Fri Apr 26 00:22:09 UTC 2024 I: starting to build r-bioc-variantannotation/trixie/arm64 on jenkins on '2024-04-26 00:21' Fri Apr 26 00:22:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/15535/console.log Fri Apr 26 00:22:09 UTC 2024 I: Downloading source for trixie/r-bioc-variantannotation=1.48.1-1 --2024-04-26 00:22:09-- http://deb.debian.org/debian/pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.48.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2587 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-variantannotation_1.48.1-1.dsc’ 0K .. 100% 253M=0s 2024-04-26 00:22:09 (253 MB/s) - ‘r-bioc-variantannotation_1.48.1-1.dsc’ saved [2587/2587] Fri Apr 26 00:22:09 UTC 2024 I: r-bioc-variantannotation_1.48.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-variantannotation Binary: r-bioc-variantannotation Architecture: any Version: 1.48.1-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/VariantAnnotation/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-rsamtools, r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-biostrings, r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev | libcurl4-dev Package-List: r-bioc-variantannotation deb gnu-r optional arch=any Checksums-Sha1: 70c1ec99d741dbb32bc6ce25eef242dc0cdf41dd 1886512 r-bioc-variantannotation_1.48.1.orig.tar.gz 27464073d1f480def0c2dbce807fa62f878b5a47 7900 r-bioc-variantannotation_1.48.1-1.debian.tar.xz Checksums-Sha256: 2af6d1164152f9722fc83cfe16cf43e1a83ba5c9d133d9663175b0ac779e3d51 1886512 r-bioc-variantannotation_1.48.1.orig.tar.gz e051c58f3ed58f8a0e61142e226a059c8e02c71ae1e0ad472bb60b8905aaccf2 7900 r-bioc-variantannotation_1.48.1-1.debian.tar.xz Files: 39b6f4907fe37495a903c338e6d4cc73 1886512 r-bioc-variantannotation_1.48.1.orig.tar.gz 426993cec6182545dabd4954316fa108 7900 r-bioc-variantannotation_1.48.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVproEOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHa5w//Vx0Y2fDfLt6nwzNjC+eJ+FvFOhjxI997vKK8 kBnuocbnvX9d+GEpB50wB86lhi/jB1eY4OoppGZ2mqlg/y3fCSpU47wBZIJD0LfE ayn25vGf7FqroMZpq2V9ZKSFWpdUrhOfEDdFjj4Z0vv5/rua9BHjBk/wtvQUyOkn l009PwvkZIBLlVZmHYltpR41BOnNbqvOKy/ONh1VLtI0gIKOL+Ts6Khz5cXfUZGp 64oX5IzQeroPFN0zm/HoSRuriJdkD+etS4oP6EZzq5I0Rh7+4WlMx5Em6s0VAKvQ mQtIGVtGaoliaY47NAJscUw2YVS06zUHeWx0gotw7zgtUItX/vyqHojOKjqK4JAH 5muWfjPgzXYlnnUDbRsnbkV8p3PfkKjCRgwnKE633A7o+p8fM2nWgGpKYiJtiej7 7Ko3Mt8+q64m0W1zT1fuSj0cj/1hM58Vxbm5sAdU3oeP0q/EbX4aa/mPSj8Uijf6 h90Kl/I0l8zFS5WTASQ1uxHQuwV+59Hq6eId054gKB5w2ZxvoKwCqJkmOEMEAZjD UALOeFJTFmf7yn8SHQOOH6dmdXii4ah9h3B1okL7duwXapA1aq51vC/HDzVkSXAy bDjwMDuLxPHM0DrCUhDGB/YDkGpgUf/Z/BCbjJcGcSv8lrgYia73NKbxSjaCp0C8 KfEJURY= =RckZ -----END PGP SIGNATURE----- Fri Apr 26 00:22:09 UTC 2024 I: Checking whether the package is not for us Fri Apr 26 00:22:09 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Apr 26 00:22:09 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Apr 26 00:24:22 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 25 12:22:12 -12 2024 I: pbuilder-time-stamp: 1714090932 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-variantannotation_1.48.1-1.dsc] I: copying [./r-bioc-variantannotation_1.48.1.orig.tar.gz] I: copying [./r-bioc-variantannotation_1.48.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 1 09:59:29 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-variantannotation in r-bioc-variantannotation-1.48.1 dpkg-source: info: unpacking r-bioc-variantannotation_1.48.1.orig.tar.gz dpkg-source: info: unpacking r-bioc-variantannotation_1.48.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop_tests_requiring_large_data_sets.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2871079/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='dfd89eab9c55490c84ddf9c1b3edd307' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2871079' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/pbuilderrc_IgbQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/b1 --logfile b1/build.log r-bioc-variantannotation_1.48.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 07:15 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2871079/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-rsamtools, r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-biostrings, r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev | libcurl4-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.37.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-matrixgenerics; however: Package r-bioc-matrixgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools; however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-zlibbioc; however: Package r-bioc-zlibbioc is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bsgenome; however: Package r-bioc-bsgenome is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures; however: Package r-bioc-genomicfeatures is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhtslib (>= 1.99.3); however: Package r-bioc-rhtslib is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-openssl-dev | libcurl4-dev; however: Package libcurl4-openssl-dev is not installed. Package libcurl4-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 75.7 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: dh-r but it is not installable Depends: r-base-dev but it is not installable Depends: r-bioc-biocgenerics (>= 0.37.0) but it is not installable Depends: r-bioc-matrixgenerics but it is not installable Depends: r-bioc-genomeinfodb but it is not installable Depends: r-bioc-genomicranges but it is not installable Depends: r-bioc-summarizedexperiment but it is not installable Depends: r-bioc-rsamtools but it is not installable Depends: r-cran-dbi but it is not installable Depends: r-bioc-zlibbioc but it is not installable Depends: r-bioc-biobase but it is not installable Depends: r-bioc-s4vectors but it is not installable Depends: r-bioc-iranges but it is not installable Depends: r-bioc-xvector but it is not installable Depends: r-bioc-biostrings but it is not installable Depends: r-bioc-annotationdbi but it is not installable Depends: r-bioc-rtracklayer but it is not installable Depends: r-bioc-bsgenome but it is not installable Depends: r-bioc-genomicfeatures but it is not installable Depends: r-bioc-rhtslib (>= 1.99.3) but it is not installable Depends: libcurl4-openssl-dev but it is not installable or libcurl4-dev which is a virtual package, provided by: - libcurl4-openssl-dev (8.7.1-3), but it is not installable - libcurl4-gnutls-dev (8.7.1-3), but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libgnutls30 [3.8.3-1 (now)] 2) libhogweed6 [3.9.1-2+b1 (now)] 3) libnettle8 [3.9.1-2+b1 (now)] 4) libssl3 [3.1.5-1 (now)] Install the following packages: 5) ca-certificates [20240203 (testing)] 6) dctrl-tools [2.24-3 (testing)] 7) dh-r [20231212 (testing)] 8) fontconfig [2.15.0-1.1 (testing)] 9) fontconfig-config [2.15.0-1.1 (testing)] 10) fonts-urw-base35 [20200910-8 (testing)] 11) gfortran [4:13.2.0-7 (testing)] 12) gfortran-13 [13.2.0-23 (testing)] 13) gfortran-13-aarch64-linux-gnu [13.2.0-23 (testing)] 14) gfortran-aarch64-linux-gnu [4:13.2.0-7 (testing)] 15) icu-devtools [72.1-4+b1 (testing)] 16) libalgorithm-c3-perl [0.11-2 (testing)] 17) libatlas-base-dev [3.10.3-14 (testing)] 18) libatlas3-base [3.10.3-14 (testing)] 19) libb-hooks-endofscope-perl [0.28-1 (testing)] 20) libb-hooks-op-check-perl [0.22-2+b2 (testing)] 21) libboost-dev [1.83.0.2+b2 (testing)] 22) libboost1.83-dev [1.83.0-2+b2 (testing)] 23) libbrotli1 [1.1.0-2+b3 (testing)] 24) libbsd0 [0.12.2-1 (testing)] 25) libbz2-dev [1.0.8-5.1 (testing)] 26) libcairo2 [1.18.0-1+b1 (testing)] 27) libclass-c3-perl [0.35-2 (testing)] 28) libclass-load-perl [0.25-2 (testing)] 29) libclass-load-xs-perl [0.10-2+b2 (testing)] 30) libclone-perl [0.46-1+b1 (testing)] 31) libcurl3t64-gnutls [8.7.1-3 (testing)] 32) libcurl4-openssl-dev [8.7.1-3 (testing)] 33) libcurl4t64 [8.7.1-3 (testing)] 34) libdata-optlist-perl [0.114-1 (testing)] 35) libdatrie1 [0.2.13-3 (testing)] 36) libdeflate0 [1.20-1 (testing)] 37) libdevel-callchecker-perl [0.008-2+b1 (testing)] 38) libdevel-globaldestruction-perl [0.14-4 (testing)] 39) libdevel-overloadinfo-perl [0.007-1 (testing)] 40) libdevel-stacktrace-perl [2.0500-1 (testing)] 41) libdist-checkconflicts-perl [0.11-2 (testing)] 42) libdynaloader-functions-perl [0.003-3 (testing)] 43) libencode-locale-perl [1.05-3 (testing)] 44) libeval-closure-perl [0.14-3 (testing)] 45) libexpat1 [2.6.2-1 (testing)] 46) libfile-which-perl [1.27-2 (testing)] 47) libfontconfig1 [2.15.0-1.1 (testing)] 48) libfontenc1 [1:1.1.8-1 (testing)] 49) libfreetype6 [2.13.2+dfsg-1+b4 (testing)] 50) libfribidi0 [1.0.13-3+b1 (testing)] 51) libgfortran-13-dev [13.2.0-23 (testing)] 52) libgfortran5 [14-20240330-1 (testing)] 53) libglib2.0-0 [2.78.4-1 (testing)] 54) libgnutls30t64 [3.8.5-2 (testing)] 55) libgraphite2-3 [1.3.14-2 (testing)] 56) libharfbuzz0b [8.3.0-2 (testing)] 57) libhogweed6t64 [3.9.1-2.2 (testing)] 58) libhttp-date-perl [6.06-1 (testing)] 59) libhttp-message-perl [6.45-1 (testing)] 60) libice6 [2:1.0.10-1 (testing)] 61) libicu-dev [72.1-4+b1 (testing)] 62) libio-html-perl [1.004-3 (testing)] 63) libjbig0 [2.1-6.1+b1 (testing)] 64) libjpeg62-turbo [1:2.1.5-2+b2 (testing)] 65) libjpeg62-turbo-dev [1:2.1.5-2+b2 (testing)] 66) libjs-jquery [3.6.1+dfsg+~3.5.14-1 (testing)] 67) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 68) liblerc4 [4.0.0+ds-4+b1 (testing)] 69) liblwp-mediatypes-perl [6.04-2 (testing)] 70) liblzma-dev [5.6.1+really5.4.5-1 (testing)] 71) libmodule-implementation-perl [0.09-2 (testing)] 72) libmodule-runtime-conflicts-perl [0.003-2 (testing)] 73) libmodule-runtime-perl [0.016-2 (testing)] 74) libmoose-perl [2.2207-1 (testing)] 75) libmro-compat-perl [0.15-2 (testing)] 76) libnamespace-clean-perl [0.27-2 (testing)] 77) libncurses-dev [6.4+20240414-1 (testing)] 78) libncurses6 [6.4+20240414-1 (testing)] 79) libnettle8t64 [3.9.1-2.2 (testing)] 80) libnghttp2-14 [1.59.0-1 (testing)] 81) libpackage-deprecationmanager-perl [0.18-1 (testing)] 82) libpackage-stash-perl [0.40-1 (testing)] 83) libpackage-stash-xs-perl [0.30-1+b2 (testing)] 84) libpango-1.0-0 [1.52.0+ds-1 (testing)] 85) libpangocairo-1.0-0 [1.52.0+ds-1 (testing)] 86) libpangoft2-1.0-0 [1.52.0+ds-1 (testing)] 87) libpaper-utils [1.1.29 (testing)] 88) libpaper1 [1.1.29 (testing)] 89) libparams-classify-perl [0.015-2+b2 (testing)] 90) libparams-util-perl [1.102-2+b2 (testing)] 91) libpcre2-16-0 [10.42-4+b1 (testing)] 92) libpcre2-32-0 [10.42-4+b1 (testing)] 93) libpcre2-dev [10.42-4+b1 (testing)] 94) libpcre2-posix3 [10.42-4+b1 (testing)] 95) libpixman-1-0 [0.42.2-1+b1 (testing)] 96) libpkgconf3 [1.8.1-1+b2 (testing)] 97) libpng-dev [1.6.43-5 (testing)] 98) libpng16-16t64 [1.6.43-5 (testing)] 99) libpsl5t64 [0.21.2-1.1 (testing)] 100) libreadline-dev [8.2-4 (testing)] 101) libreadline8t64 [8.2-4 (testing)] 102) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 103) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 104) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 105) libsharpyuv0 [1.3.2-0.4+b1 (testing)] 106) libsm6 [2:1.2.3-1 (testing)] 107) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 108) libssl3t64 [3.2.1-3 (testing)] 109) libsub-exporter-perl [0.990-1 (testing)] 110) libsub-exporter-progressive-perl [0.001013-3 (testing)] 111) libsub-identify-perl [0.14-3+b1 (testing)] 112) libsub-install-perl [0.929-1 (testing)] 113) libsub-name-perl [0.27-1+b1 (testing)] 114) libswitch-perl [2.17-3 (testing)] 115) libtcl8.6 [8.6.14+dfsg-1 (testing)] 116) libthai-data [0.1.29-2 (testing)] 117) libthai0 [0.1.29-2 (testing)] 118) libtiff6 [4.5.1+git230720-4 (testing)] 119) libtimedate-perl [2.3300-2 (testing)] 120) libtk8.6 [8.6.14-1 (testing)] 121) libtry-tiny-perl [0.31-2 (testing)] 122) liburi-perl [5.28-1 (testing)] 123) libvariable-magic-perl [0.63-1+b2 (testing)] 124) libwebp7 [1.3.2-0.4+b1 (testing)] 125) libwww-curl-perl [4.17-10+b1 (testing)] 126) libwww-curl-simple-perl [0.100191-3 (testing)] 127) libx11-6 [2:1.8.7-1 (testing)] 128) libx11-data [2:1.8.7-1 (testing)] 129) libxau6 [1:1.0.9-1 (testing)] 130) libxcb-render0 [1.15-1 (testing)] 131) libxcb-shm0 [1.15-1 (testing)] 132) libxcb1 [1.15-1 (testing)] 133) libxdmcp6 [1:1.1.2-3 (testing)] 134) libxext6 [2:1.3.4-1+b1 (testing)] 135) libxft2 [2.3.6-1+b1 (testing)] 136) libxmuu1 [2:1.1.3-3 (testing)] 137) libxrender1 [1:0.9.10-1.1 (testing)] 138) libxss1 [1:1.2.3-1 (testing)] 139) libxt6 [1:1.2.1-1.1 (testing)] 140) node-html5shiv [3.7.3+dfsg-5 (testing)] 141) openssl [3.2.1-3 (testing)] 142) pkgconf [1.8.1-1+b2 (testing)] 143) pkgconf-bin [1.8.1-1+b2 (testing)] 144) r-base-core [4.3.2-1 (testing)] 145) r-base-dev [4.3.2-1 (testing)] 146) r-bioc-annotationdbi [1.64.1-1 (testing)] 147) r-bioc-biobase [2.62.0-1 (testing)] 148) r-bioc-biocfilecache [2.10.1+dfsg-1 (testing)] 149) r-bioc-biocgenerics [0.48.1-2 (testing)] 150) r-bioc-biocio [1.12.0+dfsg-1 (testing)] 151) r-bioc-biocparallel [1.36.0-1 (testing)] 152) r-bioc-biomart [2.58.2+dfsg-1 (testing)] 153) r-bioc-biostrings [2.70.3+dfsg-1 (testing)] 154) r-bioc-bsgenome [1.70.2-1 (testing)] 155) r-bioc-delayedarray [0.28.0+dfsg-1 (testing)] 156) r-bioc-genomeinfodb [1.38.6+dfsg-1 (testing)] 157) r-bioc-genomeinfodbdata [1.2.11-2 (testing)] 158) r-bioc-genomicalignments [1.38.2-1 (testing)] 159) r-bioc-genomicfeatures [1.54.3+dfsg-1 (testing)] 160) r-bioc-genomicranges [1.54.1+dfsg-1 (testing)] 161) r-bioc-iranges [2.36.0-1 (testing)] 162) r-bioc-keggrest [1.42.0+dfsg-1 (testing)] 163) r-bioc-matrixgenerics [1.14.0-1 (testing)] 164) r-bioc-rhtslib [2.4.1+dfsg-3 (testing)] 165) r-bioc-rsamtools [2.18.0+dfsg-1+b1 (testing)] 166) r-bioc-rtracklayer [1.62.0-1 (testing)] 167) r-bioc-s4arrays [1.2.0+dfsg-1 (testing)] 168) r-bioc-s4vectors [0.40.2+dfsg-1 (testing)] 169) r-bioc-sparsearray [1.2.4+dfsg-1 (testing)] 170) r-bioc-summarizedexperiment [1.32.0+dfsg-1 (testing)] 171) r-bioc-xvector [0.42.0-1 (testing)] 172) r-bioc-zlibbioc [1.48.0+dfsg-1 (testing)] 173) r-cran-abind [1.4-5-2 (testing)] 174) r-cran-askpass [1.2.0-1 (testing)] 175) r-cran-bh [1.84.0-1 (testing)] 176) r-cran-bit [4.0.5-1 (testing)] 177) r-cran-bit64 [4.0.5-1 (testing)] 178) r-cran-bitops [1.0-7-1 (testing)] 179) r-cran-blob [1.2.4-1 (testing)] 180) r-cran-cachem [1.0.8-1 (testing)] 181) r-cran-cli [3.6.2-1 (testing)] 182) r-cran-codetools [0.2-19-1 (testing)] 183) r-cran-cpp11 [0.4.7-1 (testing)] 184) r-cran-crayon [1.5.2-1 (testing)] 185) r-cran-curl [5.2.0+dfsg-1+b1 (testing)] 186) r-cran-dbi [1.2.2-1 (testing)] 187) r-cran-dbplyr [2.4.0+dfsg-1 (testing)] 188) r-cran-digest [0.6.34-1 (testing)] 189) r-cran-dplyr [1.1.4-1 (testing)] 190) r-cran-fansi [1.0.5-1 (testing)] 191) r-cran-fastmap [1.1.1-1 (testing)] 192) r-cran-filelock [1.0.3-1 (testing)] 193) r-cran-formatr [1.14-2 (testing)] 194) r-cran-futile.logger [1.4.3-4 (testing)] 195) r-cran-futile.options [1.0.1-3 (testing)] 196) r-cran-generics [0.1.3-1 (testing)] 197) r-cran-glue [1.7.0-1 (testing)] 198) r-cran-hms [1.1.3-1 (testing)] 199) r-cran-httr [1.4.7+dfsg-1 (testing)] 200) r-cran-jsonlite [1.8.8+dfsg-1 (testing)] 201) r-cran-lambda.r [1.2.4-2 (testing)] 202) r-cran-lattice [0.22-5-1 (testing)] 203) r-cran-lifecycle [1.0.4+dfsg-1 (testing)] 204) r-cran-littler [0.3.19-1 (testing)] 205) r-cran-magrittr [2.0.3-1 (testing)] 206) r-cran-matrix [1.6-5-1 (testing)] 207) r-cran-matrixstats [1.2.0-1 (testing)] 208) r-cran-memoise [2.0.1-1 (testing)] 209) r-cran-mime [0.12-2 (testing)] 210) r-cran-openssl [2.1.1+dfsg-2+b1 (testing)] 211) r-cran-pillar [1.9.0+dfsg-1 (testing)] 212) r-cran-pkgconfig [2.0.3-2 (testing)] 213) r-cran-plogr [0.2.0-3 (testing)] 214) r-cran-png [0.1-8-1+b1 (testing)] 215) r-cran-prettyunits [1.2.0-1 (testing)] 216) r-cran-progress [1.2.3-1 (testing)] 217) r-cran-purrr [1.0.2-1 (testing)] 218) r-cran-r6 [2.5.1-1 (testing)] 219) r-cran-rappdirs [0.3.3-1 (testing)] 220) r-cran-rcurl [1.98-1.14+dfsg-1+b1 (testing)] 221) r-cran-restfulr [0.0.15-1 (testing)] 222) r-cran-rjson [0.2.21-1 (testing)] 223) r-cran-rlang [1.1.3-1 (testing)] 224) r-cran-rsqlite [2.3.4-1 (testing)] 225) r-cran-snow [1:0.4.4-2 (testing)] 226) r-cran-stringi [1.8.3-1 (testing)] 227) r-cran-stringr [1.5.1-1 (testing)] 228) r-cran-sys [3.4.2-1 (testing)] 229) r-cran-tibble [3.2.1+dfsg-2 (testing)] 230) r-cran-tidyr [1.3.1-1 (testing)] 231) r-cran-tidyselect [1.2.0+dfsg-1 (testing)] 232) r-cran-utf8 [1.2.4-1 (testing)] 233) r-cran-vctrs [0.6.5-1 (testing)] 234) r-cran-withr [3.0.0+dfsg-1 (testing)] 235) r-cran-xml [3.99-0.16.1-1 (testing)] 236) r-cran-xml2 [1.3.6-1 (testing)] 237) r-cran-yaml [2.3.8-1 (testing)] 238) readline-common [8.2-4 (testing)] 239) tzdata [2024a-3 (testing)] 240) ucf [3.0043+nmu1 (testing)] 241) unzip [6.0-28 (testing)] 242) x11-common [1:7.7+23 (testing)] 243) xauth [1:1.1.2-1 (testing)] 244) xdg-utils [1.1.3-4.1 (testing)] 245) xfonts-encodings [1:1.0.4-2.2 (testing)] 246) xfonts-utils [1:7.7+6 (testing)] 247) zip [3.0-13 (testing)] 248) zlib1g-dev [1:1.3.dfsg-3+b1 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libatlas-base-dev{a} libatlas3-base{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0{a} libgnutls30t64{a} libgraphite2-3{a} libharfbuzz0b{a} libhogweed6t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnettle8t64{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libssl3t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} node-html5shiv{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-glue{a} r-cran-hms{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-plogr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-snow{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zip{a} zlib1g-dev{a} The following packages will be REMOVED: libgnutls30{a} libhogweed6{a} libnettle8{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-markdown r-cran-mockery r-cran-mockr r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-ps r-cran-r.devices r-cran-r.rsp r-cran-rcpp r-cran-readr r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-runit r-cran-rvest r-cran-scales r-cran-sf r-cran-shiny r-cran-sodium r-cran-spelling r-cran-survival r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-webutils r-cran-whoami r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 274 newly installed, 4 to remove and 0 not upgraded. Need to get 222 MB of archives. After unpacking 644 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libnettle8t64 arm64 3.9.1-2.2 [301 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [324 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.5-2 [1345 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libssl3t64 arm64 3.2.1-3 [2537 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-3 [255 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3 [1127 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 33 http://deb.debian.org/debian trixie/main arm64 libelf1 arm64 0.190-1+b1 [175 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1 [101 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-13 [223 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28 [157 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29 [8776 B] Get: 45 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libatlas3-base arm64 3.10.3-14 [2622 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 57 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1 [772 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.0-1+b1 [478 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4+b1 [20.2 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4+b1 [55.5 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5+b3 [172 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.59.0-1 [70.2 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.7.1-3 [412 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0 arm64 2.78.4-1 [1361 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-2+b2 [172 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 8.3.0-2 [2178 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3 [37.2 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2 [48.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.52.0+ds-1 [204 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.52.0+ds-1 [45.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.52.0+ds-1 [33.1 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1 [975 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.3.2-0.4+b1 [107 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.3.2-0.4+b1 [263 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.14-1 [732 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.3.2-1 [26.5 MB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libgfortran-13-dev arm64 13.2.0-23 [401 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-23 [9294 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 gfortran-13 arm64 13.2.0-23 [11.2 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7 [1288 B] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:13.2.0-7 [1428 B] Get: 111 http://deb.debian.org/debian trixie/main arm64 libatlas-base-dev arm64 3.10.3-14 [2993 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.4+20240414-1 [95.6 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.4+20240414-1 [336 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-4 [153 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-2+b2 [293 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b1 [207 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b1 [55.8 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b1 [669 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3+b1 [916 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.43-5 [356 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-5.1 [31.8 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.1+really5.4.5-1 [289 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-4+b1 [194 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-4+b1 [10.2 MB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3 [24.0 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1 [35.5 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-1+b2 [35.3 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-1+b2 [29.3 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.3.2-1 [4504 B] Get: 132 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.46-1+b1 [13.6 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.28-1 [98.6 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-2+b2 [23.8 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b2 [10.7 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.008-2+b1 [15.2 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b2 [22.3 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b2 [14.2 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b2 [19.0 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1 [765 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.63-1+b2 [42.7 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b1 [11.2 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b1 [12.3 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.7.1-3 [405 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-10+b1 [57.3 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-2+b2 [10.6 MB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 180 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.7.1-3 [531 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 r-bioc-biobase arm64 2.62.0-1 [2119 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2057 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 r-bioc-iranges arm64 2.36.0-1 [2254 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 r-cran-dbi all 1.2.2-1 [824 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 r-cran-bit arm64 4.0.5-1 [1058 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.2-1 [1320 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1 [156 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1 [1354 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 r-cran-fastmap arm64 1.1.1-1 [67.6 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 r-cran-cachem arm64 1.0.8-1 [72.0 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 r-cran-cpp11 all 0.4.7-1 [219 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 r-cran-rsqlite arm64 2.3.4-1 [1091 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 r-cran-curl arm64 5.2.0+dfsg-1+b1 [175 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 r-cran-mime arm64 0.12-2 [35.7 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 r-cran-sys arm64 3.4.2-1 [43.5 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 r-cran-askpass arm64 1.2.0-1 [24.1 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 r-cran-openssl arm64 2.1.1+dfsg-2+b1 [395 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 r-cran-png arm64 0.1-8-1+b1 [40.7 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B] Get: 213 http://deb.debian.org/debian trixie/main arm64 r-bioc-xvector arm64 0.42.0-1 [619 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 r-cran-bitops arm64 1.0-7-1 [30.1 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1+b1 [785 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] Get: 217 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3848 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 r-bioc-biostrings arm64 2.70.3+dfsg-1 [13.7 MB] Get: 220 http://deb.debian.org/debian trixie/main arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotationdbi all 1.64.1-1 [4705 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1 [200 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1 [132 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [420 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [219 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 r-cran-dplyr arm64 1.1.4-1 [1523 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 r-cran-purrr arm64 1.0.2-1 [506 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 r-cran-stringi arm64 1.8.3-1 [839 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 r-cran-tidyr arm64 1.3.1-1 [1160 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1188 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 r-cran-filelock arm64 1.0.3-1 [27.3 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [301 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocio all 1.12.0+dfsg-1 [214 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 r-cran-formatr all 1.14-2 [152 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 246 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocparallel arm64 1.36.0-1 [1333 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 r-cran-xml arm64 3.99-0.16.1-1 [1748 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 r-cran-hms all 1.1.3-1 [104 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 r-cran-progress all 1.2.3-1 [93.0 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 r-cran-digest arm64 0.6.34-1 [185 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 r-cran-rappdirs arm64 0.3.3-1 [47.4 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 r-cran-xml2 arm64 1.3.6-1 [317 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 r-bioc-biomart all 2.58.2+dfsg-1 [450 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1826 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-3 [1249 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1+b1 [3540 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.2.0-1 [465 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-5-1 [1393 kB] Get: 261 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.6-5-1 [3706 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 r-cran-abind all 1.4-5-2 [64.6 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [503 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1190 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1794 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2144 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.19-1 [99.5 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 r-cran-rjson arm64 0.2.21-1 [137 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 r-cran-yaml arm64 2.3.8-1 [101 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 r-cran-restfulr arm64 0.0.15-1 [382 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5081 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsgenome all 1.70.2-1 [6977 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1665 kB] Fetched 222 MB in 1s (238 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: libhogweed6:arm64 depends on libnettle8. libgnutls30:arm64 depends on libnettle8 (>= 3.9~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Removing libnettle8:arm64 (3.9.1-2+b1) ... Selecting previously unselected package libnettle8t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: libgnutls30:arm64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Removing libhogweed6:arm64 (3.9.1-2+b1) ... Selecting previously unselected package libhogweed6t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19925 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_arm64.deb ... Unpacking libhogweed6t64:arm64 (3.9.1-2.2) ... dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.8.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Removing libgnutls30:arm64 (3.8.3-1) ... Selecting previously unselected package libgnutls30t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19904 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.5-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.5-2) ... Setting up libnettle8t64:arm64 (3.9.1-2.2) ... Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... Setting up libgnutls30t64:arm64 (3.8.5-2) ... dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19933 files and directories currently installed.) Removing libssl3:arm64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_arm64.deb ... Unpacking libssl3t64:arm64 (3.2.1-3) ... Setting up libssl3t64:arm64 (3.2.1-3) ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19935 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.2.1-3_arm64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../006-libmagic1_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-2+b1_arm64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-3_arm64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.39.3-6_arm64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.0-3_arm64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3_arm64.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../025-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../028-libelf1_0.190-1+b1_arm64.deb ... Unpacking libelf1:arm64 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../030-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../031-libxml2_2.9.14+dfsg-1.3+b2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package zip. Preparing to unpack .../036-zip_3.0-13_arm64.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../037-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../038-libpaper1_1.1.29_arm64.deb ... Unpacking libpaper1:arm64 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../039-libpaper-utils_1.1.29_arm64.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../040-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../041-libgfortran5_14-20240330-1_arm64.deb ... Unpacking libgfortran5:arm64 (14-20240330-1) ... Selecting previously unselected package libatlas3-base:arm64. Preparing to unpack .../042-libatlas3-base_3.10.3-14_arm64.deb ... Unpacking libatlas3-base:arm64 (3.10.3-14) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../043-libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../044-libbrotli1_1.1.0-2+b3_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../045-libpng16-16t64_1.6.43-5_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../046-libfreetype6_2.13.2+dfsg-1+b4_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../047-libfontenc1_1%3a1.1.8-1_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../048-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../049-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../050-xfonts-utils_1%3a7.7+6_arm64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../051-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../052-fontconfig-config_2.15.0-1.1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../053-libfontconfig1_2.15.0-1.1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../054-libpixman-1-0_0.42.2-1+b1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../055-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../056-libbsd0_0.12.2-1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../057-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../058-libxcb1_1.15-1_arm64.deb ... Unpacking libxcb1:arm64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../059-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../060-libx11-6_2%3a1.8.7-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.7-1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.15-1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../063-libxext6_2%3a1.3.4-1+b1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../064-libxrender1_1%3a0.9.10-1.1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../065-libcairo2_1.18.0-1+b1_arm64.deb ... Unpacking libcairo2:arm64 (1.18.0-1+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../066-libsasl2-modules-db_2.1.28+dfsg1-4+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../067-libsasl2-2_2.1.28+dfsg1-4+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../068-libldap-2.5-0_2.5.13+dfsg-5+b3_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../069-libnghttp2-14_1.59.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.59.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../070-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../072-libssh2-1t64_1.11.0-4.1+b2_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../073-libcurl4t64_8.7.1-3_arm64.deb ... Unpacking libcurl4t64:arm64 (8.7.1-3) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../074-libglib2.0-0_2.78.4-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.78.4-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../075-libjpeg62-turbo_1%3a2.1.5-2+b2_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-2+b2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../076-fontconfig_2.15.0-1.1_arm64.deb ... Unpacking fontconfig (2.15.0-1.1) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../077-libfribidi0_1.0.13-3+b1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.13-3+b1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../078-libgraphite2-3_1.3.14-2_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../079-libharfbuzz0b_8.3.0-2_arm64.deb ... Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../080-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../081-libdatrie1_0.2.13-3_arm64.deb ... Unpacking libdatrie1:arm64 (0.2.13-3) ... Selecting previously unselected package libthai0:arm64. Preparing to unpack .../082-libthai0_0.1.29-2_arm64.deb ... Unpacking libthai0:arm64 (0.1.29-2) ... Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../083-libpango-1.0-0_1.52.0+ds-1_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.52.0+ds-1) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../084-libpangoft2-1.0-0_1.52.0+ds-1_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.52.0+ds-1) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../085-libpangocairo-1.0-0_1.52.0+ds-1_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.52.0+ds-1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../086-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../087-libtcl8.6_8.6.14+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../088-libdeflate0_1.20-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.20-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../089-libjbig0_2.1-6.1+b1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../090-liblerc4_4.0.0+ds-4+b1_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-4+b1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../091-libsharpyuv0_1.3.2-0.4+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.3.2-0.4+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../092-libwebp7_1.3.2-0.4+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.3.2-0.4+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../093-libtiff6_4.5.1+git230720-4_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-4) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../094-libxft2_2.3.6-1+b1_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../095-libxss1_1%3a1.2.3-1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../096-libtk8.6_8.6.14-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.14-1) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../097-libice6_2%3a1.0.10-1_arm64.deb ... Unpacking libice6:arm64 (2:1.0.10-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../098-libsm6_2%3a1.2.3-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.3-1) ... Selecting previously unselected package libxt6:arm64. Preparing to unpack .../099-libxt6_1%3a1.2.1-1.1_arm64.deb ... Unpacking libxt6:arm64 (1:1.2.1-1.1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../100-r-base-core_4.3.2-1_arm64.deb ... Unpacking r-base-core (4.3.2-1) ... Selecting previously unselected package libgfortran-13-dev:arm64. Preparing to unpack .../101-libgfortran-13-dev_13.2.0-23_arm64.deb ... Unpacking libgfortran-13-dev:arm64 (13.2.0-23) ... Selecting previously unselected package gfortran-13-aarch64-linux-gnu. Preparing to unpack .../102-gfortran-13-aarch64-linux-gnu_13.2.0-23_arm64.deb ... Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-23) ... Selecting previously unselected package gfortran-13. Preparing to unpack .../103-gfortran-13_13.2.0-23_arm64.deb ... Unpacking gfortran-13 (13.2.0-23) ... Selecting previously unselected package gfortran-aarch64-linux-gnu. Preparing to unpack .../104-gfortran-aarch64-linux-gnu_4%3a13.2.0-7_arm64.deb ... Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package gfortran. Preparing to unpack .../105-gfortran_4%3a13.2.0-7_arm64.deb ... Unpacking gfortran (4:13.2.0-7) ... Selecting previously unselected package libatlas-base-dev:arm64. Preparing to unpack .../106-libatlas-base-dev_3.10.3-14_arm64.deb ... Unpacking libatlas-base-dev:arm64 (3.10.3-14) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../107-libncurses6_6.4+20240414-1_arm64.deb ... Unpacking libncurses6:arm64 (6.4+20240414-1) ... Selecting previously unselected package libncurses-dev:arm64. Preparing to unpack .../108-libncurses-dev_6.4+20240414-1_arm64.deb ... Unpacking libncurses-dev:arm64 (6.4+20240414-1) ... Selecting previously unselected package libreadline-dev:arm64. Preparing to unpack .../109-libreadline-dev_8.2-4_arm64.deb ... Unpacking libreadline-dev:arm64 (8.2-4) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../110-libjpeg62-turbo-dev_1%3a2.1.5-2+b2_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:2.1.5-2+b2) ... Selecting previously unselected package libpcre2-16-0:arm64. Preparing to unpack .../111-libpcre2-16-0_10.42-4+b1_arm64.deb ... Unpacking libpcre2-16-0:arm64 (10.42-4+b1) ... Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../112-libpcre2-32-0_10.42-4+b1_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.42-4+b1) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../113-libpcre2-posix3_10.42-4+b1_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.42-4+b1) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../114-libpcre2-dev_10.42-4+b1_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.42-4+b1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../115-zlib1g-dev_1%3a1.3.dfsg-3+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3+b1) ... Selecting previously unselected package libpng-dev:arm64. Preparing to unpack .../116-libpng-dev_1.6.43-5_arm64.deb ... Unpacking libpng-dev:arm64 (1.6.43-5) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../117-libbz2-dev_1.0.8-5.1_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-5.1) ... Selecting previously unselected package liblzma-dev:arm64. Preparing to unpack .../118-liblzma-dev_5.6.1+really5.4.5-1_arm64.deb ... Unpacking liblzma-dev:arm64 (5.6.1+really5.4.5-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../119-icu-devtools_72.1-4+b1_arm64.deb ... Unpacking icu-devtools (72.1-4+b1) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../120-libicu-dev_72.1-4+b1_arm64.deb ... Unpacking libicu-dev:arm64 (72.1-4+b1) ... Selecting previously unselected package libxmuu1:arm64. Preparing to unpack .../121-libxmuu1_2%3a1.1.3-3_arm64.deb ... Unpacking libxmuu1:arm64 (2:1.1.3-3) ... Selecting previously unselected package xauth. Preparing to unpack .../122-xauth_1%3a1.1.2-1_arm64.deb ... Unpacking xauth (1:1.1.2-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../123-libpkgconf3_1.8.1-1+b2_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-1+b2) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../124-pkgconf-bin_1.8.1-1+b2_arm64.deb ... Unpacking pkgconf-bin (1.8.1-1+b2) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../125-pkgconf_1.8.1-1+b2_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-1+b2) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../126-r-base-dev_4.3.2-1_all.deb ... Unpacking r-base-dev (4.3.2-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../127-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../128-libswitch-perl_2.17-3_all.deb ... Unpacking libswitch-perl (2.17-3) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../129-libclone-perl_0.46-1+b1_arm64.deb ... Unpacking libclone-perl:arm64 (0.46-1+b1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../130-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../131-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../132-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../133-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../134-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../135-liburi-perl_5.28-1_all.deb ... Unpacking liburi-perl (5.28-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../136-libhttp-message-perl_6.45-1_all.deb ... Unpacking libhttp-message-perl (6.45-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../137-libparams-util-perl_1.102-2+b2_arm64.deb ... Unpacking libparams-util-perl (1.102-2+b2) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../138-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../139-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../140-libb-hooks-op-check-perl_0.22-2+b2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-2+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../141-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../142-libdevel-callchecker-perl_0.008-2+b1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.008-2+b1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../143-libparams-classify-perl_0.015-2+b2_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../144-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../145-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../146-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../147-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libclass-load-perl. Preparing to unpack .../148-libclass-load-perl_0.25-2_all.deb ... Unpacking libclass-load-perl (0.25-2) ... Selecting previously unselected package libclass-load-xs-perl. Preparing to unpack .../149-libclass-load-xs-perl_0.10-2+b2_arm64.deb ... Unpacking libclass-load-xs-perl (0.10-2+b2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../150-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../151-libdevel-globaldestruction-perl_0.14-4_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-4) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../152-libalgorithm-c3-perl_0.11-2_all.deb ... Unpacking libalgorithm-c3-perl (0.11-2) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../153-libclass-c3-perl_0.35-2_all.deb ... Unpacking libclass-c3-perl (0.35-2) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../154-libmro-compat-perl_0.15-2_all.deb ... Unpacking libmro-compat-perl (0.15-2) ... Selecting previously unselected package libdevel-overloadinfo-perl. Preparing to unpack .../155-libdevel-overloadinfo-perl_0.007-1_all.deb ... Unpacking libdevel-overloadinfo-perl (0.007-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../156-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../157-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../158-libeval-closure-perl_0.14-3_all.deb ... Unpacking libeval-closure-perl (0.14-3) ... Selecting previously unselected package libdist-checkconflicts-perl. Preparing to unpack .../159-libdist-checkconflicts-perl_0.11-2_all.deb ... Unpacking libdist-checkconflicts-perl (0.11-2) ... Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../160-libmodule-runtime-conflicts-perl_0.003-2_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-2) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../161-libpackage-deprecationmanager-perl_0.18-1_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.18-1) ... Selecting previously unselected package libpackage-stash-xs-perl:arm64. Preparing to unpack .../162-libpackage-stash-xs-perl_0.30-1+b2_arm64.deb ... Unpacking libpackage-stash-xs-perl:arm64 (0.30-1+b2) ... Selecting previously unselected package libmoose-perl:arm64. Preparing to unpack .../163-libmoose-perl_2.2207-1_arm64.deb ... Unpacking libmoose-perl:arm64 (2.2207-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../164-libvariable-magic-perl_0.63-1+b2_arm64.deb ... Unpacking libvariable-magic-perl (0.63-1+b2) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../165-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../166-libsub-identify-perl_0.14-3+b1_arm64.deb ... Unpacking libsub-identify-perl (0.14-3+b1) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../167-libsub-name-perl_0.27-1+b1_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.27-1+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../168-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../169-libcurl3t64-gnutls_8.7.1-3_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.7.1-3) ... Selecting previously unselected package libwww-curl-perl:arm64. Preparing to unpack .../170-libwww-curl-perl_4.17-10+b1_arm64.deb ... Unpacking libwww-curl-perl:arm64 (4.17-10+b1) ... Selecting previously unselected package libwww-curl-simple-perl. Preparing to unpack .../171-libwww-curl-simple-perl_0.100191-3_all.deb ... Unpacking libwww-curl-simple-perl (0.100191-3) ... Selecting previously unselected package dh-r. Preparing to unpack .../172-dh-r_20231212_all.deb ... Unpacking dh-r (20231212) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../173-libboost1.83-dev_1.83.0-2+b2_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-2+b2) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../174-libboost-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libcurl4-openssl-dev:arm64. Preparing to unpack .../175-libcurl4-openssl-dev_8.7.1-3_arm64.deb ... Unpacking libcurl4-openssl-dev:arm64 (8.7.1-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../176-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package node-html5shiv. Preparing to unpack .../177-node-html5shiv_3.7.3+dfsg-5_all.deb ... Unpacking node-html5shiv (3.7.3+dfsg-5) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../178-r-bioc-biocgenerics_0.48.1-2_all.deb ... Unpacking r-bioc-biocgenerics (0.48.1-2) ... Selecting previously unselected package r-bioc-biobase. Preparing to unpack .../179-r-bioc-biobase_2.62.0-1_arm64.deb ... Unpacking r-bioc-biobase (2.62.0-1) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../180-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../181-r-bioc-iranges_2.36.0-1_arm64.deb ... Unpacking r-bioc-iranges (2.36.0-1) ... Selecting previously unselected package r-cran-dbi. Preparing to unpack .../182-r-cran-dbi_1.2.2-1_all.deb ... Unpacking r-cran-dbi (1.2.2-1) ... Selecting previously unselected package r-cran-bit. Preparing to unpack .../183-r-cran-bit_4.0.5-1_arm64.deb ... Unpacking r-cran-bit (4.0.5-1) ... Selecting previously unselected package r-cran-bit64. Preparing to unpack .../184-r-cran-bit64_4.0.5-1_arm64.deb ... Unpacking r-cran-bit64 (4.0.5-1) ... Selecting previously unselected package r-cran-rlang. Preparing to unpack .../185-r-cran-rlang_1.1.3-1_arm64.deb ... Unpacking r-cran-rlang (1.1.3-1) ... Selecting previously unselected package r-cran-cli. Preparing to unpack .../186-r-cran-cli_3.6.2-1_arm64.deb ... Unpacking r-cran-cli (3.6.2-1) ... Selecting previously unselected package r-cran-glue. Preparing to unpack .../187-r-cran-glue_1.7.0-1_arm64.deb ... Unpacking r-cran-glue (1.7.0-1) ... Selecting previously unselected package r-cran-lifecycle. Preparing to unpack .../188-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... Selecting previously unselected package r-cran-vctrs. Preparing to unpack .../189-r-cran-vctrs_0.6.5-1_arm64.deb ... Unpacking r-cran-vctrs (0.6.5-1) ... Selecting previously unselected package r-cran-blob. Preparing to unpack .../190-r-cran-blob_1.2.4-1_all.deb ... Unpacking r-cran-blob (1.2.4-1) ... Selecting previously unselected package r-cran-fastmap. Preparing to unpack .../191-r-cran-fastmap_1.1.1-1_arm64.deb ... Unpacking r-cran-fastmap (1.1.1-1) ... Selecting previously unselected package r-cran-cachem. Preparing to unpack .../192-r-cran-cachem_1.0.8-1_arm64.deb ... Unpacking r-cran-cachem (1.0.8-1) ... Selecting previously unselected package r-cran-memoise. Preparing to unpack .../193-r-cran-memoise_2.0.1-1_all.deb ... Unpacking r-cran-memoise (2.0.1-1) ... Selecting previously unselected package r-cran-pkgconfig. Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2_all.deb ... Unpacking r-cran-pkgconfig (2.0.3-2) ... Selecting previously unselected package r-cran-plogr. Preparing to unpack .../195-r-cran-plogr_0.2.0-3_all.deb ... Unpacking r-cran-plogr (0.2.0-3) ... Selecting previously unselected package r-cran-cpp11. Preparing to unpack .../196-r-cran-cpp11_0.4.7-1_all.deb ... Unpacking r-cran-cpp11 (0.4.7-1) ... Selecting previously unselected package r-cran-rsqlite. Preparing to unpack .../197-r-cran-rsqlite_2.3.4-1_arm64.deb ... Unpacking r-cran-rsqlite (2.3.4-1) ... Selecting previously unselected package r-cran-curl. Preparing to unpack .../198-r-cran-curl_5.2.0+dfsg-1+b1_arm64.deb ... Unpacking r-cran-curl (5.2.0+dfsg-1+b1) ... Selecting previously unselected package r-cran-jsonlite. Preparing to unpack .../199-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... Selecting previously unselected package r-cran-mime. Preparing to unpack .../200-r-cran-mime_0.12-2_arm64.deb ... Unpacking r-cran-mime (0.12-2) ... Selecting previously unselected package r-cran-sys. Preparing to unpack .../201-r-cran-sys_3.4.2-1_arm64.deb ... Unpacking r-cran-sys (3.4.2-1) ... Selecting previously unselected package r-cran-askpass. Preparing to unpack .../202-r-cran-askpass_1.2.0-1_arm64.deb ... Unpacking r-cran-askpass (1.2.0-1) ... Selecting previously unselected package r-cran-openssl. Preparing to unpack .../203-r-cran-openssl_2.1.1+dfsg-2+b1_arm64.deb ... Unpacking r-cran-openssl (2.1.1+dfsg-2+b1) ... Selecting previously unselected package r-cran-r6. Preparing to unpack .../204-r-cran-r6_2.5.1-1_all.deb ... Unpacking r-cran-r6 (2.5.1-1) ... Selecting previously unselected package r-cran-httr. Preparing to unpack .../205-r-cran-httr_1.4.7+dfsg-1_all.deb ... Unpacking r-cran-httr (1.4.7+dfsg-1) ... Selecting previously unselected package r-cran-png. Preparing to unpack .../206-r-cran-png_0.1-8-1+b1_arm64.deb ... Unpacking r-cran-png (0.1-8-1+b1) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../207-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../208-r-bioc-xvector_0.42.0-1_arm64.deb ... Unpacking r-bioc-xvector (0.42.0-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../209-r-cran-bitops_1.0-7-1_arm64.deb ... Unpacking r-cran-bitops (1.0-7-1) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../210-r-cran-rcurl_1.98-1.14+dfsg-1+b1_arm64.deb ... Unpacking r-cran-rcurl (1.98-1.14+dfsg-1+b1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../211-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../212-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Selecting previously unselected package r-cran-crayon. Preparing to unpack .../213-r-cran-crayon_1.5.2-1_all.deb ... Unpacking r-cran-crayon (1.5.2-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../214-r-bioc-biostrings_2.70.3+dfsg-1_arm64.deb ... Unpacking r-bioc-biostrings (2.70.3+dfsg-1) ... Selecting previously unselected package r-bioc-keggrest. Preparing to unpack .../215-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../216-r-bioc-annotationdbi_1.64.1-1_all.deb ... Unpacking r-bioc-annotationdbi (1.64.1-1) ... Selecting previously unselected package r-cran-generics. Preparing to unpack .../217-r-cran-generics_0.1.3-1_all.deb ... Unpacking r-cran-generics (0.1.3-1) ... Selecting previously unselected package r-cran-magrittr. Preparing to unpack .../218-r-cran-magrittr_2.0.3-1_arm64.deb ... Unpacking r-cran-magrittr (2.0.3-1) ... Selecting previously unselected package r-cran-fansi. Preparing to unpack .../219-r-cran-fansi_1.0.5-1_arm64.deb ... Unpacking r-cran-fansi (1.0.5-1) ... Selecting previously unselected package r-cran-utf8. Preparing to unpack .../220-r-cran-utf8_1.2.4-1_arm64.deb ... Unpacking r-cran-utf8 (1.2.4-1) ... Selecting previously unselected package r-cran-pillar. Preparing to unpack .../221-r-cran-pillar_1.9.0+dfsg-1_all.deb ... Unpacking r-cran-pillar (1.9.0+dfsg-1) ... Selecting previously unselected package r-cran-tibble. Preparing to unpack .../222-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... Unpacking r-cran-tibble (3.2.1+dfsg-2) ... Selecting previously unselected package r-cran-withr. Preparing to unpack .../223-r-cran-withr_3.0.0+dfsg-1_all.deb ... Unpacking r-cran-withr (3.0.0+dfsg-1) ... Selecting previously unselected package r-cran-tidyselect. Preparing to unpack .../224-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... Selecting previously unselected package r-cran-dplyr. Preparing to unpack .../225-r-cran-dplyr_1.1.4-1_arm64.deb ... Unpacking r-cran-dplyr (1.1.4-1) ... Selecting previously unselected package r-cran-purrr. Preparing to unpack .../226-r-cran-purrr_1.0.2-1_arm64.deb ... Unpacking r-cran-purrr (1.0.2-1) ... Selecting previously unselected package r-cran-stringi. Preparing to unpack .../227-r-cran-stringi_1.8.3-1_arm64.deb ... Unpacking r-cran-stringi (1.8.3-1) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../228-r-cran-stringr_1.5.1-1_all.deb ... Unpacking r-cran-stringr (1.5.1-1) ... Selecting previously unselected package r-cran-tidyr. Preparing to unpack .../229-r-cran-tidyr_1.3.1-1_arm64.deb ... Unpacking r-cran-tidyr (1.3.1-1) ... Selecting previously unselected package r-cran-dbplyr. Preparing to unpack .../230-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... Selecting previously unselected package r-cran-filelock. Preparing to unpack .../231-r-cran-filelock_1.0.3-1_arm64.deb ... Unpacking r-cran-filelock (1.0.3-1) ... Selecting previously unselected package r-bioc-biocfilecache. Preparing to unpack .../232-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... Selecting previously unselected package r-bioc-biocio. Preparing to unpack .../233-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... Selecting previously unselected package r-cran-formatr. Preparing to unpack .../234-r-cran-formatr_1.14-2_all.deb ... Unpacking r-cran-formatr (1.14-2) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../235-r-cran-lambda.r_1.2.4-2_all.deb ... Unpacking r-cran-lambda.r (1.2.4-2) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../236-r-cran-futile.options_1.0.1-3_all.deb ... Unpacking r-cran-futile.options (1.0.1-3) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../237-r-cran-futile.logger_1.4.3-4_all.deb ... Unpacking r-cran-futile.logger (1.4.3-4) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../238-r-cran-snow_1%3a0.4.4-2_all.deb ... Unpacking r-cran-snow (1:0.4.4-2) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../239-r-cran-codetools_0.2-19-1_all.deb ... Unpacking r-cran-codetools (0.2-19-1) ... Selecting previously unselected package r-cran-bh. Preparing to unpack .../240-r-cran-bh_1.84.0-1_all.deb ... Unpacking r-cran-bh (1.84.0-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../241-r-bioc-biocparallel_1.36.0-1_arm64.deb ... Unpacking r-bioc-biocparallel (1.36.0-1) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../242-r-cran-xml_3.99-0.16.1-1_arm64.deb ... Unpacking r-cran-xml (3.99-0.16.1-1) ... Selecting previously unselected package r-cran-hms. Preparing to unpack .../243-r-cran-hms_1.1.3-1_all.deb ... Unpacking r-cran-hms (1.1.3-1) ... Selecting previously unselected package r-cran-prettyunits. Preparing to unpack .../244-r-cran-prettyunits_1.2.0-1_all.deb ... Unpacking r-cran-prettyunits (1.2.0-1) ... Selecting previously unselected package r-cran-progress. Preparing to unpack .../245-r-cran-progress_1.2.3-1_all.deb ... Unpacking r-cran-progress (1.2.3-1) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../246-r-cran-digest_0.6.34-1_arm64.deb ... Unpacking r-cran-digest (0.6.34-1) ... Selecting previously unselected package r-cran-rappdirs. Preparing to unpack .../247-r-cran-rappdirs_0.3.3-1_arm64.deb ... Unpacking r-cran-rappdirs (0.3.3-1) ... Selecting previously unselected package r-cran-xml2. Preparing to unpack .../248-r-cran-xml2_1.3.6-1_arm64.deb ... Unpacking r-cran-xml2 (1.3.6-1) ... Selecting previously unselected package r-bioc-biomart. Preparing to unpack .../249-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../250-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... Selecting previously unselected package r-bioc-rhtslib. Preparing to unpack .../251-r-bioc-rhtslib_2.4.1+dfsg-3_arm64.deb ... Unpacking r-bioc-rhtslib (2.4.1+dfsg-3) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../252-r-bioc-rsamtools_2.18.0+dfsg-1+b1_arm64.deb ... Unpacking r-bioc-rsamtools (2.18.0+dfsg-1+b1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../253-r-cran-matrixstats_1.2.0-1_arm64.deb ... Unpacking r-cran-matrixstats (1.2.0-1) ... Selecting previously unselected package r-bioc-matrixgenerics. Preparing to unpack .../254-r-bioc-matrixgenerics_1.14.0-1_all.deb ... Unpacking r-bioc-matrixgenerics (1.14.0-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../255-r-cran-lattice_0.22-5-1_arm64.deb ... Unpacking r-cran-lattice (0.22-5-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../256-r-cran-matrix_1.6-5-1_arm64.deb ... Unpacking r-cran-matrix (1.6-5-1) ... Selecting previously unselected package r-cran-abind. Preparing to unpack .../257-r-cran-abind_1.4-5-2_all.deb ... Unpacking r-cran-abind (1.4-5-2) ... Selecting previously unselected package r-bioc-s4arrays. Preparing to unpack .../258-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... Selecting previously unselected package r-bioc-sparsearray. Preparing to unpack .../259-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... Selecting previously unselected package r-bioc-delayedarray. Preparing to unpack .../260-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../261-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../262-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... Unpacking r-bioc-genomicalignments (1.38.2-1) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../263-r-cran-littler_0.3.19-1_arm64.deb ... Unpacking r-cran-littler (0.3.19-1) ... Selecting previously unselected package r-cran-rjson. Preparing to unpack .../264-r-cran-rjson_0.2.21-1_arm64.deb ... Unpacking r-cran-rjson (0.2.21-1) ... Selecting previously unselected package r-cran-yaml. Preparing to unpack .../265-r-cran-yaml_2.3.8-1_arm64.deb ... Unpacking r-cran-yaml (2.3.8-1) ... Selecting previously unselected package r-cran-restfulr. Preparing to unpack .../266-r-cran-restfulr_0.0.15-1_arm64.deb ... Unpacking r-cran-restfulr (0.0.15-1) ... Selecting previously unselected package r-bioc-rtracklayer. Preparing to unpack .../267-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... Unpacking r-bioc-rtracklayer (1.62.0-1) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../268-r-bioc-bsgenome_1.70.2-1_all.deb ... Unpacking r-bioc-bsgenome (1.70.2-1) ... Selecting previously unselected package r-bioc-genomicfeatures. Preparing to unpack .../269-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libgraphite2-3:arm64 (1.3.14-2) ... Setting up libpixman-1-0:arm64 (0.42.2-1+b1) ... Setting up libsharpyuv0:arm64 (1.3.2-0.4+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-2+b2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:arm64 (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libclone-perl:arm64 (0.46-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libglib2.0-0:arm64 (2.78.4-1) ... No schema files found: doing nothing. Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.59.0-1) ... Setting up libmagic1:arm64 (1:5.45-2+b1) ... Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libpcre2-16-0:arm64 (10.42-4+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Apr 26 00:22:51 UTC 2024. Universal Time is now: Fri Apr 26 00:22:51 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-13) ... Setting up libfontenc1:arm64 (1:1.1.8-1) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-4+b1) ... Setting up libpkgconf3:arm64 (1.8.1-1+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2+b2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-2+b2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:arm64 (6.4+20240414-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up libvariable-magic-perl (0.63-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libparams-util-perl (1.102-2+b2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.3.2-0.4+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.6.1+really5.4.5-1) ... Setting up libsub-name-perl:arm64 (0.27-1+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3+b1) ... Setting up libpcre2-posix3:arm64 (10.42-4+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1t64:arm64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libgfortran-13-dev:arm64 (13.2.0-23) ... Setting up openssl (3.2.1-3) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up libelf1:arm64 (0.190-1+b1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:arm64 (72.1-4+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.28-1) ... Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:arm64 (1.0.8-5.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libncurses-dev:arm64 (6.4+20240414-1) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libatlas3-base:arm64 (3.10.3-14) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libpcre2-dev:arm64 (10.42-4+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up libpng-dev:arm64 (1.6.43-5) ... Setting up gfortran-13-aarch64-linux-gnu (13.2.0-23) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2+b1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5+b3) ... Setting up libatlas-base-dev:arm64 (3.10.3-14) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up pkgconf:arm64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up gfortran-13 (13.2.0-23) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libx11-6:arm64 (2:1.8.7-1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2) ... Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up libcurl4t64:arm64 (8.7.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b2) ... Setting up libcurl3t64-gnutls:arm64 (8.7.1-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libwww-curl-perl:arm64 (4.17-10+b1) ... Setting up libpaper-utils (1.1.29) ... Setting up libreadline-dev:arm64 (8.2-4) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libmodule-runtime-perl (0.016-2) ... Setting up libcurl4-openssl-dev:arm64 (8.7.1-3) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.15.3) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libclass-load-perl (0.25-2) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libmoose-perl:arm64 (2.2207-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up libtk8.6:arm64 (8.6.14-1) ... Setting up libpango-1.0-0:arm64 (1.52.0+ds-1) ... Setting up libcairo2:arm64 (1.18.0-1+b1) ... Setting up libpangoft2-1.0-0:arm64 (1.52.0+ds-1) ... Setting up libpangocairo-1.0-0:arm64 (1.52.0+ds-1) ... Setting up r-base-core (4.3.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-5-1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-xml (3.99-0.16.1-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-filelock (1.0.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... Setting up r-cran-littler (0.3.19-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-curl (5.2.0+dfsg-1+b1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-bioc-biocgenerics (0.48.1-2) ... Setting up r-cran-rlang (1.1.3-1) ... Setting up r-cran-matrixstats (1.2.0-1) ... Setting up r-base-dev (4.3.2-1) ... Setting up r-bioc-matrixgenerics (1.14.0-1) ... Setting up r-cran-sys (3.4.2-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (3.0.0+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-abind (1.4-5-2) ... Setting up r-cran-digest (0.6.34-1) ... Setting up r-cran-yaml (2.3.8-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-dbi (1.2.2-1) ... Setting up r-cran-prettyunits (1.2.0-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-cli (3.6.2-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... Setting up r-cran-askpass (1.2.0-1) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-bioc-biobase (2.62.0-1) ... Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-stringi (1.8.3-1) ... Setting up r-cran-cpp11 (0.4.7-1) ... Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-matrix (1.6-5-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-bioc-iranges (2.36.0-1) ... Setting up dh-r (20231212) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.14+dfsg-1+b1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.1.1+dfsg-2+b1) ... Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.36.0-1) ... Setting up r-bioc-rhtslib (2.4.1+dfsg-3) ... Setting up r-cran-xml2 (1.3.6-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-bioc-biocio (1.12.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.42.0-1) ... Setting up r-cran-dplyr (1.1.4-1) ... Setting up r-cran-rsqlite (2.3.4-1) ... Setting up r-cran-progress (1.2.3-1) ... Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... Setting up r-bioc-biostrings (2.70.3+dfsg-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-bioc-rsamtools (2.18.0+dfsg-1+b1) ... Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.64.1-1) ... Setting up r-bioc-biomart (2.58.2+dfsg-1) ... Setting up r-bioc-genomicalignments (1.38.2-1) ... Setting up r-bioc-rtracklayer (1.62.0-1) ... Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... Setting up r-bioc-bsgenome (1.70.2-1) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-variantannotation-1.48.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-variantannotation_1.48.1-1_source.changes dpkg-buildpackage: info: source package r-bioc-variantannotation dpkg-buildpackage: info: source version 1.48.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-variantannotation/ -O--buildsystem=R I: R Package: VariantAnnotation Version: 1.48.1 I: Building using R version 4.3.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 01 Dec 2023 10:52:30 +0100 mkdir -p /build/reproducible-path/r-bioc-variantannotation-1.48.1/debian/r-bioc-variantannotation/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-variantannotation-1.48.1/debian/r-bioc-variantannotation/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 01 Dec 2023 10:52:30 +0100'" * installing *source* package 'VariantAnnotation' ... ** using staged installation ** libs using C compiler: 'gcc (Debian 13.2.0-23) 13.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-variantannotation-1.48.1/src' gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_VariantAnnotation.c -o R_init_VariantAnnotation.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c dna_hash.c -o dna_hash.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c rle.c -o rle.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c strhash.c -o strhash.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c utilities.c -o utilities.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c vcffile.c -o vcffile.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c vcftype.c -o vcftype.o gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c writevcf.c -o writevcf.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o VariantAnnotation.so Biostrings_stubs.o IRanges_stubs.o R_init_VariantAnnotation.o XVector_stubs.o dna_hash.o rle.o strhash.o utilities.o vcffile.o vcftype.o writevcf.o /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-variantannotation-1.48.1/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-variantannotation-1.48.1/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-variantannotation-1.48.1/src' installing to /build/reproducible-path/r-bioc-variantannotation-1.48.1/debian/r-bioc-variantannotation/usr/lib/R/site-library/00LOCK-r-bioc-variantannotation-1.48.1/00new/VariantAnnotation/libs ** R ** inst ** byte-compile and prepare package for lazy loading Warning messages: 1: package 'Rsamtools' was built under R version 4.3.3 2: package 'Biostrings' was built under R version 4.3.3 Creating a new generic function for 'tabulate' in package 'VariantAnnotation' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: package 'Rsamtools' was built under R version 4.3.3 Warning: package 'Biostrings' was built under R version 4.3.3 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: package 'Rsamtools' was built under R version 4.3.3 Warning: package 'Biostrings' was built under R version 4.3.3 ** testing if installed package keeps a record of temporary installation path * DONE (VariantAnnotation) W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0) I: Using r-bioc-matrixgenerics for Depends:MatrixGenerics I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2) I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.41.5) I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.19.5) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.99.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-annotationhub for Suggests:AnnotationHub W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene W: Cannot find a debian package for Suggests:SNPlocs.Hsapiens.dbSNP144.GRCh37 W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP132 W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP137 W: Cannot find a debian package for Suggests:PolyPhen.Hsapiens.dbSNP131 I: Using r-bioc-snpstats for Suggests:snpStats I: Using r-cran-ggplot2 for Suggests:ggplot2 I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-dbi for Imports:DBI I: Using r-bioc-zlibbioc for Imports:zlibbioc I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.27.12) I: Using r-bioc-iranges for Imports:IRanges (>= 2.23.9) I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2) I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.57.2) I: Using r-bioc-annotationdbi for Imports:AnnotationDbi (>= 1.27.9) I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.39.7) I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.47.3) I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.31.3) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: Using r-bioc-xvector for LinkingTo:XVector I: Using r-bioc-biostrings for LinkingTo:Biostrings I: Using r-bioc-rhtslib for LinkingTo:Rhtslib (>= 1.99.3) I: BioConductor API version: r-api-bioc-3.18 I: Use r-bioc-variantannotation as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-variantannotation' in '../r-bioc-variantannotation_1.48.1-1_arm64.deb'. dpkg-deb: building package 'r-bioc-variantannotation-dbgsym' in '../r-bioc-variantannotation-dbgsym_1.48.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-variantannotation_1.48.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-variantannotation_1.48.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2871079 and its subdirectories I: Current time: Thu Apr 25 12:24:21 -12 2024 I: pbuilder-time-stamp: 1714091061 Fri Apr 26 00:24:23 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Apr 26 00:24:23 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Apr 26 00:26:40 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Apr 26 00:26:41 UTC 2024 I: r-bioc-variantannotation_1.48.1-1_arm64.changes: Format: 1.8 Date: Fri, 01 Dec 2023 10:52:30 +0100 Source: r-bioc-variantannotation Binary: r-bioc-variantannotation r-bioc-variantannotation-dbgsym Architecture: arm64 Version: 1.48.1-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-variantannotation - BioConductor annotation of genetic variants Changes: r-bioc-variantannotation (1.48.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 29ffa57870269a9fef1acbe0848417df8835453f 87284 r-bioc-variantannotation-dbgsym_1.48.1-1_arm64.deb 06eff5745ec373ce9bf795c3daabc5e19dbadde2 13313 r-bioc-variantannotation_1.48.1-1_arm64.buildinfo 2f567dc932db9f9d40219cf64450f673e6a78c8a 3471252 r-bioc-variantannotation_1.48.1-1_arm64.deb Checksums-Sha256: 6980d55f63f0d5d7765b7cc05a8d50d0c8904471b8fc8500dade6b5eebc01de5 87284 r-bioc-variantannotation-dbgsym_1.48.1-1_arm64.deb 2196797cf47c1230ab1ec272fddc518456d8bc10952aa81be91382438be86ba5 13313 r-bioc-variantannotation_1.48.1-1_arm64.buildinfo 1d6aa99d7c88be187545547e9500239773ad0a5cff5e6b3421b48e7c5c06ccd4 3471252 r-bioc-variantannotation_1.48.1-1_arm64.deb Files: 245e1f76596b3ef6e82e20f28755f676 87284 debug optional r-bioc-variantannotation-dbgsym_1.48.1-1_arm64.deb 2dd1c962791c7690a417bd6c84f48f89 13313 gnu-r optional r-bioc-variantannotation_1.48.1-1_arm64.buildinfo 6b4238045da52030e4c58c691796f983 3471252 gnu-r optional r-bioc-variantannotation_1.48.1-1_arm64.deb Fri Apr 26 00:26:42 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_20-15535.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/r-bioc-variantannotation_1.48.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/r-bioc-variantannotation_1.48.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/r-bioc-variantannotation_1.48.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/b1/r-bioc-variantannotation_1.48.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Kmi4b5BS/b2/r-bioc-variantannotation_1.48.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.375s) 0.375s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.053s) 0.053s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 797ms CPU time consumed: 720ms Fri Apr 26 00:26:43 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 26 00:26:43 UTC 2024 I: r-bioc-variantannotation from trixie built successfully and reproducibly on arm64. Fri Apr 26 00:26:45 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Apr 26 00:26:45 UTC 2024 I: Submitting 16K b1/r-bioc-variantannotation_1.48.1-1_arm64.buildinfo.asc Fri Apr 26 00:26:46 UTC 2024 I: Submitting 16K b2/r-bioc-variantannotation_1.48.1-1_arm64.buildinfo.asc Fri Apr 26 00:26:47 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 26 00:26:47 UTC 2024 I: Done submitting .buildinfo files. Fri Apr 26 00:26:47 UTC 2024 I: Removing signed r-bioc-variantannotation_1.48.1-1_arm64.buildinfo.asc files: removed './b1/r-bioc-variantannotation_1.48.1-1_arm64.buildinfo.asc' removed './b2/r-bioc-variantannotation_1.48.1-1_arm64.buildinfo.asc'