Sat Sep 7 10:54:30 UTC 2024 I: starting to build bowtie2/trixie/armhf on jenkins on '2024-09-07 10:54' Sat Sep 7 10:54:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/8975/console.log Sat Sep 7 10:54:30 UTC 2024 I: Downloading source for trixie/bowtie2=2.5.4-1 --2024-09-07 10:54:31-- http://deb.debian.org/debian/pool/main/b/bowtie2/bowtie2_2.5.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2405 (2.3K) [text/prs.lines.tag] Saving to: ‘bowtie2_2.5.4-1.dsc’ 0K .. 100% 358M=0s 2024-09-07 10:54:31 (358 MB/s) - ‘bowtie2_2.5.4-1.dsc’ saved [2405/2405] Sat Sep 7 10:54:31 UTC 2024 I: bowtie2_2.5.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bowtie2 Binary: bowtie2, bowtie2-examples Architecture: any all Version: 2.5.4-1 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Mestiashvili , Andreas Tille Homepage: https://bowtie-bio.sourceforge.net/bowtie2 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/bowtie2 Vcs-Git: https://salsa.debian.org/med-team/bowtie2.git Testsuite: autopkgtest Testsuite-Triggers: libclone-perl, libfile-which-perl, libsys-info-perl, libtest-deep-perl Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, help2man, pandoc , libtbb-dev, python3, liblocal-lib-perl, libtest-deep-perl , libclone-perl , libfile-which-perl , zlib1g-dev, libsimde-dev Package-List: bowtie2 deb science optional arch=any bowtie2-examples deb science optional arch=all Checksums-Sha1: e76be3d7aed9a1f05b743811b4a11fc62f9971aa 10638569 bowtie2_2.5.4.orig.tar.gz e5d09b9614e25e396c06522903f13de380e068c9 22616 bowtie2_2.5.4-1.debian.tar.xz Checksums-Sha256: 841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13 10638569 bowtie2_2.5.4.orig.tar.gz 83051931731bd5e23f0600da98cea0867caed701445cb573bc399b918f49e194 22616 bowtie2_2.5.4-1.debian.tar.xz Files: c51944797f47e0c82f3c3041a4a5d355 10638569 bowtie2_2.5.4.orig.tar.gz 4fcc7e0fa83f8df6bc1ff87bdc06c713 22616 bowtie2_2.5.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmazf5cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGrvA/8CvFlu+GvB/5BHKZt6HBc4GbzR2G5cAaT 3tyxwxi3XRCoOck0AJFXMy5yWw5yBW11KsQtE9J0+Bu7OAXYeOynkARb/ur1kBoX G7mhiGJrhipRpfwIcQ59aeRKg+s1G4LDxjSA3tlYv2nBIMzAoSZA1QbIbngy7dBc p1fL3MwbP3GRkoqaCufX9ayrnFZ02JFA7wP7l0A+tY3F9xPuF3IyJPpfxMkqwLs2 a6ny2XkG5CbCPq5OOdSXUlAdI21NMX2L7W1QG2YbOOMS19PLNqHVJsLSFW4sv2oK dlvyKb7c5+kv7gckBiFvYO2i1uuLE9e4xg7w/lj2A8K70WiC+FEDVv77njkZnhW1 Kn9X2vnu6AQMcBk3waghc0KrbbG9IjnEzB9GuEy1wAm4cq9zDaCaGYBBytu9WXL0 zZPtPeAlj7ziBjNL9JLrFjCnLddjNkj+dWWNP0vS2IPmA3ceFW03fvbHmh3Wk60C yPqcadPIYGmkVe8UCERRTtRmlyenzxgzshpa/uqQIAMzdogs09JSg3naOD3szp5o jaeeud/MR9hfXsWtZ0See6X6BqKI7Gi2sF+hBE8LMLnD8tqT0Pqp1UK3yGW2eO18 0ml2vbJDm+mRQ7rk4YWssNQgHiU52pMbHVIFaV8clSnKgNNCWrAktgwnfQK3/yzV o7eibC1Ry+Q= =ajEq -----END PGP SIGNATURE----- Sat Sep 7 10:54:31 UTC 2024 I: Checking whether the package is not for us Sat Sep 7 10:54:31 UTC 2024 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Sat Sep 7 10:54:31 UTC 2024 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Sat Sep 7 10:55:04 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 6 22:54:36 -12 2024 I: pbuilder-time-stamp: 1725706476 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bowtie2_2.5.4-1.dsc] I: copying [./bowtie2_2.5.4.orig.tar.gz] I: copying [./bowtie2_2.5.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 7 14:07:19 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bowtie2_2.5.4-1.dsc: no acceptable signature found dpkg-source: info: extracting bowtie2 in bowtie2-2.5.4 dpkg-source: info: unpacking bowtie2_2.5.4.orig.tar.gz dpkg-source: info: unpacking bowtie2_2.5.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying wrong-interpreter-path.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying skip_test_requiring_non-free_libmath-random-perl.patch dpkg-source: info: applying do-not-rebuild-during-test.patch dpkg-source: info: applying simde dpkg-source: info: applying correct_64bit_test dpkg-source: info: applying no_sanity dpkg-source: info: applying use-source-date-epoch-in-Makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2747/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7cbb7b9bb8a948679d67c7d3de948184' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2747' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UXhfGhSl/pbuilderrc_raIa --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UXhfGhSl/b1 --logfile b1/build.log bowtie2_2.5.4-1.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-25-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2747/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, help2man, pandoc, libtbb-dev, python3, liblocal-lib-perl, libtest-deep-perl, libclone-perl, libfile-which-perl, zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19491 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on liblocal-lib-perl; however: Package liblocal-lib-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-deep-perl; however: Package libtest-deep-perl is not installed. pbuilder-satisfydepends-dummy depends on libclone-perl; however: Package libclone-perl is not installed. pbuilder-satisfydepends-dummy depends on libfile-which-perl; however: Package libfile-which-perl is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libgssapi-krb5-2{a} libhwloc15{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblocal-lib-perl{a} liblocale-gettext-perl{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsimde-dev{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtest-deep-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libltdl-dev libmail-sendmail-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 57.0 MB of archives. After unpacking 327 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libgssapi-krb5-2{a} libhwloc15{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblocal-lib-perl{a} liblocale-gettext-perl{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsimde-dev{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtest-deep-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libltdl-dev libmail-sendmail-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 57.0 MB of archives. After unpacking 327 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2747 and its subdirectories Sat Sep 7 10:55:07 UTC 2024 W: No second build log, what happened? Sat Sep 7 10:55:07 UTC 2024 W: Downloading the build dependencies failed Sat Sep 7 10:55:07 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Sep 7 10:55:07 UTC 2024 W: Network problems are automatically rescheduled after some hours.