Fri May 10 14:19:52 UTC 2024 I: starting to build tiddit/trixie/arm64 on jenkins on '2024-05-10 14:19' Fri May 10 14:19:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/17451/console.log Fri May 10 14:19:52 UTC 2024 I: Downloading source for trixie/tiddit=3.6.1+dfsg-1 --2024-05-10 14:19:52-- http://deb.debian.org/debian/pool/main/t/tiddit/tiddit_3.6.1%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘tiddit_3.6.1+dfsg-1.dsc’ 0K .. 100% 305M=0s 2024-05-10 14:19:52 (305 MB/s) - ‘tiddit_3.6.1+dfsg-1.dsc’ saved [2106/2106] Fri May 10 14:19:52 UTC 2024 I: tiddit_3.6.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tiddit Binary: tiddit Architecture: any Version: 3.6.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/SciLifeLab/TIDDIT Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/tiddit Vcs-Git: https://salsa.debian.org/med-team/tiddit.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-numpy, python3-pysam Package-List: tiddit deb science optional arch=any Checksums-Sha1: 27a0f672af1ff377655c55d7fa053bcc617c3a57 19516 tiddit_3.6.1+dfsg.orig.tar.xz b8bb1d3e2a6eaf446f13da2a63b4038f4e271943 1731440 tiddit_3.6.1+dfsg-1.debian.tar.xz Checksums-Sha256: 7dd3dcb7fc861f87daf38b0e3c1b430764555ebba89177da2f84553607454a69 19516 tiddit_3.6.1+dfsg.orig.tar.xz 6583d25eadbb33365122a235e0cf32afa6384b040393380123c897674df760b6 1731440 tiddit_3.6.1+dfsg-1.debian.tar.xz Files: 6f59a022dc62485c94b35623bc1f65c4 19516 tiddit_3.6.1+dfsg.orig.tar.xz 56f6955529788faccd685e01efe01906 1731440 tiddit_3.6.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVL8HsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFgwg//bXc0Q12gfJmurm3rH3fUGp3ovMv/5Q5c Siu/eRLcjYmKONyBTJGGDxRl1dAlSjurzcTkopP9y3FvzVbLXWextpPnNRxxegLZ 7jNBIaej+huCdwFwMrBnwEPlQ9QEWzM4rlzqZvUJ0K+GXterx61UJt0B3RuAaDMT KStdPqbj88CL6PSj5qny8kQ4dDDzAhVEgAa8YU0Uu2XBvH4XetKV2fG7gzVSQndb GxpHKHff72AKIAQxRHYHxg8Rf8GX7RszJx5+fUKV/kckbt0w0ztQexRe/28TiRIY bzHQ7o1bOUhmEEh1u7fOsn23KnjQkGkhc6cn8Y226uEQdjBCW7qo0tcIntd24q/1 0B1fTpO9ll0/isVDbJUri47ZXPKJugeWpmHnRNCvu37tTjJv5jn8G0VzTyI9BPKo Dg09SOkHGdDchUb3jOtQeSnKVtCsQBjhL0E+t6PEfmv9m+ZbqAWNs82rbqE6Oxkh LI8O4X5as+rTp6qlfgzpmj0Oib9iupG+grS/wcky/IYOCWCctij1onQgcza/4MIX oW83X4ihrH8ispEfzTCrLMyb0TZz7N0FgshRNRHFvLz4oDwybC2hQFUdw1XbzO0r aiupCGSn73QWRlF8npDA6RSVPQFuySuP6vlVV3d0rl2tbqt9JhLRP7ExrWl/3uM6 zZRKJeLeuE4= =oYXU -----END PGP SIGNATURE----- Fri May 10 14:19:52 UTC 2024 I: Checking whether the package is not for us Fri May 10 14:19:52 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri May 10 14:19:52 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri May 10 14:36:40 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 10 02:19:54 -12 2024 I: pbuilder-time-stamp: 1715350794 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [tiddit_3.6.1+dfsg-1.dsc] I: copying [./tiddit_3.6.1+dfsg.orig.tar.xz] I: copying [./tiddit_3.6.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 8 20:32:59 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./tiddit_3.6.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting tiddit in tiddit-3.6.1+dfsg dpkg-source: info: unpacking tiddit_3.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking tiddit_3.6.1+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2864202/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='2ff1fd77ab9c433db38d21a47f94a061' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2864202' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/pbuilderrc_p6SY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/b1 --logfile b1/build.log tiddit_3.6.1+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 9 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2864202/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-numpy, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 62.5 MB of archives. After unpacking 305 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.3-1 [802 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.3-1 [1931 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.10+dfsg-5 [3120 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1~rc2-1 [22.5 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 58 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.7.1-3 [405 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.0-1+b1 [71.6 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.19+ds-1.1+b1 [413 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [1889 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.3-1 [1948 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.3-1 [4745 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.11.8-1 [1072 B] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.3-1 [659 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.11.8-1 [1056 B] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.3-1 [499 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.11.8-1 [1072 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-8 [4219 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.0+ds-1+b2 [4209 kB] Fetched 62.5 MB in 1s (66.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... 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Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.61.0-1+b1) ... Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libkrb5support0:arm64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri May 10 14:20:54 UTC 2024. Universal Time is now: Fri May 10 14:20:54 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up autopoint (0.21-14) ... Setting up libk5crypto3:arm64 (1.20.1-6+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.20.1-6+b1) ... Setting up libssh2-1t64:arm64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libpython3.12-stdlib:arm64 (3.12.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:arm64 (8.7.1-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:arm64 (3.12.3-1) ... Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libhts3t64:arm64 (1.19+ds-1.1+b1) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:arm64 (3.12.3-1) ... Setting up libpython3-all-dev:arm64 (3.11.8-1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-pysam (0.22.0+ds-1+b2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/tiddit-3.6.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tiddit_3.6.1+dfsg-1_source.changes dpkg-buildpackage: info: source package tiddit dpkg-buildpackage: info: source version 3.6.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_contig_analysis.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_coverage.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_coverage_analysis.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_signal.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_variant.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling tiddit/tiddit_signal.pyx because it changed. Compiling tiddit/tiddit_coverage.pyx because it changed. Compiling tiddit/tiddit_cluster.pyx because it changed. Compiling tiddit/tiddit_coverage_analysis.pyx because it changed. Compiling tiddit/tiddit_variant.pyx because it changed. Compiling tiddit/tiddit_contig_analysis.pyx because it changed. [1/6] Cythonizing tiddit/tiddit_cluster.pyx [2/6] Cythonizing tiddit/tiddit_contig_analysis.pyx [3/6] Cythonizing tiddit/tiddit_coverage.pyx [4/6] Cythonizing tiddit/tiddit_coverage_analysis.pyx [5/6] Cythonizing tiddit/tiddit_signal.pyx [6/6] Cythonizing tiddit/tiddit_variant.pyx running clean removing '/build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/tiddit-3.6.1+dfsg' dh_clean rm -f tiddit/*.c make[1]: Leaving directory '/build/reproducible-path/tiddit-3.6.1+dfsg' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_contig_analysis.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_coverage.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_coverage_analysis.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_signal.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/tiddit-3.6.1+dfsg/tiddit/tiddit_variant.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling tiddit/tiddit_signal.pyx because it changed. Compiling tiddit/tiddit_coverage.pyx because it changed. Compiling tiddit/tiddit_cluster.pyx because it changed. Compiling tiddit/tiddit_coverage_analysis.pyx because it changed. Compiling tiddit/tiddit_variant.pyx because it changed. Compiling tiddit/tiddit_contig_analysis.pyx because it changed. [1/6] Cythonizing tiddit/tiddit_cluster.pyx [2/6] Cythonizing tiddit/tiddit_contig_analysis.pyx [3/6] Cythonizing tiddit/tiddit_coverage.pyx [4/6] Cythonizing tiddit/tiddit_coverage_analysis.pyx [5/6] Cythonizing tiddit/tiddit_signal.pyx [6/6] Cythonizing tiddit/tiddit_variant.pyx running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit copying tiddit/tiddit_vcf_header.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit copying tiddit/tiddit_stats.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit copying tiddit/__main__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit copying tiddit/__init__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit copying tiddit/DBSCAN.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit running build_ext building 'tiddit.tiddit_signal' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/tiddit aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c tiddit/tiddit_signal.c -o build/temp.linux-aarch64-cpython-312/tiddit/tiddit_signal.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/tiddit/tiddit_signal.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_signal.cpython-312-aarch64-linux-gnu.so building 'tiddit.tiddit_coverage' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c tiddit/tiddit_coverage.c -o build/temp.linux-aarch64-cpython-312/tiddit/tiddit_coverage.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from tiddit/tiddit_coverage.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/tiddit/tiddit_coverage.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_coverage.cpython-312-aarch64-linux-gnu.so building 'tiddit.tiddit_cluster' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c tiddit/tiddit_cluster.c -o build/temp.linux-aarch64-cpython-312/tiddit/tiddit_cluster.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/tiddit/tiddit_cluster.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_cluster.cpython-312-aarch64-linux-gnu.so building 'tiddit.tiddit_coverage_analysis' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c tiddit/tiddit_coverage_analysis.c -o build/temp.linux-aarch64-cpython-312/tiddit/tiddit_coverage_analysis.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from tiddit/tiddit_coverage_analysis.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/tiddit/tiddit_coverage_analysis.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_coverage_analysis.cpython-312-aarch64-linux-gnu.so building 'tiddit.tiddit_variant' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c tiddit/tiddit_variant.c -o build/temp.linux-aarch64-cpython-312/tiddit/tiddit_variant.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/tiddit/tiddit_variant.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_variant.cpython-312-aarch64-linux-gnu.so building 'tiddit.tiddit_contig_analysis' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c tiddit/tiddit_contig_analysis.c -o build/temp.linux-aarch64-cpython-312/tiddit/tiddit_contig_analysis.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/tiddit/tiddit_contig_analysis.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_contig_analysis.cpython-312-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit copying tiddit/tiddit_vcf_header.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit copying tiddit/tiddit_stats.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit copying tiddit/__main__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit copying tiddit/__init__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit copying tiddit/DBSCAN.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit running build_ext building 'tiddit.tiddit_signal' extension creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/tiddit aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tiddit/tiddit_signal.c -o build/temp.linux-aarch64-cpython-311/tiddit/tiddit_signal.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/tiddit/tiddit_signal.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_signal.cpython-311-aarch64-linux-gnu.so building 'tiddit.tiddit_coverage' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tiddit/tiddit_coverage.c -o build/temp.linux-aarch64-cpython-311/tiddit/tiddit_coverage.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from tiddit/tiddit_coverage.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/tiddit/tiddit_coverage.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_coverage.cpython-311-aarch64-linux-gnu.so building 'tiddit.tiddit_cluster' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tiddit/tiddit_cluster.c -o build/temp.linux-aarch64-cpython-311/tiddit/tiddit_cluster.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/tiddit/tiddit_cluster.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_cluster.cpython-311-aarch64-linux-gnu.so building 'tiddit.tiddit_coverage_analysis' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tiddit/tiddit_coverage_analysis.c -o build/temp.linux-aarch64-cpython-311/tiddit/tiddit_coverage_analysis.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from tiddit/tiddit_coverage_analysis.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/tiddit/tiddit_coverage_analysis.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_coverage_analysis.cpython-311-aarch64-linux-gnu.so building 'tiddit.tiddit_variant' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tiddit/tiddit_variant.c -o build/temp.linux-aarch64-cpython-311/tiddit/tiddit_variant.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/tiddit/tiddit_variant.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_variant.cpython-311-aarch64-linux-gnu.so building 'tiddit.tiddit_contig_analysis' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tiddit/tiddit_contig_analysis.c -o build/temp.linux-aarch64-cpython-311/tiddit/tiddit_contig_analysis.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/tiddit-3.6.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/tiddit/tiddit_contig_analysis.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_contig_analysis.cpython-311-aarch64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/tiddit/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12 creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/__pycache__ copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/__pycache__ copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_contig_analysis.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_variant.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_coverage_analysis.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_cluster.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_coverage.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_signal.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/DBSCAN.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/__init__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/__main__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_stats.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.12_tiddit/build/tiddit/tiddit_vcf_header.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/DBSCAN.py to DBSCAN.cpython-312.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/tiddit_stats.py to tiddit_stats.cpython-312.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit/tiddit_vcf_header.py to tiddit_vcf_header.cpython-312.pyc running install_egg_info running egg_info creating tiddit.egg-info writing tiddit.egg-info/PKG-INFO writing dependency_links to tiddit.egg-info/dependency_links.txt writing entry points to tiddit.egg-info/entry_points.txt writing requirements to tiddit.egg-info/requires.txt writing top-level names to tiddit.egg-info/top_level.txt writing manifest file 'tiddit.egg-info/SOURCES.txt' reading manifest file 'tiddit.egg-info/SOURCES.txt' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'tiddit.egg-info/SOURCES.txt' Copying tiddit.egg-info to /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.12/dist-packages/tiddit-3.6.1.egg-info Skipping SOURCES.txt running install_scripts Installing tiddit script to /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11 creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit creating /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/__pycache__ copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/__pycache__ copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_contig_analysis.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_variant.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_coverage_analysis.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_cluster.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_coverage.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_signal.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/DBSCAN.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/__init__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/__main__.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_stats.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit copying /build/reproducible-path/tiddit-3.6.1+dfsg/.pybuild/cpython3_3.11_tiddit/build/tiddit/tiddit_vcf_header.py -> /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/DBSCAN.py to DBSCAN.cpython-311.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/tiddit_stats.py to tiddit_stats.cpython-311.pyc byte-compiling /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit/tiddit_vcf_header.py to tiddit_vcf_header.cpython-311.pyc running install_egg_info running egg_info writing tiddit.egg-info/PKG-INFO writing dependency_links to tiddit.egg-info/dependency_links.txt writing entry points to tiddit.egg-info/entry_points.txt writing requirements to tiddit.egg-info/requires.txt writing top-level names to tiddit.egg-info/top_level.txt reading manifest file 'tiddit.egg-info/SOURCES.txt' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'tiddit.egg-info/SOURCES.txt' Copying tiddit.egg-info to /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/lib/python3.11/dist-packages/tiddit-3.6.1.egg-info Skipping SOURCES.txt running install_scripts Installing tiddit script to /build/reproducible-path/tiddit-3.6.1+dfsg/debian/tiddit/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/tiddit-3.6.1+dfsg' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/tiddit-3.6.1+dfsg' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/tiddit-3.6.1+dfsg' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:113: replacing shebang in debian/tiddit/usr/bin/tiddit make[1]: Leaving directory '/build/reproducible-path/tiddit-3.6.1+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'tiddit-dbgsym' in '../tiddit-dbgsym_3.6.1+dfsg-1_arm64.deb'. dpkg-deb: building package 'tiddit' in '../tiddit_3.6.1+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../tiddit_3.6.1+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../tiddit_3.6.1+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2864202 and its subdirectories I: Current time: Fri May 10 02:36:38 -12 2024 I: pbuilder-time-stamp: 1715351798 Fri May 10 14:36:41 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Fri May 10 14:36:41 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Fri May 10 14:41:25 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Fri May 10 14:41:26 UTC 2024 I: tiddit_3.6.1+dfsg-1_arm64.changes: Format: 1.8 Date: Wed, 08 Nov 2023 21:29:47 +0100 Source: tiddit Binary: tiddit tiddit-dbgsym Architecture: arm64 Version: 3.6.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tiddit - structural variant calling Changes: tiddit (3.6.1+dfsg-1) unstable; urgency=medium . * New upstream version * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: 7f673f42c531fd13d173f6611d21f231a5fdb462 3474152 tiddit-dbgsym_3.6.1+dfsg-1_arm64.deb 68377313b71700384d18caca4d4f5e0a7a122d38 7300 tiddit_3.6.1+dfsg-1_arm64.buildinfo 27b1e564c2402ae9f2a7e0b37b1996eb186d57b5 425016 tiddit_3.6.1+dfsg-1_arm64.deb Checksums-Sha256: 6b4837e3086dc2a0058360bc25d1b89b37bf77fa59806e8aa0acf9839dbd501d 3474152 tiddit-dbgsym_3.6.1+dfsg-1_arm64.deb 19a8a08e033a3ae883d6c36379b7ee7d470eb2d585359a5efd5726cdbee182c3 7300 tiddit_3.6.1+dfsg-1_arm64.buildinfo 922e81f0722d6635e9bf40d616f42165601c69ec385c4b9bf86b7c43468dae32 425016 tiddit_3.6.1+dfsg-1_arm64.deb Files: 5ff18e8df7892b3fa6f65411198c0879 3474152 debug optional tiddit-dbgsym_3.6.1+dfsg-1_arm64.deb 8d48740bfbc533e22226dc49d642b25c 7300 science optional tiddit_3.6.1+dfsg-1_arm64.buildinfo 44d235d7d19609fe0a2c2fb38fe2e9a0 425016 science optional tiddit_3.6.1+dfsg-1_arm64.deb Fri May 10 14:41:28 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_4-17451.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/tiddit_3.6.1+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/tiddit_3.6.1+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/tiddit_3.6.1+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/b1/tiddit_3.6.1+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1sKyzFVt/b2/tiddit_3.6.1+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.460s) 0.460s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.069s) 0.069s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 827ms CPU time consumed: 818ms Fri May 10 14:41:29 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri May 10 14:41:29 UTC 2024 I: tiddit from trixie built successfully and reproducibly on arm64. Fri May 10 14:41:30 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 10 14:41:30 UTC 2024 I: Submitting 8.0K b1/tiddit_3.6.1+dfsg-1_arm64.buildinfo.asc Fri May 10 14:41:31 UTC 2024 I: Submitting 8.0K b2/tiddit_3.6.1+dfsg-1_arm64.buildinfo.asc Fri May 10 14:41:32 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 10 14:41:32 UTC 2024 I: Done submitting .buildinfo files. Fri May 10 14:41:32 UTC 2024 I: Removing signed tiddit_3.6.1+dfsg-1_arm64.buildinfo.asc files: removed './b1/tiddit_3.6.1+dfsg-1_arm64.buildinfo.asc' removed './b2/tiddit_3.6.1+dfsg-1_arm64.buildinfo.asc'