Wed May 8 05:39:45 UTC 2024 I: starting to build dssp/trixie/armhf on jenkins on '2024-05-08 05:39' Wed May 8 05:39:45 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_2/6551/console.log Wed May 8 05:39:45 UTC 2024 I: Downloading source for trixie/dssp=4.2.2-2 --2024-05-08 05:39:45-- http://deb.debian.org/debian/pool/main/d/dssp/dssp_4.2.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2067 (2.0K) [text/prs.lines.tag] Saving to: ‘dssp_4.2.2-2.dsc’ 0K .. 100% 287M=0s 2024-05-08 05:39:45 (287 MB/s) - ‘dssp_4.2.2-2.dsc’ saved [2067/2067] Wed May 8 05:39:45 UTC 2024 I: dssp_4.2.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 4.2.2-2 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/dssp Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev Build-Depends: debhelper-compat (= 13), cmake, mrc, libcifpp-dev (>= 5.0.7.1-1~), libboost-dev, libboost-regex-dev, zlib1g-dev, libmcfp-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: e3d86c8b5ebaa919b6b0e4525ba7ca4651ff9b6e 144356 dssp_4.2.2.orig.tar.gz 742234db088d7c37748bd13c69e23854e3461c39 4448 dssp_4.2.2-2.debian.tar.xz Checksums-Sha256: 59e2810f0c4a484d9b767448a045fce2bd48ad05f410d9e286d9dd3e9b82b823 144356 dssp_4.2.2.orig.tar.gz 499d099ceabd2d1c6bded0c59a3714b1978b9a9f166f78e756f223bdb1feefc0 4448 dssp_4.2.2-2.debian.tar.xz Files: 53df26e846064b6bd80bfc9d1c17bf6d 144356 dssp_4.2.2.orig.tar.gz 88141c14de1b30a94eb4c50ab66993f1 4448 dssp_4.2.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmPblcMWHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzm0DD/9DjrqtqdWaeDldHcho4Fu4ptap qEjcGk71n3RNeZYYaHYdNDs5TAPT1lXa3DGaTJU/DSnGDyBPMX0uiyQo73lxmO30 UwgASPkQJ00GpLucbOZBm02yxUZAWxpuG2DyUFwFnd81aECf3PbLVoZmb1XJDNan 6SDxvkkb/RvLDJ/TG4R9nWWhA1bTetGYpADNWqvdMis55Wu8lyAMovjEH4nVtm9c Vm9X+rE1+xfS1495LWzp2pqiXKGMDvvSq27xSAfqUC13JA66jil/ApVvIRUzUUcg rFtXCVZIoXx+4+32xF8kfm8642+1mp6SM3oBNbUIbKkzwOHWDl6AZMVGlFllzDNi Lyar/EI9aFN0wLR+LZIiNim2lYXHo4XGd9orz7V6BXcp2hCHC9//C3TWvAqJeiqh MlUSHfzaHuJUHw/vvXfjuHCEwbyduk7mKzzzNK+xrynsYvC3Wsu7IFno4HWwX46C 6RDaT7WiEGfjtQzJrDpZPipiyolJXkwmcsTdvPapkVDAM6eyDty3kKy6hEAcFeez 2dVjXLJR2DkKF8xMtRxGDT+BiW5WTdvs4BPSu+m2xy/mvruK1x90BKy5gXIJKOqh pSahGtTpAFZxaVCSUWOntKypweuvDKEUg1nTuFHWxWVVvmvJa6YZ2XVghDq31NYs zLY2euUbZtQ8u/ob0w== =GxVh -----END PGP SIGNATURE----- Wed May 8 05:39:45 UTC 2024 I: Checking whether the package is not for us Wed May 8 05:39:45 UTC 2024 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Wed May 8 05:39:45 UTC 2024 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Wed May 8 05:48:05 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 7 17:39:51 -12 2024 I: pbuilder-time-stamp: 1715146791 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dssp_4.2.2-2.dsc] I: copying [./dssp_4.2.2.orig.tar.gz] I: copying [./dssp_4.2.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 2 10:51:47 2023 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dssp_4.2.2-2.dsc: no acceptable signature found dpkg-source: info: extracting dssp in dssp-4.2.2 dpkg-source: info: unpacking dssp_4.2.2.orig.tar.gz dpkg-source: info: unpacking dssp_4.2.2-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9320/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='3db391a7f1bf4a17958d3bc1f5f99635' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9320' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/pbuilderrc_oPqZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/b1 --logfile b1/build.log dssp_4.2.2-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9320/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, mrc, libcifpp-dev (>= 5.0.7.1-1~), libboost-dev, libboost-regex-dev, zlib1g-dev, libmcfp-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 5.0.7.1-1~); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcifpp-data{a} libcifpp-dev{a} libcifpp5{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmcfp-dev{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} mrc{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 52.8 MB of archives. After unpacking 336 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.7.1-3 [391 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.2-2 [2167 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.2-2 [5215 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-2.1+b1 [10.6 MB] Get: 54 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 55 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-2.1+b1 [307 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 57 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-2.1+b1 [335 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 59 http://deb.debian.org/debian trixie/main armhf libcifpp-data all 5.0.7.1-3 [452 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libcifpp5 armhf 5.0.7.1-3+b1 [741 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libcifpp-dev armhf 5.0.7.1-3+b1 [86.5 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libmcfp-dev armhf 1.2.4-1 [16.0 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf mrc armhf 1.3.10-1 [45.8 kB] Fetched 52.8 MB in 1s (46.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../17-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:armhf. Preparing to unpack .../19-libarchive13t64_3.7.2-2_armhf.deb ... Unpacking libarchive13t64:armhf (3.7.2-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_armhf.deb ... 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Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../45-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../46-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../47-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../48-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../49-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../50-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package icu-devtools. 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Setting up libkrb5-3:armhf (1.20.1-6+b1) ... Setting up libboost-dev:armhf (1.83.0.2+b2) ... Setting up libssh2-1t64:armhf (1.11.0-4.1+b2) ... Setting up libicu-dev:armhf (72.1-4+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libcifpp5:armhf (5.0.7.1-3+b1) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up libboost-regex1.83-dev:armhf (1.83.0-2.1+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libboost-regex-dev:armhf (1.83.0.2+b2) ... Setting up libarchive13t64:armhf (3.7.2-2) ... Setting up libcurl4t64:armhf (8.7.1-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dssp-4.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dssp_4.2.2-2_source.changes dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 4.2.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:37 (include): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.29/Modules/Dart.cmake:47 (message): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:37 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for C++ include filesystem -- Looking for C++ include filesystem - found -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3") -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: regex Using resources compiled with -- Configuring done (7.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/dssp-4.2.2 -B/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' make -f CMakeFiles/dssp.dir/build.make CMakeFiles/dssp.dir/depend make -f CMakeFiles/mrc-depends-file_mkdssp.dir/build.make CMakeFiles/mrc-depends-file_mkdssp.dir/depend make[3]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' cd /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.2.2 /build/reproducible-path/dssp-4.2.2 /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/CMakeFiles/dssp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' cd /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.2.2 /build/reproducible-path/dssp-4.2.2 /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/CMakeFiles/mrc-depends-file_mkdssp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' make -f CMakeFiles/dssp.dir/build.make CMakeFiles/dssp.dir/build make -f CMakeFiles/mrc-depends-file_mkdssp.dir/build.make CMakeFiles/mrc-depends-file_mkdssp.dir/build make[3]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' /usr/bin/mrc -o /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/mkdssp_rsrc.obj -d /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/mkdssp_rsrc.d /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' [ 16%] Built target mrc-depends-file_mkdssp [ 16%] Building CXX object CMakeFiles/dssp.dir/src/dssp.cpp.o /usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.2.2/include -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/dssp.dir/src/dssp.cpp.o -MF CMakeFiles/dssp.dir/src/dssp.cpp.o.d -o CMakeFiles/dssp.dir/src/dssp.cpp.o -c /build/reproducible-path/dssp-4.2.2/src/dssp.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/functional:67, from /usr/include/cif++/condition.hpp:32, from /usr/include/cif++/category.hpp:31, from /usr/include/cif++/datablock.hpp:29, from /usr/include/cif++/file.hpp:32, from /usr/include/cif++.hpp:30, from /build/reproducible-path/dssp-4.2.2/include/dssp.hpp:32, from /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:29: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = accumulator::candidate; _Compare = __gnu_cxx::__ops::_Iter_less_val]': /usr/include/c++/13/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ In file included from /usr/include/c++/13/string:51, from /usr/include/c++/13/stdexcept:39, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/fs_fwd.h:35, from /usr/include/c++/13/filesystem:48, from /usr/include/cif++/utilities.hpp:31, from /usr/include/cif++.hpp:29: /usr/include/c++/13/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]': /usr/include/c++/13/bits/stl_algobase.h:2064:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2064 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:2064:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /usr/include/cif++/forward_decl.hpp:32, from /usr/include/cif++/category.hpp:29: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const accumulator::candidate&}; _Tp = accumulator::candidate; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:578:17, inlined from 'float dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:641:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:578:17, inlined from 'float dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:642:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:578:17, inlined from 'float dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:643:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:578:17, inlined from 'float dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:644:14: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = accumulator::candidate; _Alloc = std::allocator]', inlined from 'void accumulator::operator()(const point&, const point&, double, double)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:578:17, inlined from 'float dssp::residue::CalculateSurface(const point&, float, const std::vector&)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:647:15: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {dssp::residue}; _Tp = dssp::residue; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {dssp::residue}; _Tp = dssp::residue; _Alloc = std::allocator]', inlined from 'DSSP_impl::DSSP_impl(const cif::datablock&, int, int)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:1412:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]', inlined from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator >; _Predicate = DSSP_impl::findRes(const std::string&, int)::]' at /usr/include/c++/13/bits/stl_algo.h:3923:28, inlined from 'auto DSSP_impl::findRes(const std::string&, int)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:1345:22, inlined from 'void DSSP_impl::calculateSecondaryStructure()' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:1489:20: /usr/include/c++/13/bits/stl_algobase.h:2117:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2117 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2118 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]', inlined from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator >; _Predicate = DSSP_impl::findRes(const std::string&, int)::]' at /usr/include/c++/13/bits/stl_algo.h:3923:28, inlined from 'auto DSSP_impl::findRes(const std::string&, int)' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:1345:22, inlined from 'void DSSP_impl::calculateSecondaryStructure()' at /build/reproducible-path/dssp-4.2.2/src/dssp.cpp:1498:20: /usr/include/c++/13/bits/stl_algobase.h:2117:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2117 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2118 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 33%] Linking CXX static library libdssp.a /usr/bin/cmake -P CMakeFiles/dssp.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/dssp.dir/link.txt --verbose=1 /usr/bin/ar qc libdssp.a CMakeFiles/dssp.dir/src/dssp.cpp.o /usr/bin/ranlib libdssp.a make[3]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' [ 33%] Built target dssp make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/depend make[3]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' [ 50%] Generating mkdssp_rsrc.obj /usr/bin/mrc -o /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/mkdssp_rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic cd /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/dssp-4.2.2 /build/reproducible-path/dssp-4.2.2 /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/CMakeFiles/mkdssp.dir/DependInfo.cmake "--color=" Dependencies file "mkdssp_rsrc.d" is newer than depends file "/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/CMakeFiles/mkdssp.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target mkdssp make[3]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' make -f CMakeFiles/mkdssp.dir/build.make CMakeFiles/mkdssp.dir/build make[3]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' [ 83%] Building CXX object CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o [ 83%] Building CXX object CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o /usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf -I/build/reproducible-path/dssp-4.2.2/include -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -MF CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o.d -o CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o -c /build/reproducible-path/dssp-4.2.2/src/mkdssp.cpp /usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf -I/build/reproducible-path/dssp-4.2.2/include -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o -MF CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o.d -o CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o -c /build/reproducible-path/dssp-4.2.2/src/dssp-io.cpp [100%] Linking CXX executable mkdssp /usr/bin/cmake -E cmake_link_script CMakeFiles/mkdssp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/dssp-4.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro "CMakeFiles/mkdssp.dir/src/dssp-io.cpp.o" CMakeFiles/mkdssp.dir/src/mkdssp.cpp.o mkdssp_rsrc.obj -o mkdssp libdssp.a libdssp.a /usr/lib/arm-linux-gnueabihf/libcifpp.so.5.0.7.1 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.83.0 /usr/bin/ld: warning: mkdssp_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[3]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' [100%] Built target mkdssp make[2]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 make[1]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j3 UpdateCTestConfiguration from :/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! make[1]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dssp/ cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/dssp-4.2.2/debian/dssp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/dssp-4.2.2 -B/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/lib/arm-linux-gnueabihf/libdssp.a -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/lib/arm-linux-gnueabihf/cmake/dssp/dsspTargets.cmake -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/lib/arm-linux-gnueabihf/cmake/dssp/dsspTargets-none.cmake -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/include/dssp.hpp -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/lib/arm-linux-gnueabihf/cmake/dssp/dsspConfig.cmake -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/lib/arm-linux-gnueabihf/cmake/dssp/dsspConfigVersion.cmake -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/lib/arm-linux-gnueabihf/pkgconfig/libdssp.pc -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/bin/mkdssp -- Installing: /build/reproducible-path/dssp-4.2.2/debian/dssp/usr/share/man/man1/mkdssp.1 make[1]: Leaving directory '/build/reproducible-path/dssp-4.2.2/obj-arm-linux-gnueabihf' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/dssp/usr/bin/mkdssp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_4.2.2-2_armhf.deb'. dpkg-deb: building package 'dssp' in '../dssp_4.2.2-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../dssp_4.2.2-2_armhf.buildinfo dpkg-genchanges --build=binary -O../dssp_4.2.2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9320 and its subdirectories I: Current time: Tue May 7 17:47:54 -12 2024 I: pbuilder-time-stamp: 1715147274 Wed May 8 05:48:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net. Wed May 8 05:48:08 UTC 2024 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net. Wed May 8 05:58:12 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. Wed May 8 05:58:15 UTC 2024 I: dssp_4.2.2-2_armhf.changes: Format: 1.8 Date: Thu, 02 Feb 2023 11:48:45 +0100 Source: dssp Binary: dssp dssp-dbgsym Architecture: armhf Version: 4.2.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: dssp - protein secondary structure assignment based on 3D structure Changes: dssp (4.2.2-2) unstable; urgency=medium . * Fix dependency. Checksums-Sha1: 230e8f788066c1d0afb058e8d82b86b00a774af1 2773412 dssp-dbgsym_4.2.2-2_armhf.deb d14bd7400a4b34ec5af8bb970a987028bf2d72b5 6175 dssp_4.2.2-2_armhf.buildinfo 816035eba070e456d1360108ab658e9224b932f5 603812 dssp_4.2.2-2_armhf.deb Checksums-Sha256: bc5e6633a78f9926e4852385af148b3dbf7fd6b4a4b4ff71c3fe35201fd8b94c 2773412 dssp-dbgsym_4.2.2-2_armhf.deb 777f37e3a0fe9040d752d5b001660c7a3dbfa014312774a5c56a40028e0a8258 6175 dssp_4.2.2-2_armhf.buildinfo 83294edc093500ef3799e707dc583fa83e77fc95d07530efa038765084a2cd95 603812 dssp_4.2.2-2_armhf.deb Files: d46980edb224c6e1a1962aaaa9a1517e 2773412 debug optional dssp-dbgsym_4.2.2-2_armhf.deb 0dd0869a0a972005fdd98efa1b0bb8ee 6175 science optional dssp_4.2.2-2_armhf.buildinfo 999baf908dc1901229261528a7e81669 603812 science optional dssp_4.2.2-2_armhf.deb Wed May 8 05:58:16 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_2-6551.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/dssp_4.2.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/dssp_4.2.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/dssp_4.2.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/b1/dssp_4.2.2-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.tzBrS5gm/b2/dssp_4.2.2-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.396s) 0.396s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.050s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 746ms CPU time consumed: 741ms Wed May 8 05:58:17 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 05:58:17 UTC 2024 I: dssp from trixie built successfully and reproducibly on armhf. Wed May 8 05:58:19 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 05:58:19 UTC 2024 I: Submitting 8.0K b1/dssp_4.2.2-2_armhf.buildinfo.asc Wed May 8 05:58:20 UTC 2024 I: Submitting 8.0K b2/dssp_4.2.2-2_armhf.buildinfo.asc Wed May 8 05:58:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 05:58:21 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 05:58:21 UTC 2024 I: Removing signed dssp_4.2.2-2_armhf.buildinfo.asc files: removed './b1/dssp_4.2.2-2_armhf.buildinfo.asc' removed './b2/dssp_4.2.2-2_armhf.buildinfo.asc'