Sun May 12 20:52:41 UTC 2024 I: starting to build ska/trixie/arm64 on jenkins on '2024-05-12 20:52' Sun May 12 20:52:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/40783/console.log Sun May 12 20:52:41 UTC 2024 I: Downloading source for trixie/ska=1.0+dfsg-4 --2024-05-12 20:52:41-- http://deb.debian.org/debian/pool/main/s/ska/ska_1.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2032 (2.0K) [text/prs.lines.tag] Saving to: ‘ska_1.0+dfsg-4.dsc’ 0K . 100% 317M=0s 2024-05-12 20:52:41 (317 MB/s) - ‘ska_1.0+dfsg-4.dsc’ saved [2032/2032] Sun May 12 20:52:41 UTC 2024 I: ska_1.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ska Binary: ska Architecture: any Version: 1.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/simonrharris/SKA Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ska Vcs-Git: https://salsa.debian.org/med-team/ska.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, googletest, libgtest-dev, zlib1g-dev Build-Depends: debhelper-compat (= 13), zlib1g-dev, googletest Package-List: ska deb science optional arch=any Checksums-Sha1: d5e6350fdb1968c91800d6b704495d54ecc0bfc4 85612 ska_1.0+dfsg.orig.tar.xz 66be56949bce8713fbc8ed0a91221394926a3345 4840 ska_1.0+dfsg-4.debian.tar.xz Checksums-Sha256: 1a4aaa448c44b93010ee7dbacd4ff44dcd0876d6f4d9ed20a5ac5bf837e2ab42 85612 ska_1.0+dfsg.orig.tar.xz c5142057c90e05a4a0b48d6eb5d97718c2bd00f132808f2a2c8fed226aacc953 4840 ska_1.0+dfsg-4.debian.tar.xz Files: 6fc4064b3eef8153bee41ead25059339 85612 ska_1.0+dfsg.orig.tar.xz aae9c148071cc82a37f0885618773d2a 4840 ska_1.0+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWuVGsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2PQ//f33+kagu3Oysw5VV+y8hYnGpanTM10kX fgnT5x1POQg8AcAZgSp2F4JsbscNkH70mris1LbFsuSh3heh7uFvVczTo4a229ls MKS954ZOYA2jh2hqnCtjWY68AmhLn+eJmK/i12XDgS6VHmQ/VeDHU2F26iWmWpUx kwMbZiUBjcbd0Zov+uksiRPKCrqvWq8z3nnZqD61vRjsV69rttNyjrym2siBD268 RZKR/Tefsbg73JCsd0zmCS27wFkaD+mfQLVUhLQsI2nKMKxZk0CNyeXIHZyiRDkF ptbFKqPChvqdz71iePNFbCbxmAff6yVEVa40YbDUUIKyZoVJVFbZIMZ/VJ95mZ69 mFd9YCfCEH/CFs2iPURhxmRtENi2U9a66BNNcPApJVMJsNeKg/8ZHFmSAO8Z5El/ LgzEALWP6EBjYzdXZDD/2G5AGjh99y90gLmYHuXacf3oEIlJZba+Tg3adzNkRJZ0 OmmNtMU1rJBllue5MOmyPfxMCDcq0BoLLh4DRsRxDGb9vtg4/ZFZCqC0xrVMq7h4 VnzvWbXrErQg2x3D2ZUY3C4UztIK/1uPaqomFxa93+Q4jjF45tIqLE24pGdfIWSm IrtJp2Q1lzJGB2HA5cSyJpxjISVbV44NL3893TzFLyIz2WbQEiPhEqr2pRGO6YDu uA4osFTeVRM= =rUUd -----END PGP SIGNATURE----- Sun May 12 20:52:41 UTC 2024 I: Checking whether the package is not for us Sun May 12 20:52:41 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sun May 12 20:52:41 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sun May 12 20:53:46 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 12 08:52:43 -12 2024 I: pbuilder-time-stamp: 1715547164 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ska_1.0+dfsg-4.dsc] I: copying [./ska_1.0+dfsg.orig.tar.xz] I: copying [./ska_1.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 22 11:41:31 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ska_1.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting ska in ska-1.0+dfsg dpkg-source: info: unpacking ska_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking ska_1.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include_vector.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1659952/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='96aa6a8523594e339304ffb0f9ff12dd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1659952' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/pbuilderrc_uUwJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/b1 --logfile b1/build.log ska_1.0+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1659952/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After unpacking 80.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 googletest all 1.14.0-1 [512 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Fetched 20.1 MB in 0s (138 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package googletest. Preparing to unpack .../30-googletest_1.14.0-1_all.deb ... Unpacking googletest (1.14.0-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../31-zlib1g-dev_1%3a1.3.dfsg-3.1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up googletest (1.14.0-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' cp -a tests tests.bak cd tests && ln -s /usr/src/googletest/googletest && make && \ ./general_unittest && ./kmers_unittest && ./DNA_unittest make[2]: Entering directory '/build/reproducible-path/ska-1.0+dfsg/tests' g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//general.cpp ../src//general.cpp: In function ‘int openGzFileStream(const std::string&, igzstream&, bool)’: ../src//general.cpp:40:83: warning: unused parameter ‘verbose’ [-Wunused-parameter] 40 | int openGzFileStream(const std::string & fileName, igzstream & gzFileStream, bool verbose){ | ~~~~~^~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest-all.cc g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest_main.cc ar rv gtest_main.a gtest-all.o gtest_main.o ar: creating gtest_main.a a - gtest-all.o a - gtest_main.o g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -lpthread general.o general_unittest.cpp gtest_main.a -o general_unittest -lz g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//kmers.cpp ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:70:22: warning: unused variable ‘basefound’ [-Wunused-variable] 70 | bool basefound=false; | ^~~~~~~~~ ../src//kmers.cpp:75:22: warning: unused variable ‘maxbase’ [-Wunused-variable] 75 | char maxbase; | ^~~~~~~ ../src//kmers.cpp: In function ‘void addKmerToStringMap(std::unordered_map, std::__cxx11::basic_string >&, const std::string&, char, const std::vector&, const std::vector&, int, int, int)’: ../src//kmers.cpp:265:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 274 | for (int i=0; i, std::array >&, const int&)’: ../src//kmers.cpp:304:15: warning: unused variable ‘filecovcutoff’ [-Wunused-variable] 304 | float filecovcutoff; | ^~~~~~~~~~~~~ ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:69:22: warning: ‘base’ may be used uninitialized [-Wmaybe-uninitialized] 69 | char base; | ^~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//DNA.cpp ../src//DNA.cpp: In function ‘int circulariseSequence(std::string&, int)’: ../src//DNA.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 187 | if (mySequence.length() Changed-By: Komolehin Israel Timilehin Description: ska - Split Kmer Analysis Changes: ska (1.0+dfsg-4) unstable; urgency=medium . * Team upload. * Added autopkgtest Checksums-Sha1: 054f2aa3ae15d122232491e925ecd63e7a0042fd 2184412 ska-dbgsym_1.0+dfsg-4_arm64.deb a15c98cbb14de4af7763e491160f88456ec7050b 5131 ska_1.0+dfsg-4_arm64.buildinfo 28d41fd87bda3ad806280d31d4190cccff624150 124896 ska_1.0+dfsg-4_arm64.deb Checksums-Sha256: efbfe9369abfe3bdcb9d8f1b76fc45e57bc052ce599cb386280c519351eb11bc 2184412 ska-dbgsym_1.0+dfsg-4_arm64.deb fc082f83e417fbdc468692b65b2859f8bd3af340a0ad80a375f6df0676a6a14a 5131 ska_1.0+dfsg-4_arm64.buildinfo 1e2021b249554ac0087d62a2aca8cca1c64baeda8e4fa99c8dbec182a8a43618 124896 ska_1.0+dfsg-4_arm64.deb Files: 2fb2ac5b0e9002225b5b82dc5d83411b 2184412 debug optional ska-dbgsym_1.0+dfsg-4_arm64.deb 0dd10f335a00f15092f0b2ecd8e7af42 5131 science optional ska_1.0+dfsg-4_arm64.buildinfo fc8e92267590d3191a7f8c947cfa61e9 124896 science optional ska_1.0+dfsg-4_arm64.deb Sun May 12 20:55:01 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-40783.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/ska_1.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/ska_1.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/ska_1.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/b1/ska_1.0+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.kA78vvFt/b2/ska_1.0+dfsg-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.395s) 0.395s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 737ms CPU time consumed: 738ms Sun May 12 20:55:02 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Sun May 12 20:55:02 UTC 2024 I: ska from trixie built successfully and reproducibly on arm64. Sun May 12 20:55:03 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 12 20:55:03 UTC 2024 I: Submitting 8.0K b1/ska_1.0+dfsg-4_arm64.buildinfo.asc Sun May 12 20:55:04 UTC 2024 I: Submitting 8.0K b2/ska_1.0+dfsg-4_arm64.buildinfo.asc Sun May 12 20:55:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 12 20:55:05 UTC 2024 I: Done submitting .buildinfo files. Sun May 12 20:55:05 UTC 2024 I: Removing signed ska_1.0+dfsg-4_arm64.buildinfo.asc files: removed './b1/ska_1.0+dfsg-4_arm64.buildinfo.asc' removed './b2/ska_1.0+dfsg-4_arm64.buildinfo.asc'