Fri Jun 21 10:38:55 UTC 2024 I: starting to build trim-galore/trixie/arm64 on jenkins on '2024-06-21 10:38' Fri Jun 21 10:38:55 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/23996/console.log Fri Jun 21 10:38:55 UTC 2024 I: Downloading source for trixie/trim-galore=0.6.10-1 --2024-06-21 10:38:55-- http://deb.debian.org/debian/pool/main/t/trim-galore/trim-galore_0.6.10-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2077 (2.0K) [text/prs.lines.tag] Saving to: ‘trim-galore_0.6.10-1.dsc’ 0K .. 100% 305M=0s 2024-06-21 10:38:55 (305 MB/s) - ‘trim-galore_0.6.10-1.dsc’ saved [2077/2077] Fri Jun 21 10:38:55 UTC 2024 I: trim-galore_0.6.10-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: trim-galore Binary: trim-galore Architecture: all Version: 0.6.10-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/trim-galore Vcs-Git: https://salsa.debian.org/med-team/trim-galore.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13) Package-List: trim-galore deb science optional arch=all Checksums-Sha1: dd1320b1efb03f9ee57bb1ee021746a686e83ec7 26831358 trim-galore_0.6.10.orig.tar.gz f873bbd10ee072e43990e6ad12c2f597614864b4 10796 trim-galore_0.6.10-1.debian.tar.xz Checksums-Sha256: 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 26831358 trim-galore_0.6.10.orig.tar.gz 3977f48b27fe4ec7f21ae363eb22fa618d476d5b78d0826daeb94c20d2741c29 10796 trim-galore_0.6.10-1.debian.tar.xz Files: ce8ea65db052838656fd3d760c17d9f9 26831358 trim-galore_0.6.10.orig.tar.gz c485f4f2566efcfb88ba74802ddc9452 10796 trim-galore_0.6.10-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgEYARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFp7Q//T5CkpDRQmXldC9TnTUPKc+9DsZlKog0p zctsO1n3xQRxHD7BP2nnPpJUdurxrbE/KkugEoRAYeHOpQps3UdBxTJkfVOtRUrt qg8N6okXCm4KIU/HthcuUi2xQFbUQ1rcRAwPsgyI4AWuSkFvvtXPkn83aeRvtaHQ 4y8XbpqOQ8LK9kBIchY5kA0zclNFh9elYMwIga15Z/syw1RgOdoSOIvInqtTuw4k ZfFonCS9vJeEoTWyuYZA3hXb7jAeYgxiXslcNTgwtXinBGJ/8/odEVslh//pzU9C 8aMW1gyEVoWdaW31MAPnWHhjoi6jsmpgk5ARl/GiUKE5BlxuAgDcqDRM1B/EWdRp BmoqNp19sMHBG2y5P9VUK5Vp6XrHvmukmkzUGIgA4EHsfs/wjUzfAgZvmefJoGhK ZyD1znWZJaIhQuljLGFZq9yYNb5LBcNQyofB/VGrkZIKuO1gDtFNhDayqOaT5PyF wZSyeL9rC8GgrYt6XhOxAoCoUqdCa/eprQihYaVhLiRnNjcTWmpXCLaYEkeSkPMy vLHwiQkj477JdAZ4oBzxueIYZztSfNFR+bH1dQzrpl+si3lY80fTChZjB1WfRqw6 0KugDCEM8PjhPyCZoRAZ5akEoNXWtKgrCUZ7QspwHpYxGuWCRIPXFtAHX8KwqdRs tbWxZaTOzcs= =Ix9b -----END PGP SIGNATURE----- Fri Jun 21 10:38:55 UTC 2024 I: Checking whether the package is not for us Fri Jun 21 10:38:55 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Jun 21 10:38:55 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Jun 21 10:39:36 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 20 22:38:58 -12 2024 I: pbuilder-time-stamp: 1718966338 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [trim-galore_0.6.10-1.dsc] I: copying [./trim-galore_0.6.10.orig.tar.gz] I: copying [./trim-galore_0.6.10-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 5 20:28:48 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./trim-galore_0.6.10-1.dsc: no acceptable signature found dpkg-source: info: extracting trim-galore in trim-galore-0.6.10 dpkg-source: info: unpacking trim-galore_0.6.10.orig.tar.gz dpkg-source: info: unpacking trim-galore_0.6.10-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1963879/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a96d8e9bc463473ab67bf5f4eaa83db6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1963879' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/pbuilderrc_HHOE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/b1 --logfile b1/build.log trim-galore_0.6.10-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1963879/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 75.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.23 [24.7 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-8.1 [95.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Fetched 18.7 MB in 0s (103 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.23_all.deb ... Unpacking sensible-utils (0.0.23) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-8.1_arm64.deb ... Unpacking bsdextrautils (2.40.1-8.1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-2_arm64.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-8.1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.23) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/trim-galore-0.6.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../trim-galore_0.6.10-1_source.changes dpkg-buildpackage: info: source package trim-galore dpkg-buildpackage: info: source version 0.6.10-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/trim-galore.substvars debian/files rm -fr -- debian/trim-galore/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/trim-galore.substvars rm -fr -- debian/.debhelper/generated/trim-galore/ debian/trim-galore/ debian/tmp/ dh_auto_install --destdir=debian/trim-galore/ install -m0755 -d /build/reproducible-path/trim-galore-0.6.10/debian/trim-galore dh_install install -m0755 -d debian/trim-galore/usr/bin cp --reflink=auto -a ./trim_galore debian/trim-galore/usr/bin/ dh_installdocs install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore install -p -m0644 debian/copyright debian/trim-galore/usr/share/doc/trim-galore/copyright dh_installchangelogs install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore install -p -m0644 debian/.debhelper/generated/trim-galore/dh_installchangelogs.dch.trimmed debian/trim-galore/usr/share/doc/trim-galore/changelog.Debian install -p -m0644 ./CHANGELOG.md debian/trim-galore/usr/share/doc/trim-galore/changelog debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/trim-galore-0.6.10' dh_installexamples install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/4_seqs_with_Ns.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/clock_10K_R1.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/clock_10K_R2.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/colorspace_file.fastq debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/empty_file.fastq debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_10K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_10K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/illumina_10K_trimmed.fq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/nextera_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/nextera_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K_R1.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K_R2.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/smallRNA_100K_R2.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples cp --reflink=auto -a ./test_files/truncated.fq.gz debian/trim-galore/usr/share/doc/trim-galore/examples rm -rf debian/trim-galore/usr/share/doc/trim-galore/examples/truncated.fq.gz \ debian/trim-galore/usr/share/doc/trim-galore/examples/smallRNA_100K_R2.fastq.gz \ debian/trim-galore/usr/share/doc/trim-galore/examples/*.fastq \ debian/trim-galore/usr/share/doc/trim-galore/examples/*.txt make[1]: Leaving directory '/build/reproducible-path/trim-galore-0.6.10' dh_installman install -m0755 -d debian/trim-galore/usr/share/man/man1/ install -p -m0644 ./debian/trim_galore.1 debian/trim-galore/usr/share/man/man1/trim_galore.1 man-recode --to-code UTF-8 --suffix .dh-new debian/trim-galore/usr/share/man/man1/trim_galore.1 mv debian/trim-galore/usr/share/man/man1/trim_galore.1.dh-new debian/trim-galore/usr/share/man/man1/trim_galore.1 chmod 0644 -- debian/trim-galore/usr/share/man/man1/trim_galore.1 dh_lintian install -m0755 -d debian/trim-galore/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/trim-galore/usr/share/lintian/overrides/trim-galore dh_perl mv debian/trim-galore.substvars.new debian/trim-galore.substvars dh_link dh_strip_nondeterminism Using 1675627531 as canonical time Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/4_seqs_with_Ns.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/clock_10K_R2.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/clock_10K_R1.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_10K_trimmed.fq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_10K.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/smallRNA_100K.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/nextera_100K.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_100K.fastq.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/trim-galore chmod a-x usr/share/doc/trim-galore/changelog usr/share/doc/trim-galore/changelog.Debian usr/share/man/man1/trim_galore.1 gzip -9nf usr/share/doc/trim-galore/changelog usr/share/doc/trim-galore/changelog.Debian usr/share/man/man1/trim_galore.1 cd '/build/reproducible-path/trim-galore-0.6.10' dh_fixperms find debian/trim-galore ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/trim-galore/usr/share/doc -type f -a -true -a ! -regex 'debian/trim-galore/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/trim-galore/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/trim-galore/usr/share/man debian/trim-galore/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/trim-galore -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/trim-galore/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_installdeb install -m0755 -d debian/trim-galore/DEBIAN dh_gencontrol install -m0755 -d debian/trim-galore/DEBIAN echo misc:Depends= >> debian/trim-galore.substvars echo misc:Pre-Depends= >> debian/trim-galore.substvars dpkg-gencontrol -ptrim-galore -ldebian/changelog -Tdebian/trim-galore.substvars -cdebian/control -Pdebian/trim-galore chmod 0644 -- debian/trim-galore/DEBIAN/control dh_md5sums install -m0755 -d debian/trim-galore/DEBIAN cd debian/trim-galore >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/trim-galore/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/trim-galore .. dpkg-deb: building package 'trim-galore' in '../trim-galore_0.6.10-1_all.deb'. dpkg-genbuildinfo --build=binary -O../trim-galore_0.6.10-1_arm64.buildinfo dpkg-genchanges --build=binary -O../trim-galore_0.6.10-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1963879 and its subdirectories I: Current time: Thu Jun 20 22:39:25 -12 2024 I: pbuilder-time-stamp: 1718966365 Fri Jun 21 10:39:37 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Jun 21 10:39:37 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Jun 21 10:40:25 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Jun 21 10:40:26 UTC 2024 I: trim-galore_0.6.10-1_arm64.changes: Format: 1.8 Date: Sun, 05 Feb 2023 21:05:31 +0100 Source: trim-galore Binary: trim-galore Architecture: all Version: 0.6.10-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: trim-galore - automate quality and adapter trimming for DNA sequencing Changes: trim-galore (0.6.10-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 0c09f9962749566fea5a997929249e63e4d77eaf 17819680 trim-galore_0.6.10-1_all.deb 5cc7eda094345dc6ddd5a61ee4abe5c4a6797beb 4809 trim-galore_0.6.10-1_arm64.buildinfo Checksums-Sha256: 76b6a5b9ceed3089b667a2636393ad49998e85b01bf10e63ca37f53105278de3 17819680 trim-galore_0.6.10-1_all.deb da068322b32d6a6ce6c959614e9c449edfa457733228898064e2e7f2a259b10d 4809 trim-galore_0.6.10-1_arm64.buildinfo Files: e012e0e275f1f0018bdc6a632f7a5ba4 17819680 science optional trim-galore_0.6.10-1_all.deb 46be5a86218ecae0d2120ff7b9fe5ae3 4809 science optional trim-galore_0.6.10-1_arm64.buildinfo Fri Jun 21 10:40:28 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_7-23996.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/trim-galore_0.6.10-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/trim-galore_0.6.10-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/trim-galore_0.6.10-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/b1/trim-galore_0.6.10-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.j4J3E16G/b2/trim-galore_0.6.10-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.559s) 0.559s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.202s) 0.202s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 920ms CPU time consumed: 913ms Fri Jun 21 10:40:29 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 21 10:40:29 UTC 2024 I: trim-galore from trixie built successfully and reproducibly on arm64. Fri Jun 21 10:40:30 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Jun 21 10:40:30 UTC 2024 I: Submitting 8.0K b1/trim-galore_0.6.10-1_arm64.buildinfo.asc Fri Jun 21 10:40:31 UTC 2024 I: Submitting 8.0K b2/trim-galore_0.6.10-1_arm64.buildinfo.asc Fri Jun 21 10:40:32 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 21 10:40:32 UTC 2024 I: Done submitting .buildinfo files. Fri Jun 21 10:40:32 UTC 2024 I: Removing signed trim-galore_0.6.10-1_arm64.buildinfo.asc files: removed './b1/trim-galore_0.6.10-1_arm64.buildinfo.asc' removed './b2/trim-galore_0.6.10-1_arm64.buildinfo.asc'