Thu Jul 4 07:59:43 UTC 2024 I: starting to build unifrac/trixie/arm64 on jenkins on '2024-07-04 07:59' Thu Jul 4 07:59:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/24659/console.log Thu Jul 4 07:59:43 UTC 2024 I: Downloading source for trixie/unifrac=1.3-3 --2024-07-04 07:59:43-- http://deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.3-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2232 (2.2K) [text/prs.lines.tag] Saving to: ‘unifrac_1.3-3.dsc’ 0K .. 100% 279M=0s 2024-07-04 07:59:43 (279 MB/s) - ‘unifrac_1.3-3.dsc’ saved [2232/2232] Thu Jul 4 07:59:43 UTC 2024 I: unifrac_1.3-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unifrac Binary: python3-unifrac Architecture: any Version: 1.3-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biocore/unifrac Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/unifrac Vcs-Git: https://salsa.debian.org/med-team/unifrac.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1) , python3-iow , libssu-dev (>= 1.4-2~) Package-List: python3-unifrac deb python optional arch=any Checksums-Sha1: ce9c8b95b5567503d21902912ac222f1e7f27b28 65918 unifrac_1.3.orig.tar.gz 97671477e9448ae21822a5f8ae3e28de0f6a0bd6 8092 unifrac_1.3-3.debian.tar.xz Checksums-Sha256: e8cc37c3d5aaa31494c218df8a336eae135049d6840023d057da4fda8c4a4377 65918 unifrac_1.3.orig.tar.gz 89a10d02fa04ff92f4eafb9f7ce0485a123b90b648be9193fb7264cca74e7f20 8092 unifrac_1.3-3.debian.tar.xz Files: 5b9f4c8ff4caf738771a7c467ce6e043 65918 unifrac_1.3.orig.tar.gz 9d17a108516489b8785eb5715158da23 8092 unifrac_1.3-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmaALZkACgkQPCZ2P2xn 5uI3fw/+IBvw0+uMb+m3HoHdY7FHlylDiaVIhjrKEErYMWf/h77aLPRN20ruLw4F eTpBcjMrlok832PYT39HISTFlOgoCgvKwYnoIEbQhC1IECkYfP6b2MOPo7g6AfcV RauIblqdN0bqanOkiAQ55GvKDpe2YU+D5rviTBLlv4Pd5rcYvg9EFebKo/6d4lAg dL8zuV9g6m4GDNNytOOHnk9RLYkTaeCW/3uSDlDxgdBqAc+0DNooVJMAwBNOwBfH qYDoss/WI6dxXPrsvUsmTdNPYGhn0KYXYzBs74VbHFEQuaNhdcoGgFdXVxIIXsmr qTeJsE/US0S4SLgzxQ8uvGKd6mbeUkL7sEfK0fCKyLsFQwvw/Oi7sBmFbDir1dc4 TQgM9pvH/gcy+GWxiWeO2Ds+ZytQYUZl503gROwKrHuekLkempzOYBy7mJRiL+C9 Qfc55+zdo/N8QRSzkNlu/znCSlwcTCNTnlqDCC/ZI8Yz9uJHqW6FrkBBzEFzb8Xl gvY5/MEDvMkiZm6IaPSj930O2HTnGvJ1dYADQq3X4XodA8m3LNQi4jgIrjL+awx1 LatUr8vxLVPR36pGMbp0bCZ+vl2eO6MMJOn2z7Z6k1Cakd65sw1dX52Z9OIHpWQs biV6Ax/5LAV0IVqnnYm02FiSXLIUshwwO0HcFRVZQ+C/OyVI+W0= =ffJt -----END PGP SIGNATURE----- Thu Jul 4 07:59:43 UTC 2024 I: Checking whether the package is not for us Thu Jul 4 07:59:43 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Jul 4 07:59:43 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Jul 4 08:04:00 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 6 02:22:45 -12 2025 I: pbuilder-time-stamp: 1754490165 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-3.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jun 29 15:51:53 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-3.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3815852/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='531866671f8b44238b1c8b91a67090c7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3815852' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/pbuilderrc_BNSe --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/b1 --logfile b1/build.log unifrac_1.3-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-22-cloud-arm64 #1 SMP Debian 6.1.94-1 (2024-06-21) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3815852/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1), python3-iow, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.6.1); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsz2{a} libtmglib3{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-iow{a} python3-lib2to3{a} python3-minimal{a} python3-natsort{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-skbio{a} python3-tz{a} python3-urllib3{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables wget 0 packages upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After unpacking 507 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.4-1 [804 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.4-1 [1918 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.2-1 [1327 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-1 [197 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-9 [95.2 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-1 [723 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.10+dfsg-5 [3120 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.16 [88.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 40 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-1 [1526 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.16 [891 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dh-exec arm64 0.30 [25.5 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-3.3 [23.4 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.2-1 [31.8 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.2-1 [80.4 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.2-1 [307 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.2-1 [125 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-1 [173 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.62.1-1 [71.2 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.8.0-1 [532 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.3 [1035 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.3 [119 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-3.3 [88.0 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.3 [60.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-3.3 [38.5 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-3.3 [21.2 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.2.2-1 [3090 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-3.3 [2689 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-9 [150 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtmglib3 arm64 3.12.0-3 [95.9 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 liblapacke arm64 3.12.0-3 [336 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b1 [10.3 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 100 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.4-1 [1886 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.4-1 [1950 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.4-1 [4734 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.11.8-1 [1072 B] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssu0 arm64 1.4-3+b2 [133 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libssu-dev arm64 1.4-3+b2 [9872 B] Get: 106 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-14+b1 [19.6 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.4-1 [664 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.11.8-1 [1056 B] Get: 109 http://deb.debian.org/debian trixie/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.4-1 [499 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.11.8-1 [1072 B] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [4221 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.11.0-2 [1441 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.11.0-2 [14.5 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.1.7-1 [94.0 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [6609 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.12.0-2 [18.8 MB] Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-biom-format arm64 2.1.16-1 [173 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2024.6.2-1 [157 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3-hdmedians arm64 0.14.2-5.1 [142 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.6-2.1 [38.6 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-skbio arm64 0.6.1-2 [1415 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 python3-iow arm64 1.0.6-5 [526 kB] Fetched 102 MB in 1s (106 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20118 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21110 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../001-libpython3.12-minimal_3.12.4-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.4-1_arm64.deb ... Unpacking python3.12-minimal (3.12.4-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.2.2-1_arm64.deb ... Unpacking openssl (3.2.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-1_arm64.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.1-9_arm64.deb ... Unpacking bsdextrautils (2.40.1-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../013-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.12.1-2_arm64.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-1_all.deb ... Unpacking autopoint (0.22.5-1) ... Selecting previously unselected package cython3. Preparing to unpack .../020-cython3_3.0.10+dfsg-5_arm64.deb ... Unpacking cython3 (3.0.10+dfsg-5) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.16_all.deb ... Unpacking libdebhelper-perl (13.16) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../027-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../029-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-1_arm64.deb ... Unpacking gettext (0.22.5-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.16_all.deb ... Unpacking debhelper (13.16) ... Selecting previously unselected package dh-exec. Preparing to unpack .../035-dh-exec_0.30_arm64.deb ... Unpacking dh-exec (0.30) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../036-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../037-python3-lib2to3_3.12.3-3.1_all.deb ... Unpacking python3-lib2to3 (3.12.3-3.1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../038-python3-distutils_3.12.3-3.1_all.deb ... Unpacking python3-distutils (3.12.3-3.1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../039-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../040-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../041-hdf5-helpers_1.10.10+repack-3.3_arm64.deb ... Unpacking hdf5-helpers (1.10.10+repack-3.3) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../042-libaec0_1.1.3-1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../043-libsz2_1.1.3-1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../044-libaec-dev_1.1.3-1_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.3-1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../045-libblas3_3.12.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-3) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../046-libbrotli1_1.1.0-2+b3_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../047-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../048-libkrb5support0_1.21.2-1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../049-libk5crypto3_1.21.2-1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.2-1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../050-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../051-libkrb5-3_1.21.2-1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.2-1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../052-libgssapi-krb5-2_1.21.2-1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.2-1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../053-libsasl2-modules-db_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../054-libsasl2-2_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:arm64. 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Preparing to unpack .../122-python3-iow_1.0.6-5_arm64.deb ... Unpacking python3-iow (1.0.6-5) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.1-9) ... Setting up hdf5-helpers (1.10.10+repack-3.3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libpython3.12-minimal:arm64 (3.12.4-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.62.1-1) ... Setting up gettext-base (0.22.5-1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libaec0:arm64 (1.1.3-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libkrb5support0:arm64 (1.21.2-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Aug 6 14:23:35 UTC 2025. Universal Time is now: Wed Aug 6 14:23:35 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:arm64 (3.6-4+b1) ... Setting up libssl-dev:arm64 (3.2.2-1) ... Setting up autopoint (0.22.5-1) ... Setting up libk5crypto3:arm64 (1.21.2-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.2-1) ... Setting up libssh2-1t64:arm64 (1.11.0-5) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.2.2-1) ... Setting up libssw0:arm64 (1.1-14+b1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libsz2:arm64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.4-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-1) ... Setting up libtool (2.4.7-7) ... Setting up libaec-dev:arm64 (1.1.3-1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtmglib3:arm64 (3.12.0-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.2-1) ... Setting up libjs-sphinxdoc (7.2.6-9) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up liblapacke:arm64 (3.12.0-3) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.4-1) ... Setting up libcurl4t64:arm64 (8.8.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up python3.12 (3.12.4-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:arm64 (3.12.4-1) ... Setting up libcurl4-openssl-dev:arm64 (8.8.0-1) ... Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.3) ... Setting up debhelper (13.16) ... Setting up python3 (3.11.8-1) ... Setting up dh-exec (0.30) ... Setting up libpython3.12-dev:arm64 (3.12.4-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-certifi (2024.6.2-1) ... Setting up libpython3-all-dev:arm64 (3.11.8-1) ... Setting up python3-idna (3.6-2.1) ... Setting up python3.12-dev (3.12.4-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.3) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-setuptools (68.1.2-2) ... Setting up python3-colorama (0.4.6-4) ... Setting up libssu0:arm64 (1.4-3+b2) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.3) ... Setting up python3-all (3.11.8-1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-2) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-hdmedians (0.14.2-5.1) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up python3-scipy (1.12.0-2) ... Setting up libssu-dev:arm64 (1.4-3+b2) ... Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... Setting up python3-h5py-serial (3.11.0-2) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-h5py (3.11.0-2) ... Setting up python3-biom-format (2.1.16-1) ... Setting up python3-skbio (0.6.1-2) ... Setting up python3-iow (1.0.6-5) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../unifrac_1.3-3_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf unifrac.egg-info unifrac/_api.c make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/unifrac aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c unifrac/_api.c -o build/temp.linux-aarch64-cpython-312/unifrac/_api.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_result_to_skbio_distance_matrix': unifrac/_api.c:23770:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 23770 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_14; __pyx_t_7+=1) { | ^ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27151:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27151 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/unifrac/_api.o -L/usr/lib/aarch64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_api.cpython-312-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/unifrac aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c unifrac/_api.c -o build/temp.linux-aarch64-cpython-311/unifrac/_api.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_result_to_skbio_distance_matrix': unifrac/_api.c:23770:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 23770 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_14; __pyx_t_7+=1) { | ^ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27151:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27151 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/unifrac/_api.o -L/usr/lib/aarch64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_api.cpython-311-aarch64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build; python3.12 -m unittest discover -v test_ssu_table_not_subset_tree (unifrac.tests.test_api.EdgeCasesTests.test_ssu_table_not_subset_tree) ... ok test_unweighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_extra_tips) ... ok test_unweighted_minimal_trees (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees) ... ok test_unweighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_otus_out_of_order) ... ok test_unweighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_root_not_observed) ... ok test_unweighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac) ... ok test_unweighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_identity) ... ok test_unweighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_non_overlapping) ... ok test_unweighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_symmetry) ... ok test_weighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_weighted_extra_tips) ... ok test_weighted_normalized_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_normalized_root_not_observed) ... ok test_weighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_weighted_otus_out_of_order) ... ok test_weighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_root_not_observed) ... ok test_weighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac) ... ok test_weighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity) ... ok test_weighted_unifrac_identity_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity_normalized) ... ok test_weighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping) ... ok test_weighted_unifrac_non_overlapping_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping_normalized) ... ok test_weighted_unifrac_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_normalized) ... ok test_weighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry) ... ok test_weighted_unifrac_symmetry_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry_normalized) ... ok test_faith_pd (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_all_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_all_observed) ... ok test_faith_pd_biom_table_empty (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_biom_table_empty) ... ok test_faith_pd_extra_tips (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_extra_tips) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_invalid_input (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_invalid_input) ... ok test_faith_pd_minimal (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_minimal) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_none_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_none_observed) ... WARNING: All samples had zero counts. Forcing zero result. ok test_faith_pd_root_not_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_root_not_observed) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_faith_pd_series_name (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_series_name) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_table_not_subset_tree (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_table_not_subset_tree) ... ok test_faith_pd_zero_branches_omitted (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_zero_branches_omitted) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_meta_unifrac (unifrac.tests.test_api.UnifracAPITests.test_meta_unifrac) ... ok test_ssu_bad_method (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_method) ... ok test_ssu_bad_table (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_table) ... ok test_ssu_bad_tree (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_tree) ... ok test_unweighted_fp32_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp32_inmem) ... ok test_unweighted_fp64_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp64_inmem) ... ok test_unweighted_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_inmem) ... ok test_unweighted_root_eval_issue_46 (unifrac.tests.test_api.UnifracAPITests.test_unweighted_root_eval_issue_46) ... ok test_meta_unifrac (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac) meta_unifrac should give correct result on sample trees ... ok test_meta_unifrac_alpha_not_generalized (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_alpha_not_generalized) ... ok test_meta_unifrac_bad_consolidation (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_consolidation) ... ok test_meta_unifrac_bad_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_method) ... ok test_meta_unifrac_missing (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_missing) ... ok test_meta_unifrac_no_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_no_method) ... ok test_meta_unifrac_unbalanced (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced) ... ok test_meta_unifrac_unbalanced_weights (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced_weights) ... ok test_meta_validation (unifrac.tests.test_methods.StateUnifracTests.test_meta_validation) ... ok ---------------------------------------------------------------------- Ran 49 tests in 31.318s OK I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build; python3.11 -m unittest discover -v test_ssu_table_not_subset_tree (unifrac.tests.test_api.EdgeCasesTests.test_ssu_table_not_subset_tree) ... ok test_unweighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_extra_tips) ... ok test_unweighted_minimal_trees (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees) ... ok test_unweighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_otus_out_of_order) ... ok test_unweighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_root_not_observed) ... ok test_unweighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac) ... ok test_unweighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_identity) ... ok test_unweighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_non_overlapping) ... ok test_unweighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_unweighted_unifrac_symmetry) ... ok test_weighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests.test_weighted_extra_tips) ... ok test_weighted_normalized_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_normalized_root_not_observed) ... ok test_weighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests.test_weighted_otus_out_of_order) ... ok test_weighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests.test_weighted_root_not_observed) ... ok test_weighted_unifrac (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac) ... ok test_weighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity) ... ok test_weighted_unifrac_identity_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_identity_normalized) ... ok test_weighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping) ... ok test_weighted_unifrac_non_overlapping_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_non_overlapping_normalized) ... ok test_weighted_unifrac_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_normalized) ... ok test_weighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry) ... ok test_weighted_unifrac_symmetry_normalized (unifrac.tests.test_api.EdgeCasesTests.test_weighted_unifrac_symmetry_normalized) ... ok test_faith_pd (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_all_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_all_observed) ... ok test_faith_pd_biom_table_empty (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_biom_table_empty) ... ok test_faith_pd_extra_tips (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_extra_tips) ... WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_invalid_input (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_invalid_input) ... ok test_faith_pd_minimal (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_minimal) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_none_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_none_observed) ... WARNING: All samples had zero counts. Forcing zero result. ok test_faith_pd_root_not_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_root_not_observed) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_faith_pd_series_name (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_series_name) ... WARNING: Some samples had zero counts and were filtered out. ok test_faith_pd_table_not_subset_tree (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_table_not_subset_tree) ... ok test_faith_pd_zero_branches_omitted (unifrac.tests.test_api.FaithPDEdgeCasesTests.test_faith_pd_zero_branches_omitted) ... WARNING: Some samples had zero counts and were filtered out. /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) ok test_meta_unifrac (unifrac.tests.test_api.UnifracAPITests.test_meta_unifrac) ... ok test_ssu_bad_method (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_method) ... ok test_ssu_bad_table (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_table) ... ok test_ssu_bad_tree (unifrac.tests.test_api.UnifracAPITests.test_ssu_bad_tree) ... ok test_unweighted_fp32_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp32_inmem) ... ok test_unweighted_fp64_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_fp64_inmem) ... ok test_unweighted_inmem (unifrac.tests.test_api.UnifracAPITests.test_unweighted_inmem) ... ok test_unweighted_root_eval_issue_46 (unifrac.tests.test_api.UnifracAPITests.test_unweighted_root_eval_issue_46) ... ok test_meta_unifrac (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac) meta_unifrac should give correct result on sample trees ... ok test_meta_unifrac_alpha_not_generalized (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_alpha_not_generalized) ... ok test_meta_unifrac_bad_consolidation (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_consolidation) ... ok test_meta_unifrac_bad_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_bad_method) ... ok test_meta_unifrac_missing (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_missing) ... ok test_meta_unifrac_no_method (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_no_method) ... ok test_meta_unifrac_unbalanced (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced) ... ok test_meta_unifrac_unbalanced_weights (unifrac.tests.test_methods.StateUnifracTests.test_meta_unifrac_unbalanced_weights) ... ok test_meta_validation (unifrac.tests.test_methods.StateUnifracTests.test_meta_validation) ... ok ---------------------------------------------------------------------- Ran 49 tests in 31.948s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12 creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/_meta.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/_methods.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_api.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.12_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/tests/test_api.py to test_api.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/_meta.py to _meta.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/_methods.py to _methods.cpython-312.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.12/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11 creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__pycache__/_meta.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__pycache__/_methods.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_api.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.11_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/tests/test_api.py to test_api.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/_meta.py to _meta.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/_methods.py to _methods.cpython-311.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.11/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_python3 dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-3_arm64.deb'. dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-3_arm64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3815852 and its subdirectories I: Current time: Wed Aug 6 02:26:59 -12 2025 I: pbuilder-time-stamp: 1754490419 Thu Jul 4 08:04:01 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Jul 4 08:04:01 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Jul 4 08:08:11 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Jul 4 08:08:12 UTC 2024 I: unifrac_1.3-3_arm64.changes: Format: 1.8 Date: Sat, 29 Jun 2024 17:49:54 +0200 Source: unifrac Binary: python3-unifrac python3-unifrac-dbgsym Architecture: arm64 Version: 1.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-unifrac - high-performance phylogenetic diversity calculations Changes: unifrac (1.3-3) unstable; urgency=medium . * Team upload. * Release to unstable. Checksums-Sha1: e62d7be82472aff40fc494812a8d1d4f86dc119c 959272 python3-unifrac-dbgsym_1.3-3_arm64.deb 55ccf3de3fdda8819c0700010812a0a552108bbc 180040 python3-unifrac_1.3-3_arm64.deb 1c7b30feb5d6c64681da2c577eefad7cfc7eb2fa 8609 unifrac_1.3-3_arm64.buildinfo Checksums-Sha256: 3b68989c64a8feafc9086c75a634324380f5ce235e446c95565e59b188edec4b 959272 python3-unifrac-dbgsym_1.3-3_arm64.deb 7af3264c3644166403188e99bc11a82c80746a2ee05eaa26ffbd6538e5ec06ac 180040 python3-unifrac_1.3-3_arm64.deb dbad95200341f4dc1ebe817ea3e9450e4a6c645e7c5a4fd9135b85a5d23750d4 8609 unifrac_1.3-3_arm64.buildinfo Files: b45e65f88bf9419659edcacc78fd39a9 959272 debug optional python3-unifrac-dbgsym_1.3-3_arm64.deb e986081266950069309dc5cd13625bcd 180040 python optional python3-unifrac_1.3-3_arm64.deb f46725eb798735c5a845404a29ffee5d 8609 science optional unifrac_1.3-3_arm64.buildinfo Thu Jul 4 08:08:13 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-24659.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/unifrac_1.3-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/unifrac_1.3-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/unifrac_1.3-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/b1/unifrac_1.3-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gxdgO3aZ/b2/unifrac_1.3-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.409s) 0.409s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 813ms CPU time consumed: 813ms Thu Jul 4 08:08:15 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 4 08:08:15 UTC 2024 I: unifrac from trixie built successfully and reproducibly on arm64. Thu Jul 4 08:08:16 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jul 4 08:08:16 UTC 2024 I: Submitting 12K b1/unifrac_1.3-3_arm64.buildinfo.asc Thu Jul 4 08:08:17 UTC 2024 I: Submitting 12K b2/unifrac_1.3-3_arm64.buildinfo.asc Thu Jul 4 08:08:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 4 08:08:18 UTC 2024 I: Done submitting .buildinfo files. Thu Jul 4 08:08:18 UTC 2024 I: Removing signed unifrac_1.3-3_arm64.buildinfo.asc files: removed './b1/unifrac_1.3-3_arm64.buildinfo.asc' removed './b2/unifrac_1.3-3_arm64.buildinfo.asc'