target.cmake cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/libdssp && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssp.dir/link.txt --verbose=1 /usr/bin/ar qc libdssp.a CMakeFiles/dssp.dir/src/dssp.cpp.o "CMakeFiles/dssp.dir/src/dssp-io.cpp.o" /usr/bin/ranlib libdssp.a make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' [ 30%] Built target dssp make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/depend make -f test/CMakeFiles/unit-test-dssp.dir/build.make test/CMakeFiles/unit-test-dssp.dir/depend make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' [ 50%] Generating mrc-unit-test-dssp.dir/rsrc.obj [ 50%] Generating mrc-mkdssp.dir/rsrc.obj /usr/bin/mrc -o /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/mrc-mkdssp.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /build/reproducible-path/dssp-4.4.10/libdssp/mmcif_pdbx/dssp-extension.dic cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test && /usr/bin/mrc -o /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/mrc-unit-test-dssp.dir/rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /build/reproducible-path/dssp-4.4.10/test/../libdssp/mmcif_pdbx/dssp-extension.dic cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/CMakeFiles/mkdssp.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.4.10 /build/reproducible-path/dssp-4.4.10/test /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-test-dssp.dir/DependInfo.cmake "--color=" Dependencies file "mrc-mkdssp.dir/rsrc.d" is newer than depends file "/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/CMakeFiles/mkdssp.dir/compiler_depend.internal". Dependencies file "test/mrc-unit-test-dssp.dir/rsrc.d" is newer than depends file "/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/CMakeFiles/unit-test-dssp.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mkdssp Consolidate compiler generated dependencies of target unit-test-dssp make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/build make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/unit-test-dssp.dir/build.make test/CMakeFiles/unit-test-dssp.dir/build make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' [ 70%] Building CXX object test/CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o [ 70%] Building CXX object CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.4.10/libdssp/include -I/build/reproducible-path/dssp-4.4.10/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -MF CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o.d -o CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -c /build/reproducible-path/dssp-4.4.10/src/mkdssp.cpp cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.4.10/test/src -I/build/reproducible-path/dssp-4.4.10/test/include -I/build/reproducible-path/dssp-4.4.10/libdssp/include -I/build/reproducible-path/dssp-4.4.10/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o -MF CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o.d -o CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o -c /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp [ 80%] Building CXX object test/CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.4.10/test/src -I/build/reproducible-path/dssp-4.4.10/test/include -I/build/reproducible-path/dssp-4.4.10/libdssp/include -I/build/reproducible-path/dssp-4.4.10/libdssp/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o -MF CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o.d -o CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o -c /build/reproducible-path/dssp-4.4.10/libdssp/src/dssp-io.cpp In file included from /usr/include/c++/14/bits/uses_allocator_args.h:39, from /usr/include/c++/14/bits/memory_resource.h:41, from /usr/include/c++/14/string:68, from /usr/include/c++/14/stdexcept:39, from /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp:27: In constructor 'constexpr std::_Head_base<_Idx, _Head, false>::_Head_base(_UHead&&) [with _UHead = int&; unsigned int _Idx = 1; _Head = int]', inlined from 'constexpr std::_Tuple_impl<_Idx, _Head>::_Tuple_impl(_UHead&&) [with _UHead = int&; unsigned int _Idx = 1; _Head = int]' at /usr/include/c++/14/tuple:573:38, inlined from 'constexpr std::_Tuple_impl<_Idx, _Head, _Tail ...>::_Tuple_impl(_UHead&&, _UTail&& ...) [with _UHead = std::__cxx11::basic_string&; _UTail = {int&}; = void; unsigned int _Idx = 0; _Head = std::__cxx11::basic_string; _Tail = {int}]' at /usr/include/c++/14/tuple:317:38, inlined from 'constexpr std::tuple< >::tuple(_UTypes&& ...) [with _UTypes = {std::__cxx11::basic_string, std::allocator >&, int&}; _Elements = {std::__cxx11::basic_string, std::allocator >, int}]' at /usr/include/c++/14/tuple:984:44, inlined from 'void CATCH2_INTERNAL_TEST_6()' at /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp:252:37: /usr/include/c++/14/tuple:209:11: warning: 'seqID' may be used uninitialized [-Wmaybe-uninitialized] 209 | : _M_head_impl(std::forward<_UHead>(__h)) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp: In function 'void CATCH2_INTERNAL_TEST_6()': /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp:245:21: note: 'seqID' was declared here 245 | int seqID; | ^~~~~ In file included from /usr/include/catch2/internal/catch_assertion_handler.hpp:12, from /usr/include/catch2/internal/catch_test_macro_impl.hpp:12, from /usr/include/catch2/catch_test_macros.hpp:11, from /usr/include/catch2/catch_template_test_macros.hpp:20, from /usr/include/catch2/catch_all.hpp:37, from /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp:34: In constructor 'constexpr Catch::BinaryExpr::BinaryExpr(bool, LhsT, Catch::StringRef, RhsT) [with LhsT = int; RhsT = int]', inlined from 'constexpr std::enable_if_t<((bool)std::conjunction, Catch::capture_by_value >::value), Catch::BinaryExpr > Catch::operator==(ExprLhs&&, RhsT) [with RhsT = int; LhsT = int]' at /usr/include/catch2/internal/catch_decomposer.hpp:331:9, inlined from 'void CATCH2_INTERNAL_TEST_4()' at /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp:219:3: /usr/include/catch2/internal/catch_decomposer.hpp:201:13: warning: 'seqID' may be used uninitialized [-Wmaybe-uninitialized] 201 | m_rhs( rhs ) | ^~~~~~~~~~~~ /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp: In function 'void CATCH2_INTERNAL_TEST_4()': /build/reproducible-path/dssp-4.4.10/test/unit-test-dssp.cpp:211:21: note: 'seqID' was declared here 211 | int seqID; | ^~~~~ [ 90%] Linking CXX executable mkdssp /usr/bin/cmake -E cmake_link_script CMakeFiles/mkdssp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o "mrc-mkdssp.dir/rsrc.obj" -o mkdssp libdssp/libdssp.a /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.7 /usr/lib/arm-linux-gnueabihf/libz.so make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' [ 90%] Built target mkdssp [100%] Linking CXX executable unit-test-dssp cd /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit-test-dssp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.4.10=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro "CMakeFiles/unit-test-dssp.dir/unit-test-dssp.cpp.o" "CMakeFiles/unit-test-dssp.dir/__/libdssp/src/dssp-io.cpp.o" "mrc-unit-test-dssp.dir/rsrc.obj" -o unit-test-dssp ../libdssp/libdssp.a /usr/lib/arm-linux-gnueabihf/libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/arm-linux-gnueabihf/libz.so make[3]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' [100%] Built target unit-test-dssp make[2]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 make[1]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j3 UpdateCTestConfiguration from :/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unit-test-dssp 1: Test command: /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/unit-test-dssp "--data-dir" "/build/reproducible-path/dssp-4.4.10/test" "--rsrc-dir" "/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test/_deps/cifpp-src/rsrc" 1: Working Directory: /build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf/test 1: Test timeout computed to be: 1500 1: Randomness seeded to: 2462636561 1: =============================================================================== 1: All tests passed (1272 assertions in 5 test cases) 1: 1/1 Test #1: unit-test-dssp ................... Passed 2.36 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 2.36 sec make[1]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dssp/ cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/dssp-4.4.10/debian/dssp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/dssp-4.4.10 -B/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/lib/arm-linux-gnueabihf/libdssp.a -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/include/dssp.hpp -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/lib/cmake/dssp/dsspTargets.cmake -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/lib/cmake/dssp/dsspTargets-none.cmake -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/lib/cmake/dssp/dsspConfig.cmake -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/share/libcifpp/dssp-extension.dic -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/bin/mkdssp -- Installing: /build/reproducible-path/dssp-4.4.10/debian/dssp/usr/share/man/man1/mkdssp.1 make[1]: Leaving directory '/build/reproducible-path/dssp-4.4.10/obj-arm-linux-gnueabihf' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/dssp/usr/bin/mkdssp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dssp' in '../dssp_4.4.10-1_armhf.deb'. dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_4.4.10-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../dssp_4.4.10-1_armhf.buildinfo dpkg-genchanges --build=binary -O../dssp_4.4.10-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23268 and its subdirectories I: Current time: Mon Nov 11 11:48:29 -12 2024 I: pbuilder-time-stamp: 1731368909 Mon Nov 11 23:48:43 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32z-armhf-rb.debian.net. Mon Nov 11 23:48:43 UTC 2024 I: Preparing to do remote build '2' on virt32z-armhf-rb.debian.net. Mon Nov 11 23:55:48 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. Mon Nov 11 23:55:51 UTC 2024 I: dssp_4.4.10-1_armhf.changes: Format: 1.8 Date: Thu, 17 Oct 2024 18:50:13 +0200 Source: dssp Binary: dssp dssp-dbgsym Architecture: armhf Version: 4.4.10-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: dssp - protein secondary structure assignment based on 3D structure Closes: 1045047 Changes: dssp (4.4.10-1) unstable; urgency=medium . * New upstream. * Fix ftbfs, Closes: #1045047 Checksums-Sha1: 0c0e56f8f888d5006ad35bd29ba32a8baabd14cd 2917044 dssp-dbgsym_4.4.10-1_armhf.deb 944220b0841d5492a465d322c7a6077b1e3ef0ad 6197 dssp_4.4.10-1_armhf.buildinfo feaedd00a5c9d546c1b157207c654fb9f0a12b14 666528 dssp_4.4.10-1_armhf.deb Checksums-Sha256: e98a450dee2a60418a13a07a10da37d98d0b6c544eebb8d9200481f36722876d 2917044 dssp-dbgsym_4.4.10-1_armhf.deb cfa8cfd4a0953f31fa747b60b0a1eea9853a4a9713a6be798a06808259c11fef 6197 dssp_4.4.10-1_armhf.buildinfo 04eae15a612e4945d0f8c85fd3f3df43aa85349093a8300ac798766e2802fb49 666528 dssp_4.4.10-1_armhf.deb Files: 9e2ec7e5ab8e5140af7447c9e9d9d8f0 2917044 debug optional dssp-dbgsym_4.4.10-1_armhf.deb 44eb561cedfd0b9052fc1acf21220292 6197 science optional dssp_4.4.10-1_armhf.buildinfo 177d6115ea9213336ed6cd80ce48af11 666528 science optional dssp_4.4.10-1_armhf.deb Mon Nov 11 23:55:52 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_6-10996.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/dssp_4.4.10-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/dssp_4.4.10-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/dssp_4.4.10-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/b1/dssp_4.4.10-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.YJ3dpKQh/b2/dssp_4.4.10-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.445s) 0.445s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.056s) 0.056s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 797ms CPU time consumed: 794ms Mon Nov 11 23:55:53 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 11 23:55:53 UTC 2024 I: dssp from trixie built successfully and reproducibly on armhf. Mon Nov 11 23:55:55 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Nov 11 23:55:55 UTC 2024 I: Submitting 8.0K b1/dssp_4.4.10-1_armhf.buildinfo.asc Mon Nov 11 23:55:56 UTC 2024 I: Submitting 8.0K b2/dssp_4.4.10-1_armhf.buildinfo.asc Mon Nov 11 23:55:56 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 11 23:55:56 UTC 2024 I: Done submitting .buildinfo files. Mon Nov 11 23:55:56 UTC 2024 I: Removing signed dssp_4.4.10-1_armhf.buildinfo.asc files: removed './b1/dssp_4.4.10-1_armhf.buildinfo.asc' removed './b2/dssp_4.4.10-1_armhf.buildinfo.asc'