Thu Nov 14 05:22:32 UTC 2024 I: starting to build seqan-needle/trixie/arm64 on jenkins on '2024-11-14 05:22' Thu Nov 14 05:22:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/63497/console.log Thu Nov 14 05:22:32 UTC 2024 I: Downloading source for trixie/seqan-needle=1.0.3+ds-1 --2024-11-14 05:22:32-- http://deb.debian.org/debian/pool/main/s/seqan-needle/seqan-needle_1.0.3%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘seqan-needle_1.0.3+ds-1.dsc’ 0K .. 100% 324M=0s 2024-11-14 05:22:33 (324 MB/s) - ‘seqan-needle_1.0.3+ds-1.dsc’ saved [2319/2319] Thu Nov 14 05:22:33 UTC 2024 I: seqan-needle_1.0.3+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-needle Binary: seqan-needle, seqan-needle-doc Architecture: any all Version: 1.0.3+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/needle Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/seqan-needle Vcs-Git: https://salsa.debian.org/med-team/seqan-needle.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, cmake, git, libcereal-dev, libgtest-dev, libseqan3-dev Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen Package-List: seqan-needle deb science optional arch=any seqan-needle-doc deb doc optional arch=all Checksums-Sha1: 3560c1218bcab7c03a614bc63ac74fe26b24a08a 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 631215f2ca4b9799372fa5cd86618408e90d8528 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz Checksums-Sha256: c26e8be818b237b5d1dd5c04d2f308413d80ab7176521385e4b663e4eb44f75c 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 11002794c7a80c08d26309ab74244809253de5c0c7354f4d30fa58d8adbe2e88 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz Files: 50a8401714f027bb344a49b5ead1acc4 14656416 seqan-needle_1.0.3+ds.orig.tar.xz 8c7ded76b128b4404bedc14d39fafef5 6296 seqan-needle_1.0.3+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmcx9nsACgkQPCZ2P2xn 5uIHxxAAltOK2CfvMOAFA/XzUwd0t7R2SCOXxQpezG19Fyy9Q+5OaIrHmNGPWov2 9sGmZ159YjPsFE6rXtOdABfmnZuCkhXfyhLz78IlBLazm0O4RsuY7LX7w/yB2gmz Ygx286XNmRRd8/UbFLLDtrfJgKqnIp0h7b0o8yz0cAHVmoRTiktSEmointrXu6V7 kbUrV0FG5vM54RF0IstZS30fT6hfxuFa1fJjy1wlN93cqdCuvEih3baeXyuMmUfE /fM3Cn6t853uF7Bszp2ygn8MpGmdu16UldAGpVrh4AkGjAkFW6i4w0JU4EiritMZ vZuxP/r62rDWY1pdj717TW3FMFKT7LyVFcTvJPJwiz4ASbVjV70gkYNR2mgTBRuX JSAK5YM+3kQjk1fNva1YLiDCSbUVeOTa0cuKlKGaZzNyMMVmkH8fXscam7FWI016 cPRLwGOm5hvZPl8b4ACN0KeA3ZG7pfNWVmqz1GYNzQN5kUGSxoC+g8ihUi6EV0nV LfxCn/w12+NAi4MtbmiETQ/H5zjXnX9XWC3ZIWIH9wTP1+nTiuuhpU9Jy08Tduut rRpmppeJmoeqY+YoAxmPutxqVS9JlT7gOxJQ3Il0Evegos6r8apteItE8W4wVlWM x92gph95tGQK/J1mhkCR/Wc8vIBWd5SGVVBXEOXVL/uITEMQNXU= =b6Iq -----END PGP SIGNATURE----- Thu Nov 14 05:22:33 UTC 2024 I: Checking whether the package is not for us Thu Nov 14 05:22:33 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu Nov 14 05:22:33 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu Nov 14 05:25:11 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 16 23:45:35 -12 2025 I: pbuilder-time-stamp: 1765971935 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.3+ds-1.dsc] I: copying [./seqan-needle_1.0.3+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.3+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 11 12:20:11 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.3+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.3+ds dpkg-source: info: unpacking seqan-needle_1.0.3+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.3+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-seqan3 dpkg-source: info: applying privacy dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/444185/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c8b287d8aaee4167b3f83edcb3c75cc6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='444185' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/pbuilderrc_EWIn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/b1 --logfile b1/build.log seqan-needle_1.0.3+ds-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/444185/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20091 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx openssh-client psmisc publicsuffix wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After unpacking 483 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 14 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.5-1 [2223 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.5-1 [9403 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.3-1 [23.3 MB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libclang-cpp19 arm64 1:19.1.3-1 [12.0 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libclang1-19 arm64 1:19.1.3-1 [6860 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libfmt10 arm64 10.1.1+ds1-4 [121 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 doxygen arm64 1.9.8+ds-2+b3 [4515 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 liberror-perl all 0.17029-2 [29.0 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 git-man all 1:2.45.2-1 [2158 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 git arm64 1:2.45.2-1 [8513 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 googletest all 1.15.2-1 [514 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libgtest-dev arm64 1.15.2-1 [245 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libseqan3-dev all 3.3.0+ds-2 [758 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Fetched 103 MB in 1s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20091 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... 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Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up doxygen (1.9.8+ds-2+b3) ... Setting up git (1:2.45.2-1) ... Setting up cmake (3.30.5-1) ... Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_configure --arch -- -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.30/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.30/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.3.0 -- Found Git: /usr/bin/git (found version "2.45.2") -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (6.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: No configuration needed for the docs I: No configuration needed for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 tests make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/CMakeFiles 31 make -f CMakeFiles/Makefile2 test/CMakeFiles/tests.dir/all make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp [ 9%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 "/usr/bin/gcc-ar-14" qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/estimate.cpp.o CMakeFiles/needle_lib.dir/ibf.cpp.o "/usr/bin/gcc-ranlib-14" ../lib/libneedle_lib.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 9%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DNEEDLE_DATE=\"2024-11-07\" -DNEEDLE_VERSION=\"1.0.3\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp [ 16%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/insert_delete_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/delete_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 19%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build [ 22%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build [ 25%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o [ 29%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp [ 35%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o [ 35%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 38%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 41%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp [ 45%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o [ 48%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp [ 51%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp [ 54%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp [ 58%] Linking CXX executable ../../needle_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o ../../needle_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 61%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 64%] Linking CXX executable ../../ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 [ 64%] Built target needle_options_test make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 67%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 67%] Built target minimiser_options_test [ 70%] Linking CXX executable ../../count_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 70%] Built target ibf_options_test [ 74%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 77%] Linking CXX executable ../../delete_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 80%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 83%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 87%] Linking CXX executable ../../estimate_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [ 87%] Built target count_options_test [ 90%] Linking CXX executable ../../ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 93%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [ 96%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a [100%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target delete_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target estimate_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target insert_options_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target count_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target ibfmin_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target estimate_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target ibf_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target insert_delete_test make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target minimiser_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[5]: Nothing to be done for 'test/CMakeFiles/tests.dir/build'. make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' [100%] Built target tests make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' doxygen doc/doxygen_cfg warning: Tag 'HTML_TIMESTAMP' at line 224 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 260 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 295 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 364 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 365 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 393 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_83_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=345 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules execute_after_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: Not running tests for the docs I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example 1: [ OK ] count_test.small_example (1 ms) 1: [ RUN ] count_test.small_example_paired 1: [ OK ] count_test.small_example_paired (1 ms) 1: [ RUN ] count_test.small_example_exclude 1: [ OK ] count_test.small_example_exclude (0 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) 1: [----------] 4 tests from count_test (4 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 1 test suite ran. (4 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds 2: [ OK ] delete_test.no_given_thresholds (2 ms) 2: [----------] 1 test from delete_test (2 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf 2: [ OK ] insert_test.ibf (0 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds 2: [ OK ] insert_test.ibf_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.ibf_delete 2: [ OK ] insert_test.ibf_delete (1 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold 2: [ OK ] insert_test.ibf_delete_no_given_threshold (1 ms) 2: [ RUN ] insert_test.ibfmin 2: [ OK ] insert_test.ibfmin (0 ms) 2: [ RUN ] insert_test.ibfmin_delete 2: [ OK ] insert_test.ibfmin_delete (0 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds 2: [ OK ] insert_test.ibfmin_no_given_thresholds (0 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds 2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (0 ms) 2: [----------] 8 tests from insert_test (7 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (9 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example 3: [ OK ] estimate_test.small_example (2 ms) 3: [ RUN ] estimate_test.small_example_uncompressed 3: [ OK ] estimate_test.small_example_uncompressed (0 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found 3: [ OK ] estimate_test.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level 3: [ OK ] estimate_test.small_example_different_expressions_per_level (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (1 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds 4: [ OK ] ibf_test.given_expression_thresholds (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file 4: [ OK ] ibf_test.given_expression_thresholds_include_file (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file 4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws 4: [ OK ] ibf_test.throws (0 ms) 4: [ RUN ] ibf_test.given_cutoffs 4: [ OK ] ibf_test.given_cutoffs (0 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds 5: [ OK ] ibfmin_test.given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (5 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome 5: [ OK ] ibfmin_test.expression_thresholds_by_genome (1 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (4 ms) 5: [ RUN ] ibfmin_test.different_shape 5: [ OK ] ibfmin_test.different_shape (1 ms) 5: [----------] 6 tests from ibfmin_test (13 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 6 tests from 1 test suite ran. (13 ms total) 5: [ PASSED ] 6 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example 6: [ OK ] minimiser_test.small_example (2 ms) 6: [ RUN ] minimiser_test.small_example_different_shape 6: [ OK ] minimiser_test.small_example_different_shape (0 ms) 6: [ RUN ] minimiser_test.small_example_samplewise 6: [ OK ] minimiser_test.small_example_samplewise (0 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize 6: [ OK ] minimiser_test.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser_test.small_example_two_threads 6: [ OK ] minimiser_test.small_example_two_threads (3 ms) 6: [ RUN ] minimiser_test.small_example_include 6: [ OK ] minimiser_test.small_example_include (0 ms) 6: [ RUN ] minimiser_test.small_example_exclude 6: [ OK ] minimiser_test.small_example_exclude (0 ms) 6: [ RUN ] minimiser_test.small_example_shape 6: [ OK ] minimiser_test.small_example_shape (0 ms) 6: [----------] 8 tests from minimiser_test (8 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (9 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (8 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (9 ms) 7: [----------] 2 tests from needle_options_test (17 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (17 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 8: [ OK ] ibf_options_test.ibf_no_options (15 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: [ OK ] ibf_options_test.ibf_fail_no_argument (13 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (11 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 9: [ OK ] insert_options_test.insert_fail_no_argument (8 ms) 9: [ RUN ] insert_options_test.with_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (8 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.fail_no_argument (13 ms) 10: [ RUN ] minimiser_options_test.with_arguments 1/13 Test #1: count_test ....................... Passed 0.07 sec 2/13 Test #2: insert_delete_test ............... Passed 0.06 sec 3/13 Test #5: ibfmin_test ...................... Passed 0.06 sec 4/13 Test #6: minimiser_test ................... Passed 0.05 sec 5/13 Test #7: needle_options_test .............. Passed 0.05 sec test 13 Start 13: delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 8: [ OK ] ibf_options_test.ibf_fail_contradiction (14 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (10 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 10: [ OK ] minimiser_options_test.with_arguments (23 ms) 10: [ RUN ] minimiser_options_test.cutoff 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 11: [ OK ] estimate_options_test.no_options (10 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 11: [ OK ] estimate_options_test.fail_no_argument (7 ms) 11: [ RUN ] estimate_options_test.with_argument 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 12: [ OK ] count_options_test.no_options (8 ms) 12: [ RUN ] count_options_test.fail_no_argument 12: [ OK ] count_options_test.fail_no_argument (8 ms) 12: [ RUN ] count_options_test.with_arguments 12: [ OK ] count_options_test.with_arguments (13 ms) 12: [ RUN ] count_options_test.multithreads 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (9 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 12: [ OK ] count_options_test.multithreads (10 ms) 12: [ RUN ] count_options_test.paired 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (7 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 13: [ OK ] delete_options_test.delete_no_options (9 ms) 13: [ RUN ] delete_options_test.with_argument 12: [ OK ] count_options_test.paired (9 ms) 12: [----------] 5 tests from count_options_test (50 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 10: [ OK ] minimiser_options_test.cutoff (19 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 12: [ OK ] genome_options_test.no_options (10 ms) 12: [ RUN ] genome_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.multiple_sample (9 ms) 10: [ RUN ] minimiser_options_test.multithreads 12: [ OK ] genome_options_test.fail_no_argument (10 ms) 12: [ RUN ] genome_options_test.with_arguments 12: [ OK ] genome_options_test.with_arguments (15 ms) 12: [----------] 3 tests from genome_options_test (36 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (86 ms total) 12: [ PASSED ] 8 tests. 6/13 Test #12: count_options_test ............... Passed 0.10 sec 10: [ OK ] minimiser_options_test.multithreads (31 ms) 10: [ RUN ] minimiser_options_test.paired 10: [ OK ] minimiser_options_test.paired (10 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 10: [ OK ] minimiser_options_test.invalid_argument (9 ms) 10: [----------] 8 tests from minimiser_options_test (126 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (126 ms total) 10: [ PASSED ] 8 tests. 7/13 Test #10: minimiser_options_test ........... Passed 0.14 sec 4: [ OK ] ibf_test.different_file_sizes (1093 ms) 4: [----------] 8 tests from ibf_test (1098 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (1098 ms total) 4: [ PASSED ] 8 tests. 8/13 Test #4: ibf_test ......................... Passed 1.11 sec 8: [ OK ] ibf_options_test.ibf_with_argument (1163 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 3: [ OK ] estimate_test.example (1796 ms) 3: [ RUN ] estimate_test.example_multiple_threads 11: [ OK ] estimate_options_test.with_argument (2173 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 9: [ OK ] insert_options_test.with_argument (2402 ms) 9: [----------] 3 tests from insert_options_test (2422 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (2422 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: insert_options_test .............. Passed 2.43 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (1207 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 3: [ OK ] estimate_test.example_multiple_threads (1626 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (1153 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (6 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (7 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (7 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 13: [ OK ] delete_options_test.with_argument (3583 ms) 13: [----------] 2 tests from delete_options_test (3593 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (3593 ms total) 13: [ PASSED ] 2 tests. 10/13 Test #13: delete_options_test .............. Passed 3.62 sec 8: [ OK ] ibf_options_test.more_hash_functions (7 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (6 ms) 8: [----------] 19 tests from ibf_options_test (3669 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (3669 ms total) 8: [ PASSED ] 19 tests. 11/13 Test #8: ibf_options_test ................. Passed 3.68 sec 11: [ OK ] estimate_options_test.with_argument_normalization_method (1867 ms) 11: [ RUN ] estimate_options_test.with_argument_out 3: [ OK ] estimate_test.example_different_expressions_per_level (833 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads 3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (819 ms) 3: [----------] 10 tests from estimate_test (5080 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (5081 ms total) 3: [ PASSED ] 10 tests. 12/13 Test #3: estimate_test .................... Passed 5.09 sec 11: [ OK ] estimate_options_test.with_argument_out (1738 ms) 11: [----------] 5 tests from estimate_options_test (5796 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (5796 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: estimate_options_test ............ Passed 5.81 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 5.85 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' rm -Rf obj-*/test make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.30/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.30/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.3.0 -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- CPM: Using local package GTest@1.15.2 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (2.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-needle-1.0.3+ds/debian/tmp/usr/bin/needle make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_arm64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_arm64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/444185 and its subdirectories I: Current time: Tue Dec 16 23:48:09 -12 2025 I: pbuilder-time-stamp: 1765972089 Thu Nov 14 05:25:12 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Nov 14 05:25:12 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Nov 14 05:31:13 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Nov 14 05:31:14 UTC 2024 I: seqan-needle_1.0.3+ds-1_arm64.changes: Format: 1.8 Date: Mon, 11 Nov 2024 11:24:30 +0100 Source: seqan-needle Binary: seqan-needle seqan-needle-dbgsym seqan-needle-doc Architecture: arm64 all Version: 1.0.3+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: seqan-needle - pre-filter for the counting of very large collections of nucleoti seqan-needle-doc - HTML documentation for seqan-needle and its APIs Changes: seqan-needle (1.0.3+ds-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.0 (routine-update) * Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update) * Refreshed patches * d/rules: ensure that the tests are built Checksums-Sha1: d1de1bcffbeb9c5b6e16caafcce8f8919cbe0f6b 5195116 seqan-needle-dbgsym_1.0.3+ds-1_arm64.deb 8d4ae13ca69eba323e5f19f6402769c45590c407 116208 seqan-needle-doc_1.0.3+ds-1_all.deb 9012d2e55f15254b244c3b1ef0a46b0c59727607 7102 seqan-needle_1.0.3+ds-1_arm64.buildinfo e7e6c0779189a7d734d02f77f479f87f38b27aeb 303220 seqan-needle_1.0.3+ds-1_arm64.deb Checksums-Sha256: 79f908de222229b5c84fe36f2918fd73230048be5419d52dbd6bef50e1fd2528 5195116 seqan-needle-dbgsym_1.0.3+ds-1_arm64.deb 5da92c4d42ea26c874714830f48c41ceefadd5b472cfa3f04c8f139b83423019 116208 seqan-needle-doc_1.0.3+ds-1_all.deb 61cde36b210e09b1317b87a9b295464be45454b6875ab90e9268cb7d53eecfca 7102 seqan-needle_1.0.3+ds-1_arm64.buildinfo 9e293cb4830e76b1d882a0cd5be56a63ac5b8e2ad9dfae2498be0713dce06cd8 303220 seqan-needle_1.0.3+ds-1_arm64.deb Files: 93459388ee878302a91ec946562ce95e 5195116 debug optional seqan-needle-dbgsym_1.0.3+ds-1_arm64.deb 410befb172eb1121510483aa29cf5bec 116208 doc optional seqan-needle-doc_1.0.3+ds-1_all.deb b9210949fada616af3d1da29ed43237d 7102 science optional seqan-needle_1.0.3+ds-1_arm64.buildinfo d33f73effa1276227c8591dad6661dcf 303220 science optional seqan-needle_1.0.3+ds-1_arm64.deb Thu Nov 14 05:31:15 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_3-63497.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/seqan-needle_1.0.3+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/seqan-needle_1.0.3+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/seqan-needle_1.0.3+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/b1/seqan-needle_1.0.3+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.AYfYrVZ2/b2/seqan-needle_1.0.3+ds-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.435s) 0.435s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.076s) 0.076s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 768ms CPU time consumed: 768ms Thu Nov 14 05:31:16 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 14 05:31:16 UTC 2024 I: seqan-needle from trixie built successfully and reproducibly on arm64. Thu Nov 14 05:31:17 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 14 05:31:17 UTC 2024 I: Submitting 8.0K b1/seqan-needle_1.0.3+ds-1_arm64.buildinfo.asc Thu Nov 14 05:31:18 UTC 2024 I: Submitting 8.0K b2/seqan-needle_1.0.3+ds-1_arm64.buildinfo.asc Thu Nov 14 05:31:19 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 14 05:31:19 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 14 05:31:19 UTC 2024 I: Removing signed seqan-needle_1.0.3+ds-1_arm64.buildinfo.asc files: removed './b1/seqan-needle_1.0.3+ds-1_arm64.buildinfo.asc' removed './b2/seqan-needle_1.0.3+ds-1_arm64.buildinfo.asc'