Tue Oct 29 05:07:19 UTC 2024 I: starting to build r-bioc-mofa/trixie/arm64 on jenkins on '2024-10-29 05:07' Tue Oct 29 05:07:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/66346/console.log Tue Oct 29 05:07:19 UTC 2024 I: Downloading source for trixie/r-bioc-mofa=1.6.1+dfsg-13 --2024-10-29 05:07:19-- http://deb.debian.org/debian/pool/main/r/r-bioc-mofa/r-bioc-mofa_1.6.1%2bdfsg-13.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2529 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-mofa_1.6.1+dfsg-13.dsc’ 0K .. 100% 238M=0s 2024-10-29 05:07:19 (238 MB/s) - ‘r-bioc-mofa_1.6.1+dfsg-13.dsc’ saved [2529/2529] Tue Oct 29 05:07:19 UTC 2024 I: r-bioc-mofa_1.6.1+dfsg-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-mofa Binary: r-bioc-mofa, python3-mofapy Architecture: all Version: 1.6.1+dfsg-13 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/MOFA/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-mofa Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-mofa.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-sequence-python3, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py Package-List: python3-mofapy deb python optional arch=all r-bioc-mofa deb gnu-r optional arch=all Checksums-Sha1: 8ee4c92b87fcf39b8534aef972b6b52e01f042a9 914764 r-bioc-mofa_1.6.1+dfsg.orig.tar.xz 4c9e5be172578e3b7c4efa2e006e29bbcbd02e5f 4272 r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz Checksums-Sha256: 5ac4a90a4e759c2789cb16c0cf740b52780f935863d1c832b438518d6eedea84 914764 r-bioc-mofa_1.6.1+dfsg.orig.tar.xz 3f268cfe9f578762ea9ff33573a9fa5509e03494c5c21f2b0942933bd0997457 4272 r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz Files: 8e3302a2f6bd914b73984b7e4e55aa18 914764 r-bioc-mofa_1.6.1+dfsg.orig.tar.xz 37cd8a14c7f29ca399ceb0ce77d0b866 4272 r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbBwigACgkQPCZ2P2xn 5uI44Q//a0iv/A7b9rUxo5GSf00engO1/Pj5cj7O8jCv9BwtFF0ihsQS69p/sGPu 6w7fsSlpt1f201m3V0eYU0sKEnoinDAxMi7kWWKpdcor6i6yNEbR+XV8r8KNYNZv YXdbL4+uSQjF2ynNREqCe03Ft3FXe46JmitYzYbje7RQ7BmIW3fgER9uc0uWbo7S YjfwcO3Edc2ESqVVb9K+4Wv9FN8oiNL3oRx/6TufPtvzDP6vdS+PFVgvzKGXdPFm 3j45Whqd8FWrD8f2sl23V7b2KaXIZOE2kO7QTx6Z1ZGTu122Y5J2tEcQhgxzMc8J LF+6/Ryhf67YZOF1a+vl/+i+QAwqO8tNZrq72ua0yccX9ehl9psiAoNy/XSJ4t/7 J+s4JXo6dB6NZsWmrqklVlMtP1G3TNeS0H5QB1ZEUlwD+mt+t6u+9vga0iBOoGEJ 5amhDQqFowEl5oVRWKTjIDNqzV59WVSeG37RvQnOLjxbsic7tUoWfqNyhMwTGO8u 5Am3v4WUnCOGYac2Fd8kKPQjm6m3z+eHVad2Y9IVmL0FMco3WoY0v/Xu00SS1ij0 QzBQcbi5aptE5zevYknssmQw0KXAELvoby/nwHv6Wj05vZirVpPGIZjf4vPObpZN 3kjq+SX3jfsAW55ntTMtY2qWvYoI4GD4li5QcWaxKAr6dwfJFVs= =gDKM -----END PGP SIGNATURE----- Tue Oct 29 05:07:19 UTC 2024 I: Checking whether the package is not for us Tue Oct 29 05:07:19 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Oct 29 05:07:19 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Oct 29 05:09:21 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 28 17:07:22 -12 2024 I: pbuilder-time-stamp: 1730178442 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-mofa_1.6.1+dfsg-13.dsc] I: copying [./r-bioc-mofa_1.6.1+dfsg.orig.tar.xz] I: copying [./r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 09:43:04 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa_1.6.1+dfsg-13.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-mofa in r-bioc-mofa-1.6.1+dfsg dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying r-api-bioc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3002665/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f3b6f38e34ae499c8a2076d67a6a2030' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3002665' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/pbuilderrc_uTHf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/b1 --logfile b1/build.log r-bioc-mofa_1.6.1+dfsg-13.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3002665/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-sequence-python3, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20060 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-corrplot; however: Package r-cran-corrplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggally; however: Package r-cran-ggally is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cowplot; however: Package r-cran-cowplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-multiassayexperiment; however: Package r-bioc-multiassayexperiment is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... 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python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocbaseutils{a} r-bioc-biocgenerics{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-multiassayexperiment{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-beeswarm{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-ggstats{a} r-cran-glue{a} r-cran-gtable{a} r-cran-here{a} r-cran-hms{a} r-cran-httr{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-patchwork{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-cran-base64enc r-cran-bench r-cran-bit64 r-cran-brio r-cran-broom r-cran-broom.helpers r-cran-cairo r-cran-callr r-cran-caret r-cran-covr r-cran-crosstalk r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-emmeans r-cran-formattable r-cran-fs r-cran-geosphere r-cran-ggforce r-cran-gridextra r-cran-gridgraphics r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-intergraph r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-labelled r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mlbench r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-ps r-cran-pscl r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-readr r-cran-reshape r-cran-rmarkdown r-cran-rmysql r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-seriation r-cran-shiny r-cran-shinyjs r-cran-sna r-cran-sodium r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-vioplot r-cran-viridis r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 395 newly installed, 0 to remove and 0 not upgraded. Need to get 289 MB of archives. After unpacking 933 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-1 [1348 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14 [225 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b1 [12.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b1 [9068 B] Get: 73 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2 [115 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.1-1 [1410 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-6 [361 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3 [37.2 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2 [48.0 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.1-3 [28.0 MB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-6 [418 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-6 [9787 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-6 [11.9 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 134 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 135 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2 [95.7 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2 [337 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b1 [207 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b1 [55.8 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b1 [669 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1 [312 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5 [194 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5 [10.2 MB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b2 [22.0 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [192 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.1-3 [4512 B] Get: 160 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 184 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 185 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 189 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 194 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.10.1-2 [328 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 212 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libsnappy1v5 arm64 1.2.1-1 [28.4 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libblosc1 arm64 1.21.5+ds-1+b1 [39.0 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1 [1323 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.10.1-2 [447 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libdrm-common all 2.4.123-1 [8084 B] Get: 235 http://deb.debian.org/debian trixie/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libwayland-server0 arm64 1.23.0-1 [33.1 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libxcb-randr0 arm64 1.17.0-2 [116 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libglapi-mesa arm64 24.2.4-1 [48.2 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.2-1 [23.3 MB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 libsensors5 arm64 1:3.6.0-10 [34.0 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libx11-xcb1 arm64 2:1.8.7-1+b1 [232 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [107 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [107 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 libxcb-present0 arm64 1.17.0-2 [105 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libxcb-sync1 arm64 1.17.0-2 [109 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [109 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 libxshmfence1 arm64 1.3-1+b1 [9080 B] Get: 254 http://deb.debian.org/debian trixie/main arm64 mesa-libgallium arm64 24.2.4-1 [7681 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 libgbm1 arm64 24.2.4-1 [42.0 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 libglvnd0 arm64 1.7.0-1+b1 [41.7 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 libxcb-glx0 arm64 1.17.0-2 [122 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 libxfixes3 arm64 1:6.0.0-2+b1 [20.5 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b3 [19.2 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 libvulkan1 arm64 1.3.296.0-1 [123 kB] Get: 261 http://deb.debian.org/debian trixie/main arm64 libgl1-mesa-dri arm64 24.2.4-1 [43.5 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 libglx-mesa0 arm64 24.2.4-1 [152 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 libglx0 arm64 1.7.0-1+b1 [31.0 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 libgl1 arm64 1.7.0-1+b1 [90.9 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b1 [10.3 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 libunwind8 arm64 1.6.2-3.1 [47.7 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b2 [55.5 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 libxfont2 arm64 1:2.0.6-1+b1 [123 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 libxkbfile1 arm64 1:1.1.0-1+b1 [72.3 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 libxrandr2 arm64 2:1.5.4-1 [35.7 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-1 [102 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 284 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.11.0-5 [887 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 python3-joblib all 1.3.2-4 [216 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 291 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-4 [3746 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-4 [3096 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB] Get: 294 http://deb.debian.org/debian trixie/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3213 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Get: 297 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 r-bioc-biobase arm64 2.64.0-4 [2132 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocbaseutils all 1.6.0+dfsg-1 [38.5 kB] Get: 300 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1 [1391 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 r-bioc-iranges arm64 2.38.1-1 [2302 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4arrays arm64 1.4.1+dfsg-1 [523 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 310 http://deb.debian.org/debian trixie/main arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsearray arm64 1.4.8+dfsg-1 [1247 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedarray arm64 0.30.1+dfsg-1 [1847 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 r-cran-mime arm64 0.12-2 [35.7 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 r-cran-openssl arm64 2.2.0+dfsg-1 [399 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 321 http://deb.debian.org/debian trixie/main arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 323 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicranges arm64 1.56.1+dfsg-1 [1842 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1 [156 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.4-1 [1706 kB] Get: 330 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 332 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB] Get: 334 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2+b1 [425 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.1+dfsg-1 [226 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [223 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 r-cran-dplyr arm64 1.1.4-1+b1 [1542 kB] Get: 341 http://deb.debian.org/debian trixie/main arm64 r-cran-purrr arm64 1.0.2-1+b1 [518 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 r-cran-stringi arm64 1.8.4-1 [872 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 r-cran-tidyr arm64 1.3.1-1 [1160 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 r-bioc-multiassayexperiment all 1.30.3+dfsg-2 [1089 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5lib arm64 1.26.0+dfsg-1 [104 kB] Get: 348 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5filters arm64 1.16.0+dfsg-1 [137 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5 arm64 2.48.0+dfsg-3 [852 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 r-cran-beeswarm arm64 0.4.0-1+b2 [82.7 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 r-cran-corrplot all 0.94-1 [134 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.5+dfsg-1 [222 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-61-1 [1111 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.166-1 [2326 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1 [1395 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 r-cran-cowplot all 1.1.3+dfsg-1 [638 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 r-cran-iterators all 1.0.14-1 [337 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 r-cran-foreach all 1.5.2-1 [122 kB] Get: 369 http://deb.debian.org/debian trixie/main arm64 r-cran-doparallel all 1.0.17-1 [188 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 r-cran-ellipsis arm64 0.3.2-2+b1 [36.1 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 r-cran-forcats all 1.0.0-1 [413 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 r-cran-patchwork all 1.3.0-1 [3407 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 r-cran-ggstats all 0.7.0-1 [1107 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 375 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.13-1 [2063 kB] Get: 376 http://deb.debian.org/debian trixie/main arm64 r-cran-plyr arm64 1.8.9-1+b1 [791 kB] Get: 377 http://deb.debian.org/debian trixie/main arm64 r-cran-hms all 1.1.3-1 [104 kB] Get: 378 http://deb.debian.org/debian trixie/main arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get: 379 http://deb.debian.org/debian trixie/main arm64 r-cran-progress all 1.2.3-1 [93.0 kB] Get: 380 http://deb.debian.org/debian trixie/main arm64 r-cran-ggally all 2.2.1-1 [2022 kB] Get: 381 http://deb.debian.org/debian trixie/main arm64 r-cran-vipor all 0.4.7-1 [4509 kB] Get: 382 http://deb.debian.org/debian trixie/main arm64 r-cran-ggbeeswarm all 0.7.2-1 [1738 kB] Get: 383 http://deb.debian.org/debian trixie/main arm64 r-cran-ggrepel arm64 0.9.5-2 [244 kB] Get: 384 http://deb.debian.org/debian trixie/main arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] Get: 385 http://deb.debian.org/debian trixie/main arm64 r-cran-here all 1.0.1-2 [48.7 kB] Get: 386 http://deb.debian.org/debian trixie/main arm64 r-cran-pheatmap all 1.0.12-2 [77.9 kB] Get: 387 http://deb.debian.org/debian trixie/main arm64 r-cran-png arm64 0.1-8-1+b1 [40.7 kB] Get: 388 http://deb.debian.org/debian trixie/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 389 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpptoml arm64 0.2.2+dfsg-1+b1 [105 kB] Get: 390 http://deb.debian.org/debian trixie/main arm64 r-cran-reshape2 arm64 1.4.4-2+b1 [115 kB] Get: 391 http://deb.debian.org/debian trixie/main arm64 r-cran-reticulate arm64 1.39.0+dfsg-1 [1489 kB] Get: 392 http://deb.debian.org/debian trixie/main arm64 x11-xkb-utils arm64 7.7+9 [149 kB] Get: 393 http://deb.debian.org/debian trixie/main arm64 xkb-data all 2.42-1 [790 kB] Get: 394 http://deb.debian.org/debian trixie/main arm64 xserver-common all 2:21.1.13-2 [2393 kB] Get: 395 http://deb.debian.org/debian trixie/main arm64 xvfb arm64 2:21.1.13-2 [3106 kB] Fetched 289 MB in 2s (123 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20060 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20380 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21452 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.3.2-1_arm64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. 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Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libxcb-glx0:arm64 (1.17.0-2) ... Setting up unzip (6.0-28+b1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b4) ... Setting up libedit2:arm64 (3.1-20240808-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.63.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up xkb-data (2.42-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:arm64 (1.17.0-2) ... 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Setting up libz3-4:arm64 (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:arm64 (10.42-4+b1) ... Setting up libglib2.0-0t64:arm64 (2.82.1-1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunbound8:arm64 (1.22.0-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libswitch-perl (2.17-3) ... Setting up libgnutls-dane0t64:arm64 (3.8.6-2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3) ... Setting up libxcb-sync1:arm64 (1.17.0-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:arm64 (6.5-2) ... Setting up liblzf1:arm64 (3.6-4+b1) ... 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Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libxkbfile1:arm64 (1:1.1.0-1+b1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b2) ... Setting up openssl (3.3.2-1) ... Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up libdrm-common (2.4.123-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:arm64 (72.1-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b2) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b4) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-2) ... Setting up libblas-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.1.3-1) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-6) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... Setting up libllvm19:arm64 (1:19.1.2-1) ... Setting up libx11-xcb1:arm64 (2:1.8.7-1+b1) ... Setting up libice6:arm64 (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libxpm4:arm64 (1:3.5.17-1+b1) ... Setting up libpcre2-dev:arm64 (10.42-4+b1) ... Setting up nettle-dev:arm64 (3.10-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libaec-dev:arm64 (1.1.3-1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b1) ... Setting up liblapack-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libxrandr2:arm64 (2:1.5.4-1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:arm64 (2.4.123-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-6) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-6) ... Setting up libsm6:arm64 (2:1.2.3-1+b1) ... Setting up libxfont2:arm64 (1:2.0.6-1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... Setting up libgnutls28-dev:arm64 (3.8.6-2) ... Setting up libpaper1:arm64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up libnghttp2-dev:arm64 (1.63.0-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libcurl4t64:arm64 (8.10.1-2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up libdrm-radeon1:arm64 (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.10.1-2) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4) ... Setting up mesa-libgallium:arm64 (24.2.4-1) ... Setting up libxmu6:arm64 (2:1.1.3-3+b2) ... Setting up libpython3.12-stdlib:arm64 (3.12.6-1) ... Setting up libgbm1:arm64 (24.2.4-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up python3.12 (3.12.6-1) ... Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4) ... Setting up libgl1-mesa-dri:arm64 (24.2.4-1) ... Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-4) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libxaw7:arm64 (2:1.0.14-1+b2) ... Setting up libclass-load-perl (0.25-2) ... Setting up libcurl4-openssl-dev:arm64 (8.10.1-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-magrittr (2.0.3-1+b1) ... Setting up r-cran-rappdirs (0.3.3-1+b1) ... Setting up r-bioc-genomeinfodbdata (1.2.12-1) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-rcpp (1.0.13-1) ... Setting up r-cran-curl (5.2.3+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up libglx-mesa0:arm64 (24.2.4-1) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.1-3) ... Setting up littler (0.3.20-1) ... Setting up libglx0:arm64 (1.7.0-1+b1) ... Setting up r-bioc-matrixgenerics (1.16.0-2) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-withr (3.0.1+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up r-cran-vipor (0.4.7-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up x11-xkb-utils (7.7+9) ... Setting up r-cran-beeswarm (0.4.0-1+b2) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-prettyunits (1.2.0-1) ... Setting up r-cran-fansi (1.0.5-1+b1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-rprojroot (2.0.4-1) ... Setting up python3-tz (2024.1-2) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-corrplot (0.94-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up r-cran-utf8 (1.2.4-1+b1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up libgl1:arm64 (1.7.0-1+b1) ... Setting up r-cran-stringi (1.8.4-1) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-plyr (1.8.9-1+b1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1+b1) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.5+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up r-cran-rcpptoml (0.2.2+dfsg-1+b1) ... Setting up r-cran-mgcv (1.9-1-1+b1) ... Setting up r-bioc-biocbaseutils (1.6.0+dfsg-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up xserver-common (2:21.1.13-2) ... Setting up r-cran-reticulate (1.39.0+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1+b1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up r-cran-ellipsis (0.3.2-2+b1) ... Setting up r-cran-openssl (2.2.0+dfsg-1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up xvfb (2:21.1.13-2) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2+b1) ... Setting up r-bioc-rhdf5lib (1.26.0+dfsg-1) ... Setting up python3-all (3.12.6-1) ... Setting up r-bioc-rhdf5filters (1.16.0+dfsg-1) ... Setting up r-cran-forcats (1.0.0-1) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2+b1) ... Setting up python3-inflect (7.3.1-2) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-purrr (1.0.2-1+b1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up r-cran-dplyr (1.1.4-1+b1) ... Setting up dh-r (20231212) ... Setting up r-cran-progress (1.2.3-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up r-cran-pheatmap (1.0.12-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-joblib (1.3.2-4) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.48.0+dfsg-3) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-ggrepel (0.9.5-2) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up r-cran-ggbeeswarm (0.7.2-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up dh-python (6.20241024) ... Setting up r-cran-cowplot (1.1.3+dfsg-1) ... Setting up r-cran-patchwork (1.3.0-1) ... Setting up r-cran-ggstats (0.7.0-1) ... Setting up python3-scipy (1.13.1-5) ... Setting up r-bioc-genomicranges (1.56.1+dfsg-1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-4) ... Setting up r-cran-ggally (2.2.1-1) ... Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-pandas (2.2.3+dfsg-4) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-sklearn (1.4.2+dfsg-6) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-multiassayexperiment (1.30.3+dfsg-2) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-mofa_1.6.1+dfsg-13_source.changes dpkg-buildpackage: info: source package r-bioc-mofa dpkg-buildpackage: info: source version 1.6.1+dfsg-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf debian/python3-mofa.substvars mofapy.egg-info/ make[1]: Leaving directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy copying mofapy/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run copying mofapy/run/python_template.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run copying mofapy/run/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/variational_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/utils.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/updates.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/simulate.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/nongaussian_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/multiview_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/mixed_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/init_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/entry_point.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/distributions.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/build_model.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core copying mofapy/core/BayesNet.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_auto_install -O--buildsystem=R --sourcedirectory=/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg I: R Package: MOFA Version: 1.6.1 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 11:42:09 +0200 mkdir -p /build/reproducible-path/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" R CMD INSTALL -l /build/reproducible-path/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 11:42:09 +0200'" * installing *source* package 'MOFA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Please use MOFA2 instead of MOFA. Package 'MOFA' is deprecated and will be removed from Bioconductor version 3.13. ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Please use MOFA2 instead of MOFA. Package 'MOFA' is deprecated and will be removed from Bioconductor version 3.13. ** testing if installed package keeps a record of temporary installation path * DONE (MOFA) rm -f /build/reproducible-path/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library/MOFA/LICENSE W: Ignoring specified R dependency: R (>= 3.5) I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:MOFAdata I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-cran-pheatmap for Imports:pheatmap I: Using r-cran-corrplot for Imports:corrplot I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-ggbeeswarm for Imports:ggbeeswarm I: Using r-cran-scales for Imports:scales I: Using r-cran-ggally for Imports:GGally I: Using r-cran-rcolorbrewer by changing version to for Imports:RColorBrewer I: Using r-cran-cowplot for Imports:cowplot I: Using r-cran-ggrepel for Imports:ggrepel I: Using r-bioc-multiassayexperiment for Imports:MultiAssayExperiment I: Using r-bioc-biobase for Imports:Biobase I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-foreach for Imports:foreach I: Using r-cran-reticulate for Imports:reticulate I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-mofa as Debian binary package for variables substitution find /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian -name "*.Rmd" | xargs -r chmod -x mv debian/tmp tmp-install dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12 creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/__pycache__ creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/BayesNet.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/build_model.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/distributions.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/entry_point.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/init_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/mixed_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/multiview_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/nongaussian_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/simulate.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/updates.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/utils.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/core/variational_nodes.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run creating /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/__pycache__ copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/run/python_template.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run copying /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.12_mofapy/build/mofapy/__init__.py -> /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/BayesNet.py to BayesNet.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/build_model.py to build_model.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/distributions.py to distributions.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/entry_point.py to entry_point.cpython-312.pyc /usr/lib/python3.12/dist-packages/mofapy/core/entry_point.py:41: SyntaxWarning: invalid escape sequence '\/' byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/init_nodes.py to init_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/mixed_nodes.py to mixed_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/multiview_nodes.py to multiview_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/nodes.py to nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/nongaussian_nodes.py to nongaussian_nodes.cpython-312.pyc /usr/lib/python3.12/dist-packages/mofapy/core/nongaussian_nodes.py:144: SyntaxWarning: invalid escape sequence '\p' byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/simulate.py to simulate.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/updates.py to updates.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/utils.py to utils.cpython-312.pyc /usr/lib/python3.12/dist-packages/mofapy/core/utils.py:178: SyntaxWarning: invalid escape sequence '\m' byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/core/variational_nodes.py to variational_nodes.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/run/python_template.py to python_template.cpython-312.pyc byte-compiling /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating mofapy.egg-info writing mofapy.egg-info/PKG-INFO writing dependency_links to mofapy.egg-info/dependency_links.txt writing requirements to mofapy.egg-info/requires.txt writing top-level names to mofapy.egg-info/top_level.txt writing manifest file 'mofapy.egg-info/SOURCES.txt' reading manifest file 'mofapy.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'mofapy.egg-info/SOURCES.txt' Copying mofapy.egg-info to /build/reproducible-path/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.12/dist-packages/mofapy-1.2.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/reproducible-path/r-bioc-mofa-1.6.1+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides sklearn. Please add package that provides it to Build-Depends or add "sklearn python3-sklearn" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package r-bioc-mofa: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'r-bioc-mofa' in '../r-bioc-mofa_1.6.1+dfsg-13_all.deb'. dpkg-deb: building package 'python3-mofapy' in '../python3-mofapy_1.6.1+dfsg-13_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-mofa_1.6.1+dfsg-13_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3002665 and its subdirectories I: Current time: Mon Oct 28 17:09:20 -12 2024 I: pbuilder-time-stamp: 1730178560 Tue Oct 29 05:09:22 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Oct 29 05:09:22 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Oct 29 05:15:47 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Oct 29 05:15:48 UTC 2024 I: r-bioc-mofa_1.6.1+dfsg-13_arm64.changes: Format: 1.8 Date: Sun, 18 Aug 2024 11:42:09 +0200 Source: r-bioc-mofa Binary: python3-mofapy r-bioc-mofa Architecture: all Version: 1.6.1+dfsg-13 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: python3-mofapy - Multi-Omics Factor Analysis (MOFA) - Python module r-bioc-mofa - Multi-Omics Factor Analysis (MOFA) Changes: r-bioc-mofa (1.6.1+dfsg-13) unstable; urgency=medium . * Team upload. * Build with the 3.19 BioC API Checksums-Sha1: 39ba0d87a5130e42851fb878a951568ed19c663c 34668 python3-mofapy_1.6.1+dfsg-13_all.deb 8eebc92a31e4d3fb470bf11b55922772c977a1e9 584496 r-bioc-mofa_1.6.1+dfsg-13_all.deb 5c010f38c86c2156f31342eef2984cc92e1cb05f 16712 r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo Checksums-Sha256: 5466761cd931452d91d4b500e5a3193207b0e39167998f793d0b7deffab1afc0 34668 python3-mofapy_1.6.1+dfsg-13_all.deb 63691260804d8e16a0fdb626b3e141afa240e0934f23021bc42c4fbd015cc98b 584496 r-bioc-mofa_1.6.1+dfsg-13_all.deb ac964eb7b5db618994f416150d7bd7f8cf831c320cae0d6e045b5c86aeac81e7 16712 r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo Files: b73f6ec1c6a23f3014e60ce99bdbe610 34668 python optional python3-mofapy_1.6.1+dfsg-13_all.deb 23159d4962ac659c067f8acfac8b5ea3 584496 gnu-r optional r-bioc-mofa_1.6.1+dfsg-13_all.deb 59109604a75ae2cb3eee340419520c8d 16712 gnu-r optional r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo Tue Oct 29 05:15:49 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-66346.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/r-bioc-mofa_1.6.1+dfsg-13.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/r-bioc-mofa_1.6.1+dfsg-13.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/r-bioc-mofa_1.6.1+dfsg-13.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/b1/r-bioc-mofa_1.6.1+dfsg-13_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Yu9uPHSf/b2/r-bioc-mofa_1.6.1+dfsg-13_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.407s) 0.407s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 765ms CPU time consumed: 767ms Tue Oct 29 05:15:50 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 29 05:15:51 UTC 2024 I: r-bioc-mofa from trixie built successfully and reproducibly on arm64. Tue Oct 29 05:15:52 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Oct 29 05:15:52 UTC 2024 I: Submitting 20K b1/r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo.asc Tue Oct 29 05:15:53 UTC 2024 I: Submitting 20K b2/r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo.asc Tue Oct 29 05:15:54 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 29 05:15:54 UTC 2024 I: Done submitting .buildinfo files. Tue Oct 29 05:15:54 UTC 2024 I: Removing signed r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo.asc files: removed './b1/r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo.asc' removed './b2/r-bioc-mofa_1.6.1+dfsg-13_arm64.buildinfo.asc'