Sat Jan 11 17:53:16 UTC 2025 I: starting to build seqkit/trixie/arm64 on jenkins on '2025-01-11 17:53'
Sat Jan 11 17:53:16 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_19/53069/console.log
Sat Jan 11 17:53:16 UTC 2025 I: Downloading source for trixie/seqkit=2.9.0+ds-1
--2025-01-11 17:53:16-- http://deb.debian.org/debian/pool/main/s/seqkit/seqkit_2.9.0%2bds-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 3288 (3.2K) [text/prs.lines.tag]
Saving to: ‘seqkit_2.9.0+ds-1.dsc’
0K ... 100% 420M=0s
2025-01-11 17:53:16 (420 MB/s) - ‘seqkit_2.9.0+ds-1.dsc’ saved [3288/3288]
Sat Jan 11 17:53:16 UTC 2025 I: seqkit_2.9.0+ds-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: seqkit
Binary: seqkit, seqkit-examples
Architecture: any all
Version: 2.9.0+ds-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Nilesh Patra <nilesh@debian.org>
Homepage: https://github.com/shenwei356/seqkit
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/seqkit
Vcs-Git: https://salsa.debian.org/med-team/seqkit.git
Testsuite: autopkgtest
Testsuite-Triggers: openssl, ssshtest
Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-bsipos-thist-dev, golang-github-cespare-xxhash-dev, golang-github-cznic-sortutil-dev, golang-github-dsnet-compress-dev, golang-github-dustin-go-humanize-dev, golang-github-elliotwutingfeng-asciiset-dev, golang-github-fsnotify-fsnotify-dev, golang-github-logrusorgru-aurora-dev, golang-github-mattn-go-colorable-dev, golang-github-mattn-go-isatty-dev, golang-github-mitchellh-go-homedir-dev, golang-github-op-go-logging-dev, golang-github-shenwei356-bio-dev (>= 0.13.3), golang-github-shenwei356-bwt-dev (>= 0.5.1), golang-github-shenwei356-stable-dev, golang-github-spf13-cobra-dev, golang-github-iafan-cwalk-dev, golang-github-smallfish-simpleyaml-dev, golang-github-twotwotwo-sorts-dev, golang-github-klauspost-compress-dev, golang-github-klauspost-pgzip-dev, golang-github-pkg-errors-dev, golang-github-shenwei356-breader-dev, golang-github-shenwei356-util-dev, golang-github-shenwei356-xopen-dev (>= 0.0~git20231203.5ad79ea), golang-github-ulikunitz-xz-dev, golang-github-vbauerster-mpb-dev (>= 8.8.3-1~), samtools
Package-List:
seqkit deb science optional arch=any
seqkit-examples deb science optional arch=all
Checksums-Sha1:
1eb2f52c965ec709cab9dc488e0bf6d5440242a0 16637416 seqkit_2.9.0+ds.orig.tar.xz
94916f1d872e87fbd7cc9eff4c4adbe717f8f776 10775960 seqkit_2.9.0+ds-1.debian.tar.xz
Checksums-Sha256:
71ea80df0998c5551d751ece94c84024bec2edbd8f56ac1d5908914ed4710a4f 16637416 seqkit_2.9.0+ds.orig.tar.xz
db029e1cd27002b93a33da6814cd67a5c858517716be714a6fe2a04b41d6ec2a 10775960 seqkit_2.9.0+ds-1.debian.tar.xz
Files:
3b7f4adf97dde6b1d46eb64e8ebde17d 16637416 seqkit_2.9.0+ds.orig.tar.xz
7b44a01d24f59e163047529fae89c73e 10775960 seqkit_2.9.0+ds-1.debian.tar.xz
Go-Import-Path: github.com/shenwei356/seqkit
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Sat Jan 11 17:53:16 UTC 2025 I: Checking whether the package is not for us
Sat Jan 11 17:53:16 UTC 2025 I: Starting 1st build on remote node codethink02-arm64.debian.net.
Sat Jan 11 17:53:16 UTC 2025 I: Preparing to do remote build '1' on codethink02-arm64.debian.net.
Sat Jan 11 17:55:04 UTC 2025 I: Deleting $TMPDIR on codethink02-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sat Jan 11 05:53:19 -12 2025
I: pbuilder-time-stamp: 1736617999
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [seqkit_2.9.0+ds-1.dsc]
I: copying [./seqkit_2.9.0+ds.orig.tar.xz]
I: copying [./seqkit_2.9.0+ds-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./seqkit_2.9.0+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting seqkit in seqkit-2.9.0+ds
dpkg-source: info: unpacking seqkit_2.9.0+ds.orig.tar.xz
dpkg-source: info: unpacking seqkit_2.9.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-upstream-go-logger.patch
dpkg-source: info: applying use-original-thist.patch
dpkg-source: info: applying use-new-mpb.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1507591/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='arm64'
IFS='
'
INVOCATION_ID='3300cf09d7264f03a27c338be898b982'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='1507591'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/pbuilderrc_oMRB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/b1 --logfile b1/build.log seqkit_2.9.0+ds-1.dsc'
SUDO_GID='109'
SUDO_UID='104'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.4:3128'
I: uname -a
Linux codethink02-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1507591/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-bsipos-thist-dev, golang-github-cespare-xxhash-dev, golang-github-cznic-sortutil-dev, golang-github-dsnet-compress-dev, golang-github-dustin-go-humanize-dev, golang-github-elliotwutingfeng-asciiset-dev, golang-github-fsnotify-fsnotify-dev, golang-github-logrusorgru-aurora-dev, golang-github-mattn-go-colorable-dev, golang-github-mattn-go-isatty-dev, golang-github-mitchellh-go-homedir-dev, golang-github-op-go-logging-dev, golang-github-shenwei356-bio-dev (>= 0.13.3), golang-github-shenwei356-bwt-dev (>= 0.5.1), golang-github-shenwei356-stable-dev, golang-github-spf13-cobra-dev, golang-github-iafan-cwalk-dev, golang-github-smallfish-simpleyaml-dev, golang-github-twotwotwo-sorts-dev, golang-github-klauspost-compress-dev, golang-github-klauspost-pgzip-dev, golang-github-pkg-errors-dev, golang-github-shenwei356-breader-dev, golang-github-shenwei356-util-dev, golang-github-shenwei356-xopen-dev (>= 0.0~git20231203.5ad79ea), golang-github-ulikunitz-xz-dev, golang-github-vbauerster-mpb-dev (>= 8.8.3-1~), samtools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19968 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-golang; however:
Package dh-golang is not installed.
pbuilder-satisfydepends-dummy depends on golang-any; however:
Package golang-any is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however:
Package golang-github-biogo-biogo-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however:
Package golang-github-biogo-hts-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-bsipos-thist-dev; however:
Package golang-github-bsipos-thist-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-cespare-xxhash-dev; however:
Package golang-github-cespare-xxhash-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-cznic-sortutil-dev; however:
Package golang-github-cznic-sortutil-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-dsnet-compress-dev; however:
Package golang-github-dsnet-compress-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-dustin-go-humanize-dev; however:
Package golang-github-dustin-go-humanize-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-elliotwutingfeng-asciiset-dev; however:
Package golang-github-elliotwutingfeng-asciiset-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-fsnotify-fsnotify-dev; however:
Package golang-github-fsnotify-fsnotify-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-logrusorgru-aurora-dev; however:
Package golang-github-logrusorgru-aurora-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-mattn-go-colorable-dev; however:
Package golang-github-mattn-go-colorable-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-mattn-go-isatty-dev; however:
Package golang-github-mattn-go-isatty-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-mitchellh-go-homedir-dev; however:
Package golang-github-mitchellh-go-homedir-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-op-go-logging-dev; however:
Package golang-github-op-go-logging-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-bio-dev (>= 0.13.3); however:
Package golang-github-shenwei356-bio-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-bwt-dev (>= 0.5.1); however:
Package golang-github-shenwei356-bwt-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-stable-dev; however:
Package golang-github-shenwei356-stable-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-spf13-cobra-dev; however:
Package golang-github-spf13-cobra-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-iafan-cwalk-dev; however:
Package golang-github-iafan-cwalk-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-smallfish-simpleyaml-dev; however:
Package golang-github-smallfish-simpleyaml-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-twotwotwo-sorts-dev; however:
Package golang-github-twotwotwo-sorts-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-klauspost-compress-dev; however:
Package golang-github-klauspost-compress-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-klauspost-pgzip-dev; however:
Package golang-github-klauspost-pgzip-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-pkg-errors-dev; however:
Package golang-github-pkg-errors-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-breader-dev; however:
Package golang-github-shenwei356-breader-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-util-dev; however:
Package golang-github-shenwei356-util-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-xopen-dev (>= 0.0~git20231203.5ad79ea); however:
Package golang-github-shenwei356-xopen-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-ulikunitz-xz-dev; however:
Package golang-github-ulikunitz-xz-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-vbauerster-mpb-dev (>= 8.8.3-1~); however:
Package golang-github-vbauerster-mpb-dev is not installed.
pbuilder-satisfydepends-dummy depends on samtools; however:
Package samtools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.23-go{a} golang-1.23-src{a} golang-any{a} golang-github-acarl005-stripansi-dev{a} golang-github-ajstarks-svgo-dev{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-bsipos-thist-dev{a} golang-github-burntsushi-toml-dev{a} golang-github-cespare-xxhash-dev{a} golang-github-cpuguy83-go-md2man-v2-dev{a} golang-github-creack-pty-dev{a} golang-github-cznic-mathutil-dev{a} golang-github-cznic-sortutil-dev{a} golang-github-davecgh-go-spew-dev{a} golang-github-dsnet-compress-dev{a} golang-github-dsnet-golib-dev{a} golang-github-dustin-go-humanize-dev{a} golang-github-edsrzf-mmap-go-dev{a} golang-github-elliotwutingfeng-asciiset-dev{a} golang-github-fogleman-gg-dev{a} golang-github-fsnotify-fsnotify-dev{a} golang-github-golang-freetype-dev{a} golang-github-google-go-cmp-dev{a} golang-github-hashicorp-hcl-dev{a} golang-github-iafan-cwalk-dev{a} golang-github-jung-kurt-gofpdf-dev{a} golang-github-klauspost-compress-dev{a} golang-github-klauspost-pgzip-dev{a} golang-github-kr-fs-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-logrusorgru-aurora-dev{a} golang-github-magiconair-properties-dev{a} golang-github-mattn-go-colorable-dev{a} golang-github-mattn-go-isatty-dev{a} golang-github-mattn-go-runewidth-dev{a} golang-github-mitchellh-go-homedir-dev{a} golang-github-mitchellh-mapstructure-dev{a} golang-github-op-go-logging-dev{a} golang-github-pelletier-go-toml-dev{a} golang-github-pelletier-go-toml.v2-dev{a} golang-github-pkg-errors-dev{a} golang-github-pkg-sftp-dev{a} golang-github-pmezard-go-difflib-dev{a} golang-github-remyoudompheng-bigfft-dev{a} golang-github-rivo-uniseg-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-russross-blackfriday-v2-dev{a} golang-github-shenwei356-bio-dev{a} golang-github-shenwei356-breader-dev{a} golang-github-shenwei356-bwt-dev{a} golang-github-shenwei356-natsort-dev{a} golang-github-shenwei356-stable-dev{a} golang-github-shenwei356-util-dev{a} golang-github-shenwei356-xopen-dev{a} golang-github-shurcool-sanitized-anchor-name-dev{a} golang-github-smallfish-simpleyaml-dev{a} golang-github-spf13-afero-dev{a} golang-github-spf13-cast-dev{a} golang-github-spf13-cobra-dev{a} golang-github-spf13-jwalterweatherman-dev{a} golang-github-spf13-pflag-dev{a} golang-github-spf13-viper-dev{a} golang-github-stretchr-objx-dev{a} golang-github-stretchr-testify-dev{a} golang-github-subosito-gotenv-dev{a} golang-github-twotwotwo-sorts-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-vbauerster-mpb-dev{a} golang-github-vividcortex-ewma-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-exp-dev{a} golang-golang-x-image-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gonum-v1-plot-dev{a} golang-gopkg-check.v1-dev{a} golang-gopkg-ini.v1-dev{a} golang-gopkg-yaml.v2-dev{a} golang-gopkg-yaml.v3-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} tzdata{a} tzdata-legacy{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkgconf publicsuffix wget
0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded.
Need to get 125 MB of archives. After unpacking 520 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-4 [256 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-13 [91.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 dh-golang all 1.62 [24.7 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 golang-1.23-src all 1.23.4-2 [19.1 MB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 golang-1.23-go arm64 1.23.4-2 [23.5 MB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 golang-src all 2:1.23~2 [5088 B]
Get: 36 http://deb.debian.org/debian trixie/main arm64 golang-go arm64 2:1.23~2 [44.3 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 golang-any arm64 2:1.23~2 [5172 B]
Get: 38 http://deb.debian.org/debian trixie/main arm64 golang-github-acarl005-stripansi-dev all 0.0~git20180116.5a71ef0-3 [2888 B]
Get: 39 http://deb.debian.org/debian trixie/main arm64 golang-github-ajstarks-svgo-dev all 2012-01-27-3 [12.9 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 golang-github-biogo-hts-dev all 1.4.5+dfsg1-1 [319 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-mod-dev all 0.19.0-1 [104 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-sys-dev all 0.22.0-1 [431 kB]
Get: 46 http://deb.debian.org/debian trixie/main arm64 golang-github-yuin-goldmark-dev all 1.7.4-1 [113 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-term-dev all 0.22.0-1 [14.8 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-text-dev all 0.16.0-1 [4003 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-crypto-dev all 1:0.25.0-1 [1682 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-net-dev all 1:0.27.0-1 [898 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-tools-dev all 1:0.23.0+ds-1 [1593 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-exp-dev all 0.0~git20231006.7918f67-1 [105 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 golang-golang-x-image-dev all 0.18.0-1 [3000 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 golang-github-jung-kurt-gofpdf-dev all 2.17.2+ds-3 [954 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 golang-github-golang-freetype-dev all 0.0~git20170609.e2365df+dfsg-2 [54.0 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 golang-github-fogleman-gg-dev all 1.3.0-3 [14.8 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 golang-gonum-v1-plot-dev all 0.7.0-5 [4804 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 golang-github-bsipos-thist-dev all 1.0.0-2 [8636 B]
Get: 64 http://deb.debian.org/debian trixie/main arm64 golang-github-burntsushi-toml-dev all 1.4.0-1 [116 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 golang-github-pmezard-go-difflib-dev all 1.0.0-3 [12.3 kB]
Get: 66 http://deb.debian.org/debian trixie/main arm64 golang-github-shurcool-sanitized-anchor-name-dev all 1.0.0-3 [3748 B]
Get: 67 http://deb.debian.org/debian trixie/main arm64 golang-github-russross-blackfriday-v2-dev all 2.1.0-1 [76.1 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 golang-github-cpuguy83-go-md2man-v2-dev all 2.0.4-1 [10.8 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 golang-github-remyoudompheng-bigfft-dev all 0.0+git20230129.24d4a6f-1 [13.2 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 golang-github-cznic-mathutil-dev all 0.0~git20201220.c6aa83b-2 [75.9 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 golang-github-cznic-sortutil-dev all 0.0~git20150617.0.4c73428-3 [5420 B]
Get: 72 http://deb.debian.org/debian trixie/main arm64 golang-github-davecgh-go-spew-dev all 1.1.1-3 [30.1 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 golang-github-google-go-cmp-dev all 0.6.0-1 [86.6 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 golang-github-dsnet-golib-dev all 0.0~git20171103.1ea1667-1.1 [34.1 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 golang-github-cespare-xxhash-dev all 2.3.0-1 [10.8 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 golang-github-klauspost-compress-dev all 1.17.11+ds1-1 [33.3 MB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 golang-github-dsnet-compress-dev all 0.0.2~git20230904.39efe44+dfsg1-2 [189 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 golang-github-dustin-go-humanize-dev all 1.0.1-1 [16.9 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 golang-github-edsrzf-mmap-go-dev all 1.2.0-1 [8672 B]
Get: 86 http://deb.debian.org/debian trixie/main arm64 golang-github-elliotwutingfeng-asciiset-dev all 0.0~git20240214.24af97c-2 [6252 B]
Get: 87 http://deb.debian.org/debian trixie/main arm64 golang-github-fsnotify-fsnotify-dev all 1.8.0-1 [61.8 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 golang-github-hashicorp-hcl-dev all 1.0.0-1.1 [58.8 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 golang-github-iafan-cwalk-dev all 0.0~git20191125.dd7f505-3 [6128 B]
Get: 90 http://deb.debian.org/debian trixie/main arm64 golang-github-klauspost-pgzip-dev all 1.2.6-1 [115 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 golang-github-kr-fs-dev all 0.1.0-2 [6412 B]
Get: 92 http://deb.debian.org/debian trixie/main arm64 golang-github-logrusorgru-aurora-dev all 3.0.0-2 [19.0 kB]
Get: 93 http://deb.debian.org/debian trixie/main arm64 golang-github-magiconair-properties-dev all 1.8.7-1 [29.5 kB]
Get: 94 http://deb.debian.org/debian trixie/main arm64 golang-github-mattn-go-isatty-dev all 0.0.20-1 [6080 B]
Get: 95 http://deb.debian.org/debian trixie/main arm64 golang-github-mattn-go-colorable-dev all 0.1.13-1 [10.3 kB]
Get: 96 http://deb.debian.org/debian trixie/main arm64 golang-github-rivo-uniseg-dev all 0.4.7-1 [256 kB]
Get: 97 http://deb.debian.org/debian trixie/main arm64 golang-github-mattn-go-runewidth-dev all 0.0.15-2 [16.0 kB]
Get: 98 http://deb.debian.org/debian trixie/main arm64 golang-github-mitchellh-go-homedir-dev all 1.1.0-1 [5168 B]
Get: 99 http://deb.debian.org/debian trixie/main arm64 golang-github-mitchellh-mapstructure-dev all 1.5.0+git20231216.8508981-1 [29.3 kB]
Get: 100 http://deb.debian.org/debian trixie/main arm64 golang-github-op-go-logging-dev all 1+git20160315.970db52-2 [17.5 kB]
Get: 101 http://deb.debian.org/debian trixie/main arm64 golang-gopkg-yaml.v2-dev all 2.4.0-4 [61.5 kB]
Get: 102 http://deb.debian.org/debian trixie/main arm64 golang-github-pelletier-go-toml-dev all 1.9.5-1 [77.6 kB]
Get: 103 http://deb.debian.org/debian trixie/main arm64 golang-github-pelletier-go-toml.v2-dev all 2.2.1-1 [876 kB]
Get: 104 http://deb.debian.org/debian trixie/main arm64 golang-github-pkg-errors-dev all 0.9.1-3 [12.9 kB]
Get: 105 http://deb.debian.org/debian trixie/main arm64 golang-github-pkg-sftp-dev all 1.13.6-1 [102 kB]
Get: 106 http://deb.debian.org/debian trixie/main arm64 golang-github-twotwotwo-sorts-dev all 0.0~git20160814.bf5c1f2-3 [19.7 kB]
Get: 107 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-xopen-dev all 0.0~git20231203.5ad79ea-1 [6204 B]
Get: 108 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-breader-dev all 0.3.2-1 [6236 B]
Get: 109 http://deb.debian.org/debian trixie/main arm64 golang-github-spf13-pflag-dev all 1.0.6~git20210604-d5e0c0615ace-1 [43.0 kB]
Get: 110 http://deb.debian.org/debian trixie/main arm64 golang-github-spf13-afero-dev all 1.11.0-1 [58.3 kB]
Get: 111 http://deb.debian.org/debian trixie/main arm64 tzdata-legacy all 2024b-4 [176 kB]
Get: 112 http://deb.debian.org/debian trixie/main arm64 golang-github-spf13-cast-dev all 1.6.0-2 [14.0 kB]
Get: 113 http://deb.debian.org/debian trixie/main arm64 golang-github-stretchr-objx-dev all 0.5.2-1 [25.5 kB]
Get: 114 http://deb.debian.org/debian trixie/main arm64 golang-gopkg-yaml.v3-dev all 3.0.1-3 [74.3 kB]
Get: 115 http://deb.debian.org/debian trixie/main arm64 golang-github-stretchr-testify-dev all 1.9.0-1 [74.7 kB]
Get: 116 http://deb.debian.org/debian trixie/main arm64 golang-github-spf13-jwalterweatherman-dev all 1.1.0+really1.1.0-2 [8084 B]
Get: 117 http://deb.debian.org/debian trixie/main arm64 golang-github-subosito-gotenv-dev all 1.3.0-1 [9340 B]
Get: 118 http://deb.debian.org/debian trixie/main arm64 golang-gopkg-ini.v1-dev all 1.67.0-1 [39.9 kB]
Get: 119 http://deb.debian.org/debian trixie/main arm64 golang-github-spf13-viper-dev all 1.12.0-1 [68.9 kB]
Get: 120 http://deb.debian.org/debian trixie/main arm64 golang-github-spf13-cobra-dev all 1.8.1-1 [75.2 kB]
Get: 121 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-natsort-dev all 0.0~git20190418.600d539-3 [3812 B]
Get: 122 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB]
Get: 123 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-bio-dev all 0.13.3-1 [69.2 kB]
Get: 124 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-bwt-dev all 0.6.0-2 [7452 B]
Get: 125 http://deb.debian.org/debian trixie/main arm64 golang-github-shenwei356-stable-dev all 0.1.7-2 [10.8 kB]
Get: 126 http://deb.debian.org/debian trixie/main arm64 golang-github-smallfish-simpleyaml-dev all 0.0~git20170911.a320310-2 [4692 B]
Get: 127 http://deb.debian.org/debian trixie/main arm64 golang-github-vividcortex-ewma-dev all 1.1.1-2 [5384 B]
Get: 128 http://deb.debian.org/debian trixie/main arm64 golang-github-vbauerster-mpb-dev all 8.8.3-1 [36.8 kB]
Get: 129 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 130 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 131 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 132 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 133 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 134 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB]
Get: 135 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB]
Get: 136 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB]
Get: 137 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 138 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB]
Get: 139 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB]
Get: 140 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB]
Get: 141 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB]
Get: 142 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.19+dfsg-1 [175 kB]
Get: 143 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 144 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 145 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 146 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 147 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 148 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 149 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 150 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.1-1 [332 kB]
Get: 151 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get: 152 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get: 153 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB]
Get: 154 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB]
Get: 155 http://deb.debian.org/debian trixie/main arm64 samtools arm64 1.20-3+b1 [629 kB]
Fetched 125 MB in 1s (204 MB/s)
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Preparing to unpack .../000-tzdata_2024b-4_all.deb ...
Unpacking tzdata (2024b-4) ...
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Unpacking sensible-utils (0.0.24) ...
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Unpacking libmagic-mgc (1:5.45-3+b1) ...
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Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
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Unpacking gettext-base (0.22.5-4) ...
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Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
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Unpacking groff-base (1.23.0-7) ...
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Unpacking libpipeline1:arm64 (1.5.8-1) ...
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Unpacking man-db (2.13.0-1) ...
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Unpacking m4 (1.4.19-5) ...
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Current default time zone: 'Etc/UTC'
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/seqkit-2.9.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_2.9.0+ds-1_source.changes
dpkg-buildpackage: info: source package seqkit
dpkg-buildpackage: info: source version 2.9.0+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Maytham Alsudany <maytha8thedev@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
dh_auto_clean -O--buildsystem=golang -O--builddirectory=build
dh_autoreconf_clean -O--buildsystem=golang -O--builddirectory=build
dh_clean -O--buildsystem=golang -O--builddirectory=build
debian/rules binary
dh binary --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
dh_update_autotools_config -O--buildsystem=golang -O--builddirectory=build
dh_autoreconf -O--buildsystem=golang -O--builddirectory=build
dh_auto_configure -O--buildsystem=golang -O--builddirectory=build
dh_auto_build -O--buildsystem=golang -O--builddirectory=build
cd build && go install -trimpath -v -p 12 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
internal/goarch
internal/godebugs
internal/itoa
cmp
internal/profilerecord
internal/coverage/rtcov
internal/byteorder
internal/unsafeheader
internal/goexperiment
internal/goos
internal/cpu
runtime/internal/math
internal/runtime/syscall
internal/race
internal/abi
math/bits
unicode/utf8
sync/atomic
unicode
runtime/internal/sys
internal/asan
internal/msan
log/internal
internal/chacha8rand
internal/nettrace
image/color
math
internal/bytealg
internal/goversion
internal/runtime/atomic
internal/platform
golang.org/x/image/math/f64
crypto/internal/alias
crypto/subtle
crypto/internal/boring/sig
encoding
unicode/utf16
github.com/dsnet/compress/internal
github.com/dsnet/compress/bzip2/internal/sais
image/color/palette
github.com/elliotwutingfeng/asciiset
github.com/ulikunitz/xz/internal/hash
container/list
internal/runtime/exithook
vendor/golang.org/x/crypto/cryptobyte/asn1
vendor/golang.org/x/crypto/internal/alias
github.com/VividCortex/ewma
github.com/rivo/uniseg
internal/stringslite
runtime
github.com/klauspost/compress
github.com/shenwei356/util/math
github.com/vbauerster/mpb/internal
internal/reflectlite
iter
sync
internal/weak
slices
maps
internal/bisect
internal/singleflight
internal/testlog
runtime/cgo
errors
sort
strconv
io
internal/oserror
internal/godebug
path
vendor/golang.org/x/net/dns/dnsmessage
math/rand/v2
gonum.org/v1/plot/palette
strings
syscall
internal/concurrent
crypto/internal/nistec/fiat
bytes
hash
crypto/internal/edwards25519/field
hash/crc32
container/heap
internal/saferio
unique
reflect
crypto
hash/adler32
crypto/rc4
crypto/md5
math/rand
crypto/internal/randutil
hash/crc64
crypto/internal/edwards25519
vendor/golang.org/x/text/transform
crypto/cipher
net/netip
github.com/biogo/biogo/feat
bufio
regexp/syntax
go/build/constraint
html
crypto/internal/boring
github.com/dsnet/compress/internal/errors
crypto/sha1
crypto/sha256
crypto/aes
crypto/des
crypto/sha512
image
github.com/dsnet/compress
crypto/hmac
net/http/internal/ascii
github.com/twotwotwo/sorts
github.com/shenwei356/util/randutil
vendor/golang.org/x/crypto/hkdf
github.com/twotwotwo/sorts/sortutil
github.com/shenwei356/bio/util
regexp
time
internal/syscall/execenv
internal/syscall/unix
image/internal/imageutil
image/draw
image/jpeg
golang.org/x/image/draw
github.com/shenwei356/natsort
github.com/acarl005/stripansi
context
internal/poll
io/fs
internal/fmtsort
encoding/binary
internal/filepathlite
embed
crypto/internal/nistec
os
golang.org/x/image/ccitt
encoding/base64
github.com/cespare/xxhash
github.com/klauspost/compress/internal/snapref
golang.org/x/sys/unix
vendor/golang.org/x/crypto/internal/poly1305
vendor/golang.org/x/crypto/chacha20
index/suffixarray
encoding/pem
vendor/golang.org/x/crypto/chacha20poly1305
github.com/shenwei356/bwt
crypto/ecdh
fmt
internal/lazyregexp
path/filepath
os/signal
github.com/mattn/go-runewidth
vendor/golang.org/x/sys/cpu
io/ioutil
net
vendor/golang.org/x/crypto/sha3
os/exec
internal/goroot
github.com/mitchellh/go-homedir
github.com/biogo/biogo/alphabet
log
encoding/hex
text/tabwriter
compress/flate
net/url
golang.org/x/image/math/fixed
go/token
go/doc/comment
internal/buildcfg
golang.org/x/image/tiff/lzw
encoding/gob
github.com/golang/freetype/raster
golang.org/x/image/font
go/scanner
golang.org/x/image/font/basicfont
encoding/json
encoding/xml
github.com/golang/freetype/truetype
github.com/biogo/biogo/seq
compress/lzw
go/ast
runtime/debug
math/big
image/gif
github.com/biogo/biogo/io/seqio
github.com/biogo/biogo/seq/linear
github.com/biogo/biogo/io/seqio/fasta
github.com/biogo/biogo/align
compress/gzip
github.com/mattn/go-isatty
golang.org/x/term
github.com/shenwei356/seqkit/benchmark
github.com/biogo/hts/bgzf
github.com/mattn/go-colorable
gonum.org/v1/plot/vg/fonts
compress/zlib
golang.org/x/crypto/ssh/terminal
github.com/ajstarks/svgo
github.com/dsnet/compress/internal/prefix
github.com/biogo/hts/bgzf/index
image/png
golang.org/x/image/tiff
go/doc
go/internal/typeparams
github.com/biogo/hts/internal
github.com/fsnotify/fsnotify/internal
go/parser
github.com/iafan/cwalk
github.com/biogo/hts/sam
github.com/klauspost/compress/fse
github.com/klauspost/compress/flate
github.com/logrusorgru/aurora
github.com/dsnet/compress/bzip2
github.com/fsnotify/fsnotify
github.com/fogleman/gg
github.com/jung-kurt/gofpdf
github.com/pkg/errors
github.com/cznic/sortutil
github.com/dustin/go-humanize
crypto/rand
github.com/klauspost/compress/huff0
github.com/ulikunitz/xz/internal/xlog
crypto/elliptic
crypto/internal/bigmod
github.com/biogo/hts/bam
crypto/internal/boring/bbig
encoding/asn1
github.com/ulikunitz/xz/lzma
crypto/ed25519
crypto/internal/hpke
crypto/internal/mlkem768
go/build
crypto/dsa
github.com/klauspost/compress/zstd
crypto/rsa
vendor/golang.org/x/text/unicode/bidi
vendor/golang.org/x/text/unicode/norm
vendor/golang.org/x/net/http2/hpack
mime
mime/quotedprintable
vendor/golang.org/x/crypto/cryptobyte
crypto/x509/pkix
vendor/golang.org/x/text/secure/bidirule
net/http/internal
github.com/klauspost/pgzip
os/user
github.com/ulikunitz/xz
github.com/shenwei356/util/byteutil
github.com/edsrzf/mmap-go
github.com/shenwei356/bwt/fmi
github.com/shenwei356/bio/seq
crypto/ecdsa
github.com/shenwei356/bio/seqio/fai
github.com/shenwei356/stable
github.com/shenwei356/util/pathutil
gonum.org/v1/plot/vg
github.com/shenwei356/util/stringutil
gopkg.in/yaml.v2
encoding/csv
flag
text/template/parse
vendor/golang.org/x/net/idna
gonum.org/v1/plot/vg/vgeps
gonum.org/v1/plot/vg/vgimg
gonum.org/v1/plot/vg/vgsvg
gonum.org/v1/plot/tools/bezier
github.com/vbauerster/mpb/cwriter
github.com/vbauerster/mpb/decor
github.com/vbauerster/mpb
text/template
github.com/smallfish/simpleyaml
gonum.org/v1/plot/vg/vgpdf
gonum.org/v1/plot/vg/draw
gonum.org/v1/plot
gonum.org/v1/plot/plotter
log/syslog
github.com/spf13/pflag
net/textproto
vendor/golang.org/x/net/http/httpproxy
crypto/x509
github.com/op/go-logging
vendor/golang.org/x/net/http/httpguts
mime/multipart
gonum.org/v1/plot/plotutil
github.com/bsipos/thist
crypto/tls
github.com/spf13/cobra
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/shenwei356/breader
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/bio/featio/gtf
github.com/shenwei356/seqkit/seqkit/cmd
github.com/shenwei356/seqkit/seqkit
dh_auto_test -O--buildsystem=golang -O--builddirectory=build
cd build && go test -vet=off -v -p 12 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
? github.com/shenwei356/seqkit/benchmark [no test files]
? github.com/shenwei356/seqkit/seqkit [no test files]
? github.com/shenwei356/seqkit/seqkit/cmd [no test files]
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=golang -O--builddirectory=build
dh_prep -O--buildsystem=golang -O--builddirectory=build
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/seqkit-2.9.0+ds'
dh_auto_install -- --no-source
cd build && mkdir -p /build/reproducible-path/seqkit-2.9.0\+ds/debian/tmp/usr
cd build && cp -r bin /build/reproducible-path/seqkit-2.9.0\+ds/debian/tmp/usr
make[1]: Leaving directory '/build/reproducible-path/seqkit-2.9.0+ds'
dh_install -O--buildsystem=golang -O--builddirectory=build
debian/rules override_dh_installdocs
make[1]: Entering directory '/build/reproducible-path/seqkit-2.9.0+ds'
# Regenerate bam and bam index files
cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam
cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam
cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam
samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai
samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai
samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai
dh_installdocs
make[1]: Leaving directory '/build/reproducible-path/seqkit-2.9.0+ds'
dh_installchangelogs -O--buildsystem=golang -O--builddirectory=build
dh_installman -O--buildsystem=golang -O--builddirectory=build
dh_installsystemduser -O--buildsystem=golang -O--builddirectory=build
dh_perl -O--buildsystem=golang -O--builddirectory=build
dh_link -O--buildsystem=golang -O--builddirectory=build
dh_strip_nondeterminism -O--buildsystem=golang -O--builddirectory=build
dh_compress -O--buildsystem=golang -O--builddirectory=build
dh_fixperms -O--buildsystem=golang -O--builddirectory=build
dh_missing -O--buildsystem=golang -O--builddirectory=build
dh_strip -a -O--buildsystem=golang -O--builddirectory=build
dh_strip: warning: Could not find the BuildID in debian/seqkit/usr/lib/seqkit/benchmark
dh_makeshlibs -a -O--buildsystem=golang -O--builddirectory=build
dh_shlibdeps -a -O--buildsystem=golang -O--builddirectory=build
dh_installdeb -O--buildsystem=golang -O--builddirectory=build
dh_golang -O--buildsystem=golang -O--builddirectory=build
dh_gencontrol -O--buildsystem=golang -O--builddirectory=build
dpkg-gencontrol: warning: Depends field of package seqkit-examples: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined
dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined
dh_md5sums -O--buildsystem=golang -O--builddirectory=build
dh_builddeb -O--buildsystem=golang -O--builddirectory=build
dpkg-deb: building package 'seqkit' in '../seqkit_2.9.0+ds-1_arm64.deb'.
dpkg-deb: building package 'seqkit-dbgsym' in '../seqkit-dbgsym_2.9.0+ds-1_arm64.deb'.
dpkg-deb: building package 'seqkit-examples' in '../seqkit-examples_2.9.0+ds-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../seqkit_2.9.0+ds-1_arm64.buildinfo
dpkg-genchanges --build=binary -O../seqkit_2.9.0+ds-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1507591 and its subdirectories
I: Current time: Sat Jan 11 05:55:01 -12 2025
I: pbuilder-time-stamp: 1736618101
Sat Jan 11 17:55:05 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Sat Jan 11 17:55:05 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Sat Jan 11 18:02:12 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Sat Jan 11 18:02:13 UTC 2025 I: seqkit_2.9.0+ds-1_arm64.changes:
Format: 1.8
Date: Thu, 09 Jan 2025 19:58:02 +0800
Source: seqkit
Binary: seqkit seqkit-dbgsym seqkit-examples
Architecture: arm64 all
Version: 2.9.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Maytham Alsudany <maytha8thedev@gmail.com>
Description:
seqkit - cross-platform and ultrafast toolkit for FASTA/Q file manipulatio
seqkit-examples - examples for seqkit: toolkit for FASTA/Q file manipulation
Changes:
seqkit (2.9.0+ds-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.9.0
Checksums-Sha1:
8c9e86240a1bd8de1279cb2498a6b4dc6dbef9fd 4497344 seqkit-dbgsym_2.9.0+ds-1_arm64.deb
1e1261a785ac582b07a63f0dea39bd7ad5ec8b93 39612544 seqkit-examples_2.9.0+ds-1_all.deb
c40ae222585684fbf83cd6918697cd7769d1e5f1 10873 seqkit_2.9.0+ds-1_arm64.buildinfo
2fb4baa7346a4f11f1fbb24d87ee1751cfd15e83 6382956 seqkit_2.9.0+ds-1_arm64.deb
Checksums-Sha256:
e462709b2e26296b16d2bc5bfa266954fa0d3345e039af14ffecef45ce35c8be 4497344 seqkit-dbgsym_2.9.0+ds-1_arm64.deb
4839937841a7833d8a666829f10aa6339942997b7977c53aead91ac9316bf6a5 39612544 seqkit-examples_2.9.0+ds-1_all.deb
88d6ee58bcde19121163e8b449e2f3c7dd57a5927877e2516d40761580987e0b 10873 seqkit_2.9.0+ds-1_arm64.buildinfo
19fea6814a678765b88fa71d16669d6b3ded6a79851fb65515c98e84e85abbe7 6382956 seqkit_2.9.0+ds-1_arm64.deb
Files:
9c4638baf9d7669466c9f51611801ca9 4497344 debug optional seqkit-dbgsym_2.9.0+ds-1_arm64.deb
b30e67c3c2e87e8609e51b43387c9f77 39612544 science optional seqkit-examples_2.9.0+ds-1_all.deb
686bd8386667b333739737ec79d35a3f 10873 science optional seqkit_2.9.0+ds-1_arm64.buildinfo
aea26b04289ea4c0ed5ec2a59e6bea8d 6382956 science optional seqkit_2.9.0+ds-1_arm64.deb
Sat Jan 11 18:02:14 UTC 2025 I: diffoscope 284 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_19-53069.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/seqkit_2.9.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/seqkit_2.9.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/seqkit_2.9.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/b1/seqkit_2.9.0+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ouySAX3V/b2/seqkit_2.9.0+ds-1_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.784s)
0.784s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.442s)
0.442s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 1.150s
CPU time consumed: 1.150s
Sat Jan 11 18:02:15 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists.
Sat Jan 11 18:02:15 UTC 2025 I: seqkit from trixie built successfully and reproducibly on arm64.
Sat Jan 11 18:02:16 UTC 2025 I: Submitting .buildinfo files to external archives:
Sat Jan 11 18:02:16 UTC 2025 I: Submitting 12K b1/seqkit_2.9.0+ds-1_arm64.buildinfo.asc
Sat Jan 11 18:02:17 UTC 2025 I: Submitting 12K b2/seqkit_2.9.0+ds-1_arm64.buildinfo.asc
Sat Jan 11 18:02:18 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Jan 11 18:02:18 UTC 2025 I: Done submitting .buildinfo files.
Sat Jan 11 18:02:18 UTC 2025 I: Removing signed seqkit_2.9.0+ds-1_arm64.buildinfo.asc files:
removed './b1/seqkit_2.9.0+ds-1_arm64.buildinfo.asc'
removed './b2/seqkit_2.9.0+ds-1_arm64.buildinfo.asc'