Mon Apr 15 01:37:44 UTC 2024 I: starting to build damapper/trixie/armhf on jenkins on '2024-04-15 01:37' Mon Apr 15 01:37:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_28/3046/console.log Mon Apr 15 01:37:44 UTC 2024 I: Downloading source for trixie/damapper=0.0+git20210330.ab45103-2 --2024-04-15 01:37:44-- http://deb.debian.org/debian/pool/main/d/damapper/damapper_0.0%2bgit20210330.ab45103-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2131 (2.1K) [text/prs.lines.tag] Saving to: ‘damapper_0.0+git20210330.ab45103-2.dsc’ 0K .. 100% 285M=0s 2024-04-15 01:37:44 (285 MB/s) - ‘damapper_0.0+git20210330.ab45103-2.dsc’ saved [2131/2131] Mon Apr 15 01:37:45 UTC 2024 I: damapper_0.0+git20210330.ab45103-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: damapper Binary: damapper Architecture: any Version: 0.0+git20210330.ab45103-2 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/thegenemyers/DAMAPPER Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/damapper Vcs-Git: https://salsa.debian.org/med-team/damapper.git Testsuite: autopkgtest Testsuite-Triggers: daligner, dazzdb Build-Depends: debhelper-compat (= 13) Package-List: damapper deb science optional arch=any Checksums-Sha1: 3e88ae69d0c781c534a6bef0c39ae512608b5d58 77792 damapper_0.0+git20210330.ab45103.orig.tar.xz 7c6525611b8e4bf472461a59e478ed3485da932f 10576 damapper_0.0+git20210330.ab45103-2.debian.tar.xz Checksums-Sha256: 23edd80e8745f614b63d32dcbdc0970eab629d11d1a4699831f388a4339bf7da 77792 damapper_0.0+git20210330.ab45103.orig.tar.xz a3f132aab27b6ace7afcea17748a866a08151e33a2e0d5a43b7a3f460a85bfde 10576 damapper_0.0+git20210330.ab45103-2.debian.tar.xz Files: ab3427f8f64df83253953212eef5fc50 77792 damapper_0.0+git20210330.ab45103.orig.tar.xz f753ae965e55e47ef10ca62e70c40199 10576 damapper_0.0+git20210330.ab45103-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVzKIURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFBeg/+J1dL4r19QcWAK5ViONMQjqoyhMimi12x OrDjeQoKIlL+ZiW7pDSxToNXhu0oh7cYJcR7CqibbjPS2Tsg0efXvbFCezKHZFMj U0IQwKSX5Eh8s3MbcXD6GPPBd7On3zWVaqBOYBDoftD5hXv0ir4HSyh8MYvj4+ia GpOgMQVQxg/RUjL3bLUfRSa1Xns7bFKG/NLMegsvM6CGRpGMgqoz2rLhllinuU7v nEl86xOqU0A1cZ0c3vt6+53HKcNy7QQEQB2SUZPQ+9o2TpZzz3eQimp4yGyAoBlG tkRKWedKVjJJ3lZrVshO+ipWlckpm+OAjGOMDYLw43ZEAkFjrEIN7Y722nkw1B6n kIh8X95OFvpDN0Tg2CIXvYxKozW1T8eQpuR4lDmeF6K8+Wgz3VOjephJ3bsuNaNs SvEEX3R2mkoNgl0R5PiAVR9IN2mPQQ6hv4GLDw/YC6xXvs0Wj7uAKqVUTL64HhrY dtU2/fzR5i/ZTM4YETRI+nVoSA2QQleZXWNlb7aBhTygGi8Tz7ZTqUM06TSIcLGY HPV82EP26rTFwb41Na9gp8wzDP/fmU3iFzYmpkyIv7ia3JUljyXxWgU48qTQ9C0t DwIlY8op5IvhFFkFWSJrLNysIeR+7/S1XY7XGVdwzf0ZYxzwre9/4ztUbUGrIs+6 qonst97Cv6Y= =iolD -----END PGP SIGNATURE----- Mon Apr 15 01:37:45 UTC 2024 I: Checking whether the package is not for us Mon Apr 15 01:37:45 UTC 2024 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Mon Apr 15 01:37:45 UTC 2024 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Mon Apr 15 01:40:42 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 14 13:37:51 -12 2024 I: pbuilder-time-stamp: 1713145071 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [damapper_0.0+git20210330.ab45103-2.dsc] I: copying [./damapper_0.0+git20210330.ab45103.orig.tar.xz] I: copying [./damapper_0.0+git20210330.ab45103-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 8 14:30:29 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./damapper_0.0+git20210330.ab45103-2.dsc: no acceptable signature found dpkg-source: info: extracting damapper in damapper-0.0+git20210330.ab45103 dpkg-source: info: unpacking damapper_0.0+git20210330.ab45103.orig.tar.xz dpkg-source: info: unpacking damapper_0.0+git20210330.ab45103-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying modify_makefile.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6571/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='d3d9e259c566436c8ef1d7842016a609' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6571' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/pbuilderrc_XeAA --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/b1 --logfile b1/build.log damapper_0.0+git20210330.ab45103-2.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 14 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/6571/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 68.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Fetched 18.3 MB in 2s (12.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/damapper-0.0+git20210330.ab45103/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../damapper_0.0+git20210330.ab45103-2_source.changes dpkg-buildpackage: info: source package damapper dpkg-buildpackage: info: source version 0.0+git20210330.ab45103-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/reproducible-path/damapper-0.0+git20210330.ab45103' rm -f damapper HPC.damapper rm -fr *.dSYM rm -f damapper.tar.gz make[1]: Leaving directory '/build/reproducible-path/damapper-0.0+git20210330.ab45103' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/damapper-0.0+git20210330.ab45103' cc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -z now -g -O2 -ffile-prefix-map=/build/reproducible-path/damapper-0.0+git20210330.ab45103=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o damapper damapper.c map.c align.c DB.c QV.c -lpthread -lm cc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -z now -g -O2 -ffile-prefix-map=/build/reproducible-path/damapper-0.0+git20210330.ab45103=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o HPC.damapper HPC.damapper.c DB.c QV.c -lm map.c: In function ‘print_tree’: map.c:1233:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, | ~~~~~ | | | int map.c:1233:26: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c:1233:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 11 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, 1235 | (h->rgt==NULL)?-1:h->rgt-ref,(h->from==NULL)?-1:h->from-ref, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c:1233:66: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 12 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, 1235 | (h->rgt==NULL)?-1:h->rgt-ref,(h->from==NULL)?-1:h->from-ref, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c:1233:72: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 13 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d ...... 1236 | (h->orig==NULL)?-1:h->orig-ref); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c: In function ‘Entwine’: map.c:1962:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1962 | uint16 *ktrace = tbuf->trace + (uint64) (kpath->trace); | ^ map.c:1963:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1963 | uint16 *jtrace = tbuf->trace + (uint64) (jpath->trace); | ^ map.c: In function ‘Fusion’: map.c:2088:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2088 | { uint16 *t = tbuf->trace + (uint64) (path1->trace); | ^ map.c:2096:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2096 | { uint16 *t = tbuf->trace + (uint64) (path2->trace); | ^ map.c: In function ‘report_thread’: map.c:2552:53: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2552 | amatch[novl].path.trace = (void *) (tbuf->top); | ^ map.c:2569:57: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2569 | bmatch[novl].path.trace = (void *) (tbuf->top); | ^ map.c:2744:58: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2744 | { amatch[p].path.trace = tbuf->trace + (uint64) (amatch[p].path.trace); | ^ map.c:2764:62: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2764 | { bmatch[p].path.trace = tbuf->trace + (uint64) (bmatch[p].path.trace); | ^ map.c:2800:58: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2800 | { bmatch[p].path.trace = tbuf->trace + (uint64) (bmatch[p].path.trace); | ^ QV.c: In function ‘Build_Table’: QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function ‘Huffman’: QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function ‘Build_Table’: QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function ‘Huffman’: QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ make[1]: Leaving directory '/build/reproducible-path/damapper-0.0+git20210330.ab45103' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/damapper/ make -j3 install DESTDIR=/build/reproducible-path/damapper-0.0\+git20210330.ab45103/debian/damapper AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/damapper-0.0+git20210330.ab45103' mkdir bin/ cp -f damapper HPC.damapper bin/ make[1]: Leaving directory '/build/reproducible-path/damapper-0.0+git20210330.ab45103' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'damapper-dbgsym' in '../damapper-dbgsym_0.0+git20210330.ab45103-2_armhf.deb'. dpkg-deb: building package 'damapper' in '../damapper_0.0+git20210330.ab45103-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../damapper_0.0+git20210330.ab45103-2_armhf.buildinfo dpkg-genchanges --build=binary -O../damapper_0.0+git20210330.ab45103-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6571 and its subdirectories I: Current time: Sun Apr 14 13:40:34 -12 2024 I: pbuilder-time-stamp: 1713145234 Mon Apr 15 01:40:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node cbxi4pro0-armhf-rb.debian.net. Mon Apr 15 01:40:45 UTC 2024 I: Preparing to do remote build '2' on cbxi4pro0-armhf-rb.debian.net. Mon Apr 15 01:44:15 UTC 2024 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. Mon Apr 15 01:44:17 UTC 2024 I: damapper_0.0+git20210330.ab45103-2_armhf.changes: Format: 1.8 Date: Fri, 08 Dec 2023 19:45:50 +0700 Source: damapper Binary: damapper damapper-dbgsym Architecture: armhf Version: 0.0+git20210330.ab45103-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: damapper - long read to reference genome mapping tool Closes: 1044221 1049504 Changes: damapper (0.0+git20210330.ab45103-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.6.2 (routine-update) * d/upstream/metadata: Add missing fields (Repository, Repository-Browse) * d/clean: Remove autogenerated bin directory (Closes: #1044221, #1049504) * d/patches: Fix blhc by adding LDFLAGS to Makefile and set Forwarded field to not-needed Checksums-Sha1: 07ee1a9f27478c239e12cff20a29e9a3b97532d4 344020 damapper-dbgsym_0.0+git20210330.ab45103-2_armhf.deb 10d29123f47d49fd7008f053996622c90a0f4841 5424 damapper_0.0+git20210330.ab45103-2_armhf.buildinfo f3eee197547ae9036e8264777423de6d4d720366 97600 damapper_0.0+git20210330.ab45103-2_armhf.deb Checksums-Sha256: ffe814a9d6b3d0946ba36e8c58ca80107f821ab6826ffe3bd8d8ff3acd51dbc7 344020 damapper-dbgsym_0.0+git20210330.ab45103-2_armhf.deb ca2694cbadcec659f5e85fe2a9b7a94317aa42eb33c9f28e26881d65fc26d7df 5424 damapper_0.0+git20210330.ab45103-2_armhf.buildinfo ce9c83430b2fd54b4cb6f74157fc97bf3c0a9020990b8ec84146e8b2d7e024e2 97600 damapper_0.0+git20210330.ab45103-2_armhf.deb Files: 1d7295dd3904ca504b00a4da0a7583f2 344020 debug optional damapper-dbgsym_0.0+git20210330.ab45103-2_armhf.deb 6181c251c4492031db145094295c5f21 5424 science optional damapper_0.0+git20210330.ab45103-2_armhf.buildinfo 6f64cf6c71982e6598b5316a43a21f69 97600 science optional damapper_0.0+git20210330.ab45103-2_armhf.deb Mon Apr 15 01:44:18 UTC 2024 I: diffoscope 264 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_28-3046.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/damapper_0.0+git20210330.ab45103-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/damapper_0.0+git20210330.ab45103-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/damapper_0.0+git20210330.ab45103-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/b1/damapper_0.0+git20210330.ab45103-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.Snl3DI6D/b2/damapper_0.0+git20210330.ab45103-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 641ms CPU time consumed: 641ms Mon Apr 15 01:44:19 UTC 2024 I: diffoscope 264 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 15 01:44:19 UTC 2024 I: damapper from trixie built successfully and reproducibly on armhf. Mon Apr 15 01:44:21 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 15 01:44:21 UTC 2024 I: Submitting 8.0K b1/damapper_0.0+git20210330.ab45103-2_armhf.buildinfo.asc Mon Apr 15 01:44:22 UTC 2024 I: Submitting 8.0K b2/damapper_0.0+git20210330.ab45103-2_armhf.buildinfo.asc Mon Apr 15 01:44:22 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 15 01:44:22 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 15 01:44:22 UTC 2024 I: Removing signed damapper_0.0+git20210330.ab45103-2_armhf.buildinfo.asc files: removed './b1/damapper_0.0+git20210330.ab45103-2_armhf.buildinfo.asc' removed './b2/damapper_0.0+git20210330.ab45103-2_armhf.buildinfo.asc'