Thu Nov 7 21:31:51 UTC 2024 I: starting to build vsearch/trixie/arm64 on jenkins on '2024-11-07 21:31' Thu Nov 7 21:31:51 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/62776/console.log Thu Nov 7 21:31:51 UTC 2024 I: Downloading source for trixie/vsearch=2.29.1-1 --2024-11-07 21:31:51-- http://deb.debian.org/debian/pool/main/v/vsearch/vsearch_2.29.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2354 (2.3K) [text/prs.lines.tag] Saving to: ‘vsearch_2.29.1-1.dsc’ 0K .. 100% 265M=0s 2024-11-07 21:31:51 (265 MB/s) - ‘vsearch_2.29.1-1.dsc’ saved [2354/2354] Thu Nov 7 21:31:51 UTC 2024 I: vsearch_2.29.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: any all Version: 2.29.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, zlib1g-dev, libbz2-dev, libtext-markdown-perl, ghostscript, libsimde-dev [!amd64 !arm64 !ppc64el], time Package-List: vsearch deb science optional arch=any vsearch-examples deb science optional arch=all Checksums-Sha1: ed44791670c5cc0086e4580d36b398f3d182006f 283766 vsearch_2.29.1.orig.tar.gz fea41c0d18ab39502d8fa07b969584ae84070350 1631864 vsearch_2.29.1-1.debian.tar.xz Checksums-Sha256: a36f175c4eddf1c7ce7030561de52c20d36ddc5ed1f498ee4853c6808f7375bb 283766 vsearch_2.29.1.orig.tar.gz fb39b1d08c34efacb9aa0b4d7d2b0d5948fb36f9c481d8bbdd1af3f906cdbbd4 1631864 vsearch_2.29.1-1.debian.tar.xz Files: 2c735ab2a3ffa9ccc59eb9d0acaa2c07 283766 vsearch_2.29.1.orig.tar.gz 0435d199638944182c18eecb7bc06d4b 1631864 vsearch_2.29.1-1.debian.tar.xz Dgit: 296414215767aa1326aa6305f0be227b9b7ab6eb debian archive/debian/2.29.1-1 https://git.dgit.debian.org/vsearch -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcmS9EUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpEIg/7BTgyvntYDtZasn/t+Hf/UxnYQRaH 417uvGFivkygvjvsLXOyGP0bD+FD7NL/BNz98Ysi74wB9XTnVc1eH41TnKgB+zTj ltDxoOsbEiMOjhUIEvE/DKeRyPMELlLWXw4ZnOU/XE7l3RiMpsHn+H67L5f4s9zU MYF6STJMGGwoqIk4wcoPTO8W8+kTtHlU/rNIsCh2tWPLks8DbfDyVxUm8QV8fudp g+rF4l+z77oEUoGDuiDK+Imxg5iCYUxjxvE0FOODqsZgUcctqVCoC7bxRCwNh12Z 1Zts3IMpfI7y29J5+B0mDuDx1tQ3R0/ijwBRbVikEkzqcUpXn8PSWwPmrGKpu+KO jWZQyjZY0UwNReXLoOkaBDiUvTOA3FKwvzogYVpHadkGZzgDNixgAH4JBEnUpOqC IP4JL47m2fWR82woBywPLsf+Rxsp4UGCIskfrJbauuf+BBdmTGMeRozRytdWXUax QkALn2iRe60wlUgiyQdF1VoktCr6IowxxoDHtVzJJBFfWaWTCT0c35jHJqzVlnUs JQ5+li1mQcH0QVSIdU8enL/4GVJtrxzivcWtbJOz+eoznsH7J7EE3jo3cqqJlYs8 4NwyeNMm3cTyJr+UKn/x4v1ghVJRxcBnZCj+b/rbt1BBY0c9Ku1yxfZhlnkxb59o hYfmqRzwDkM/C9A= =53Qg -----END PGP SIGNATURE----- Thu Nov 7 21:31:51 UTC 2024 I: Checking whether the package is not for us Thu Nov 7 21:31:51 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu Nov 7 21:31:51 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu Nov 7 21:34:44 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 10 15:54:54 -12 2025 I: pbuilder-time-stamp: 1765425294 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.29.1-1.dsc] I: copying [./vsearch_2.29.1.orig.tar.gz] I: copying [./vsearch_2.29.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 2 15:57:05 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vsearch_2.29.1-1.dsc: no acceptable signature found dpkg-source: info: extracting vsearch in vsearch-2.29.1 dpkg-source: info: unpacking vsearch_2.29.1.orig.tar.gz dpkg-source: info: unpacking vsearch_2.29.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3055539/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='b302b6e4567248c0bca1ef3919b2d345' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3055539' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/pbuilderrc_7U1a --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/b1 --logfile b1/build.log vsearch_2.29.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3055539/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, zlib1g-dev, libbz2-dev, libtext-markdown-perl, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libtext-markdown-perl; however: Package libtext-markdown-perl is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16t64{a} libsharpyuv0{a} libsm6{a} libtext-markdown-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxt6t64{a} m4{a} man-db{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} ucf{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 43.0 MB of archives. After unpacking 154 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 14 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b1 [22.5 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 41 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libgs-common all 10.04.0~dfsg-1 [148 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libgs10-common all 10.04.0~dfsg-1 [474 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libavahi-common-data arm64 0.8-13+b3 [112 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libavahi-common3 arm64 0.8-13+b3 [42.3 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libdbus-1-3 arm64 1.14.10-6 [196 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libavahi-client3 arm64 0.8-13+b3 [46.0 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libcups2t64 arm64 2.4.10-2 [235 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libidn12 arm64 1.42-2+b1 [80.2 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libijs-0.35 arm64 0.35-15.1+b2 [14.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b2 [24.4 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgs10 arm64 10.04.0~dfsg-1 [2351 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 ghostscript arm64 10.04.0~dfsg-1 [50.5 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libtext-markdown-perl all 1.000031-5 [31.4 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 time arm64 1.9-0.2+b1 [48.1 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 43.0 MB in 0s (92.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../00-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... 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Setting up libicu72:arm64 (72.1-5+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:arm64 (0.2.3) ... Setting up libijs-0.35:arm64 (0.35-15.1+b2) ... Setting up libdebhelper-perl (13.20) ... Setting up libgs-common (10.04.0~dfsg-1) ... Setting up libbrotli1:arm64 (1.1.0-2+b5) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjbig2dec0:arm64 (0.20-1+b3) ... Setting up libavahi-common-data:arm64 (0.8-13+b3) ... Setting up libdbus-1-3:arm64 (1.14.10-6) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libidn12:arm64 (1.42-2+b1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libavahi-common3:arm64 (0.8-13+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libavahi-client3:arm64 (0.8-13+b3) ... Setting up libpaper1:arm64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up libcups2t64:arm64 (2.4.10-2) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libgs10-common (10.04.0~dfsg-1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libgs10:arm64 (10.04.0~dfsg-1) ... Setting up ghostscript (10.04.0~dfsg-1) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/vsearch-2.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vsearch_2.29.1-1_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.29.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f *.out make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:103: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for getopt.h... yes checking for fcntl.h... yes checking for float.h... yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for bzlib.h... yes checking for zlib.h... yes checking for ps2pdf... yes checking for windows.h... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' make all-recursive make[2]: Entering directory '/build/reproducible-path/vsearch-2.29.1' Making all in src make[3]: Entering directory '/build/reproducible-path/vsearch-2.29.1/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o derep.o derep.cc align_simd.cc: In function 'void search16(s16info_s*, unsigned int, unsigned int*, CELL*, short unsigned int*, short unsigned int*, short unsigned int*, short unsigned int*, char**)': align_simd.cc:148:69: warning: ISO C++ forbids compound-literals [-Wpedantic] 148 | #define v_init(a,b,c,d,e,f,g,h) (const VECTOR_SHORT){a,b,c,d,e,f,g,h} | ^ align_simd.cc:1355:8: note: in expansion of macro 'v_init' 1355 | T0 = v_init(-1, 0, 0, 0, 0, 0, 0, 0); | ^~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o derep_prefix.o derep_prefix.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o derep_smallmem.o derep_smallmem.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fasta2fastq.o fasta2fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastq_chars.o fastq_chars.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastq_join.o fastq_join.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o orient.o orient.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o rereplicate.o rereplicate.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o search_exact.o search_exact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sff_convert.o sff_convert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o tax.o tax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -Wno-sign-compare -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o cpu.o cpu.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o utils/maps.o utils/maps.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o utils/seqcmp.o utils/seqcmp.cc rm -f libcityhash.a ar cru libcityhash.a libcityhash_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu.a ar cru libcpu.a cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu.a g++ -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.29.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o derep_prefix.o derep_smallmem.o dynlibs.o eestats.o fasta2fastq.o fasta.o fastq.o fastq_chars.o fastq_join.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o orient.o otutable.o rereplicate.o results.o search.o searchcore.o search_exact.o sff_convert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o tax.o udb.o unique.o userfields.o util.o utils/maps.o utils/seqcmp.o vsearch.o libcityhash.a libcpu.a -ldl -lpthread cut.cc:74:8: warning: type 'struct statistics' violates the C++ One Definition Rule [-Wodr] 74 | struct statistics { | ^ fastq_chars.cc:79:8: note: a different type is defined in another translation unit 79 | struct statistics { | ^ cut.cc:75:7: note: the first difference of corresponding definitions is field 'fragment_no' 75 | int fragment_no = 0; | ^ fastq_chars.cc:80:25: note: a field with different name is defined in another translation unit 80 | std::vector sequence_chars; | ^ lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[3]: Leaving directory '/build/reproducible-path/vsearch-2.29.1/src' Making all in man make[3]: Entering directory '/build/reproducible-path/vsearch-2.29.1/man' sed -e 's/\\-/-/g' vsearch.1 | \ iconv -f UTF-8 -t ISO-8859-1 | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf troff::3606: warning [p 41, 6.7i]: cannot adjust line make[3]: Leaving directory '/build/reproducible-path/vsearch-2.29.1/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.29.1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/vsearch-2.29.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' Making install in src make[2]: Entering directory '/build/reproducible-path/vsearch-2.29.1/src' make[3]: Entering directory '/build/reproducible-path/vsearch-2.29.1/src' /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.29.1/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c ../bin/vsearch '/build/reproducible-path/vsearch-2.29.1/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.29.1/src' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.29.1/src' Making install in man make[2]: Entering directory '/build/reproducible-path/vsearch-2.29.1/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.29.1/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.29.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.29.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/reproducible-path/vsearch-2.29.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch.1 '/build/reproducible-path/vsearch-2.29.1/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.29.1/man' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.29.1/man' make[2]: Entering directory '/build/reproducible-path/vsearch-2.29.1' make[3]: Entering directory '/build/reproducible-path/vsearch-2.29.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' # tweak path to vsearch binary in test scripts if [ -d test ] ; then \ mkdir -p /build/reproducible-path/vsearch-2.29.1/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/reproducible-path/vsearch-2.29.1/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/vsearch-2.29.1' dpkg-query: no packages found matching libsimde-dev dh_gencontrol -- -Vsimde:Built-Using="" dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/vsearch-2.29.1' dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.29.1-1_all.deb'. dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.29.1-1_arm64.deb'. dpkg-deb: building package 'vsearch' in '../vsearch_2.29.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../vsearch_2.29.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../vsearch_2.29.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3055539 and its subdirectories I: Current time: Wed Dec 10 15:57:40 -12 2025 I: pbuilder-time-stamp: 1765425460 Thu Nov 7 21:34:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Nov 7 21:34:45 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Nov 7 21:37:35 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Nov 7 21:37:36 UTC 2024 I: vsearch_2.29.1-1_arm64.changes: Format: 1.8 Date: Sat, 02 Nov 2024 16:40:05 +0100 Source: vsearch Binary: vsearch vsearch-dbgsym vsearch-examples Architecture: arm64 all Version: 2.29.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: vsearch - tool for processing metagenomic sequences vsearch-examples - Test Data for vsearch tool for processing metagenomic sequences Changes: vsearch (2.29.1-1) unstable; urgency=medium . * New upstream version 2.29.1 * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 9b2c8e4c625b815bb0fdb9985078ac526bb509ff 1119752 vsearch-dbgsym_2.29.1-1_arm64.deb d73765966cf37db23610413ae619ffb6ef113839 3479516 vsearch-examples_2.29.1-1_all.deb 7957244daaa1a68f65fe2cceedc24af0c3041fc8 7061 vsearch_2.29.1-1_arm64.buildinfo 45d3601a916b1d7433456a4f55da48e13f37a50a 410220 vsearch_2.29.1-1_arm64.deb Checksums-Sha256: 7bc24d2caec1b5bd73a57a67787a5874d5530d9184a3efc34fce133fd31e5b28 1119752 vsearch-dbgsym_2.29.1-1_arm64.deb 9c1fcdc6e28de1dc1a213e8d326461c68d1c90dcc75361afb33064aed2fb26fc 3479516 vsearch-examples_2.29.1-1_all.deb 744c761c4a6d272f159c40478bca652dc66f98faf6ea7aa1c862a61c26166a5c 7061 vsearch_2.29.1-1_arm64.buildinfo f0c9635d34a33f6aef5d72cca8ce7822b6a8155004a93a43afb13990872c68a4 410220 vsearch_2.29.1-1_arm64.deb Files: 812c4ee6c7a0fef2c25e76a95745df13 1119752 debug optional vsearch-dbgsym_2.29.1-1_arm64.deb 0ec3b30a77411eb1ccae34674c4727a5 3479516 science optional vsearch-examples_2.29.1-1_all.deb 72bd966ea46da12d2b89d7c4f2401183 7061 science optional vsearch_2.29.1-1_arm64.buildinfo 1ef2f86660dcf6e82dc3b5c0eda52be2 410220 science optional vsearch_2.29.1-1_arm64.deb Thu Nov 7 21:37:37 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_3-62776.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/vsearch_2.29.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/vsearch_2.29.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/vsearch_2.29.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/b1/vsearch_2.29.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4g6jJtxm/b2/vsearch_2.29.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.454s) 0.454s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.070s) 0.070s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 808ms CPU time consumed: 808ms Thu Nov 7 21:37:39 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 7 21:37:39 UTC 2024 I: vsearch from trixie built successfully and reproducibly on arm64. Thu Nov 7 21:37:40 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 7 21:37:40 UTC 2024 I: Submitting 8.0K b1/vsearch_2.29.1-1_arm64.buildinfo.asc Thu Nov 7 21:37:41 UTC 2024 I: Submitting 8.0K b2/vsearch_2.29.1-1_arm64.buildinfo.asc Thu Nov 7 21:37:42 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 7 21:37:42 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 7 21:37:42 UTC 2024 I: Removing signed vsearch_2.29.1-1_arm64.buildinfo.asc files: removed './b1/vsearch_2.29.1-1_arm64.buildinfo.asc' removed './b2/vsearch_2.29.1-1_arm64.buildinfo.asc'