Thu Oct 31 05:03:09 UTC 2024 I: starting to build savvy/trixie/arm64 on jenkins on '2024-10-31 05:02' Thu Oct 31 05:03:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/44409/console.log Thu Oct 31 05:03:09 UTC 2024 I: Downloading source for trixie/savvy=2.1.0-3 --2024-10-31 05:03:10-- http://deb.debian.org/debian/pool/main/s/savvy/savvy_2.1.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2180 (2.1K) [text/prs.lines.tag] Saving to: ‘savvy_2.1.0-3.dsc’ 0K .. 100% 277M=0s 2024-10-31 05:03:10 (277 MB/s) - ‘savvy_2.1.0-3.dsc’ saved [2180/2180] Thu Oct 31 05:03:10 UTC 2024 I: savvy_2.1.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: savvy Binary: savvy-util, libsavvy-dev Architecture: any all Version: 2.1.0-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/statgen/savvy Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/savvy Vcs-Git: https://salsa.debian.org/med-team/savvy.git Build-Depends: debhelper-compat (= 13), cmake, libshrinkwrap-dev, libzstd-dev, zlib1g-dev Package-List: libsavvy-dev deb libdevel optional arch=all savvy-util deb science optional arch=any Checksums-Sha1: 8e53229d9f4af6044309c299e0d32bd431e6a38b 246051 savvy_2.1.0.orig.tar.gz c0b4440490911a5c7a044f39d97e89e174e35ff5 3188 savvy_2.1.0-3.debian.tar.xz Checksums-Sha256: 83ebd88c097799b3bbf771dc8ebf6892797ca7a1f49c2d1665d52cfc1bf9e1de 246051 savvy_2.1.0.orig.tar.gz c763954ad48321ef6daf20cdc61f736cb0f7e158e5d6ac3fdc14e916094f9963 3188 savvy_2.1.0-3.debian.tar.xz Files: f313bdd6a1958ee1fce6815fa803a112 246051 savvy_2.1.0.orig.tar.gz cd60db708ea37ab789b4f0617d0ebc04 3188 savvy_2.1.0-3.debian.tar.xz Dgit: bf75e14d264295cdeb0606841a2026b3787849d4 debian archive/debian/2.1.0-3 https://git.dgit.debian.org/savvy -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaydzwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrFKA/7BFbG4tp3Z1fd0pIs3BYrqIp0EMdl y8C1dZ8MPpKVzFGSLj/NMAo4qF6/wdrH/y9OzTMX+X0Cp89kb/B9jWoTrF4xPX7m qaSJmw7hn1jr54uW2A4czzYlk1OAAvn8qwtxlsA105mAs42QSuGEzkKuAG1jryr/ DPEivRpwkrPMLYD7vt4Xfco2d/lfI9oUESCLyGqRQNXit4QHi1YaCxQHyzQ2DNlz vmzCgVlB5yDppKsRZAM1ZGNTOMm79ElYc167Iu1NrAGuWcy4zTNgs/vmFZN7ICCe ceXjID685OPKPaesFUzAsfWPquUM/WEEGOR5bQl7UBO48wDVdMmCoMT60fP06fdb Q29Sxm7Z1DaXNuYtYcKY+TJPpGxA9lIXNZva8DKSbRzFFjEYNnGIJdfg9pft3x7g CEg9I7oAnKdNEBKtJ+DwxIlt072EDWMDMdaQ8RS0ff9aVUKOfXqMOjpIRb61nvPZ kHKQlFUcDsJ+hpUjiFUsbZtADS4lVBDydv6JlodYXYNn1yTQo3U00nGdpw+LFij1 Y43Ud1W/S8bkHaiRjXfBT5/n/6uIz9OUQYDgwEvFFQYnXsCwkNt82JntaQruLT6f JUhHGCAsxbfeqj8fahAs9kGdpDufMRoLvavktRwS/laua+WMa0meAKOizZqSp8Ge iR6BW79z/aLw9es= =4xQP -----END PGP SIGNATURE----- Thu Oct 31 05:03:10 UTC 2024 I: Checking whether the package is not for us Thu Oct 31 05:03:10 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu Oct 31 05:03:10 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu Oct 31 05:04:44 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 2 23:26:12 -12 2025 I: pbuilder-time-stamp: 1764761172 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [savvy_2.1.0-3.dsc] I: copying [./savvy_2.1.0.orig.tar.gz] I: copying [./savvy_2.1.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Aug 6 19:19:24 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./savvy_2.1.0-3.dsc: no acceptable signature found dpkg-source: info: extracting savvy in savvy-2.1.0 dpkg-source: info: unpacking savvy_2.1.0.orig.tar.gz dpkg-source: info: unpacking savvy_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_zstd.patch dpkg-source: info: applying remove-arch-check.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1984324/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='2662d6e27f964a67a5d900737772619e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1984324' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/pbuilderrc_C3jW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/b1 --logfile b1/build.log savvy_2.1.0-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1984324/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libshrinkwrap-dev, libzstd-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20067 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libshrinkwrap-dev; however: Package libshrinkwrap-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libshrinkwrap-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 35.9 MB of archives. After unpacking 139 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.5-1 [2223 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.5-1 [9403 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libshrinkwrap-dev all 1.2.0-2 [12.3 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 35.9 MB in 0s (138 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20067 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.30.5-1_all.deb ... Unpacking cmake-data (3.30.5-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../20-libarchive13t64_3.7.4-1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b5_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b5) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/savvy-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../savvy_2.1.0-3_source.changes dpkg-buildpackage: info: source package savvy dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' make -f CMakeFiles/sav.dir/build.make CMakeFiles/sav.dir/depend make[3]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/savvy-2.1.0 /build/reproducible-path/savvy-2.1.0 /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu/CMakeFiles/sav.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' make -f CMakeFiles/sav.dir/build.make CMakeFiles/sav.dir/build make[3]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' [ 8%] Building CXX object CMakeFiles/sav.dir/src/sav/main.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/main.cpp.o -MF 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-MT CMakeFiles/sav.dir/src/sav/rehead.cpp.o -MF CMakeFiles/sav.dir/src/sav/rehead.cpp.o.d -o CMakeFiles/sav.dir/src/sav/rehead.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp [ 83%] Building CXX object CMakeFiles/sav.dir/src/sav/stat.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/sort.cpp.o -MF CMakeFiles/sav.dir/src/sav/sort.cpp.o.d -o CMakeFiles/sav.dir/src/sav/sort.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/stat.cpp.o -MF CMakeFiles/sav.dir/src/sav/stat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/stat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp [ 91%] Building CXX object CMakeFiles/sav.dir/src/sav/utility.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/utility.cpp.o -MF CMakeFiles/sav.dir/src/sav/utility.cpp.o.d -o CMakeFiles/sav.dir/src/sav/utility.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/utility.cpp [100%] Linking CXX executable sav /usr/bin/cmake -E cmake_link_script CMakeFiles/sav.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/sav.dir/src/sav/main.cpp.o CMakeFiles/sav.dir/src/sav/concat.cpp.o CMakeFiles/sav.dir/src/sav/export.cpp.o CMakeFiles/sav.dir/src/sav/head.cpp.o CMakeFiles/sav.dir/src/sav/import.cpp.o CMakeFiles/sav.dir/src/sav/index.cpp.o CMakeFiles/sav.dir/src/sav/merge.cpp.o CMakeFiles/sav.dir/src/sav/rehead.cpp.o CMakeFiles/sav.dir/src/sav/sort.cpp.o CMakeFiles/sav.dir/src/sav/stat.cpp.o CMakeFiles/sav.dir/src/sav/utility.cpp.o -o sav -lzstd -lz make[3]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' [100%] Built target sav make[2]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/savvy-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/compressed_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/writer.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/vcf_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/varint.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_iterator.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_group_iterator.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/utility.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/ublas_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/typed_value.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sparse_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/site_info.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/savvy.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav1.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sample_subset.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/s1r.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/region.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/portable_endian.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/pbwt.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/m3vcf_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/logging.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/file.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/endianness.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/eigen3_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/dictionary.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/data_format.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/csi.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/armadillo_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/allele_status.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/bin/sav -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-targets.cmake -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-config.cmake -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-config-version.cmake make[1]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'savvy-util-dbgsym' in '../savvy-util-dbgsym_2.1.0-3_arm64.deb'. dpkg-deb: building package 'savvy-util' in '../savvy-util_2.1.0-3_arm64.deb'. dpkg-deb: building package 'libsavvy-dev' in '../libsavvy-dev_2.1.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../savvy_2.1.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../savvy_2.1.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1984324 and its subdirectories I: Current time: Tue Dec 2 23:27:39 -12 2025 I: pbuilder-time-stamp: 1764761259 Thu Oct 31 05:04:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Oct 31 05:04:45 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Oct 31 05:08:07 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Oct 31 05:08:08 UTC 2024 I: savvy_2.1.0-3_arm64.changes: Format: 1.8 Date: Tue, 06 Aug 2024 20:55:26 +0200 Source: savvy Binary: libsavvy-dev savvy-util savvy-util-dbgsym Architecture: all arm64 Version: 2.1.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libsavvy-dev - C++ interface for the SAV file format savvy-util - conversion tool for SAV file format Closes: 1075487 Changes: savvy (2.1.0-3) unstable; urgency=medium . * gcc-14.patch: new: fix an improper assignment in an assert. (Closes: #1075487) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: a034faaa4ba2abe48f69dc084e66ece695fca851 73804 libsavvy-dev_2.1.0-3_all.deb 6db0f2b18d42706be23816c500bdd39525927665 7769764 savvy-util-dbgsym_2.1.0-3_arm64.deb 2740ab839246ab2aaf8a1569b8b178027057ba1c 206292 savvy-util_2.1.0-3_arm64.deb befbfa393b6986dd1929a391410d62aa73108d95 6237 savvy_2.1.0-3_arm64.buildinfo Checksums-Sha256: 2b6899f28c534c5e83bedc0ed3435857dc35f3b868f6d95b41d3a45ead45efee 73804 libsavvy-dev_2.1.0-3_all.deb 467363a649651001c4e4c955060867dd86170dedb14a42b0319ccab2166f9c71 7769764 savvy-util-dbgsym_2.1.0-3_arm64.deb ae5b173cfae2179992fa67314be006e480466072aa255ccb9009bca5995567d8 206292 savvy-util_2.1.0-3_arm64.deb 82467a5a8db529c73fdcc6e0348b27f448c99c16d801e78b20bad8fbe4bc4e2e 6237 savvy_2.1.0-3_arm64.buildinfo Files: 5cee7f75ae3aff9e2585b6ea45a109dd 73804 libdevel optional libsavvy-dev_2.1.0-3_all.deb 8cdf868099c22397302c6f6a1b133773 7769764 debug optional savvy-util-dbgsym_2.1.0-3_arm64.deb 2b0c8ef3cc0ef174225f06b1874e4979 206292 science optional savvy-util_2.1.0-3_arm64.deb 1618b179bc35a7f8c632631c51ddb169 6237 science optional savvy_2.1.0-3_arm64.buildinfo Thu Oct 31 05:08:09 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_13-44409.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/savvy_2.1.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/savvy_2.1.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/savvy_2.1.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/b1/savvy_2.1.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bm9SZ6Nb/b2/savvy_2.1.0-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.475s) 0.475s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.101s) 0.101s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 822ms CPU time consumed: 819ms Thu Oct 31 05:08:10 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 31 05:08:10 UTC 2024 I: savvy from trixie built successfully and reproducibly on arm64. Thu Oct 31 05:08:11 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Oct 31 05:08:11 UTC 2024 I: Submitting 8.0K b1/savvy_2.1.0-3_arm64.buildinfo.asc Thu Oct 31 05:08:15 UTC 2024 I: Submitting 8.0K b2/savvy_2.1.0-3_arm64.buildinfo.asc Thu Oct 31 05:08:17 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Oct 31 05:08:17 UTC 2024 I: Done submitting .buildinfo files. Thu Oct 31 05:08:17 UTC 2024 I: Removing signed savvy_2.1.0-3_arm64.buildinfo.asc files: removed './b1/savvy_2.1.0-3_arm64.buildinfo.asc' removed './b2/savvy_2.1.0-3_arm64.buildinfo.asc'