Wed Oct 30 11:09:48 UTC 2024 I: starting to build r-bioc-degnorm/trixie/arm64 on jenkins on '2024-10-30 11:09' Wed Oct 30 11:09:48 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/66538/console.log Wed Oct 30 11:09:48 UTC 2024 I: Downloading source for trixie/r-bioc-degnorm=1.14.0+ds-1 --2024-10-30 11:09:48-- http://deb.debian.org/debian/pool/main/r/r-bioc-degnorm/r-bioc-degnorm_1.14.0%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2468 (2.4K) [text/prs.lines.tag] Saving to: ‘r-bioc-degnorm_1.14.0+ds-1.dsc’ 0K .. 100% 302M=0s 2024-10-30 11:09:48 (302 MB/s) - ‘r-bioc-degnorm_1.14.0+ds-1.dsc’ saved [2468/2468] Wed Oct 30 11:09:48 UTC 2024 I: r-bioc-degnorm_1.14.0+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-degnorm Binary: r-bioc-degnorm Architecture: any Version: 1.14.0+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/DegNorm/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-degnorm Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-degnorm.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-cran-rcpp, r-bioc-genomicfeatures (>= 1.56.0), r-cran-foreach, r-bioc-s4vectors (>= 0.42.1), r-cran-doparallel, r-bioc-rsamtools (>= 2.20.0), r-bioc-genomicalignments (>= 1.40.0), r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo, r-bioc-txdbmaker Package-List: r-bioc-degnorm deb gnu-r optional arch=any Checksums-Sha1: 53875af8f27c16955088e69425f824c5c7d966e0 1680888 r-bioc-degnorm_1.14.0+ds.orig.tar.xz c9071fedeb840c6183be72370576a7c9914160a2 3196 r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz Checksums-Sha256: 4c893c9e79039f776f2a0474c44279a44004e965508c82453cb299c1679966f5 1680888 r-bioc-degnorm_1.14.0+ds.orig.tar.xz a97a704b4428ae74fd9c8264e0b4f2f4c5d305d10e9eae992b883a5314f0f500 3196 r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz Files: 13d1ac2b8c14764b0668fd21792f3b37 1680888 r-bioc-degnorm_1.14.0+ds.orig.tar.xz d3c8695b1ef2d1b3e4ec245852ff0da2 3196 r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbBzJ8ACgkQPCZ2P2xn 5uJI0w/8DnP4Lu9eITFwEp0R1aH+UQ4Xt7/EgQ1IB0sC3fUTptYJYXvP9+LMFtnB qZVOzc4un3NvgsVGkZsp5h07oOOKM6WnAeygFZYuIodChQaMoGeqSxTBTdWfPK2l +DqLvkhn+G3sOjHFBXjytGov7z4SuI8TNoh+/oM0I57EDQsYLIL2Ryg0ky+8HTr2 v1EpDJzbHhh86hH1pCo8PhP/0cU0VA49nOm/cVbMasTLQmy1qjIDyObFKdlrK77e tr8o2WPVX5mrbm7H6SUfXduQz3erObspPyf5YwT3XMzftLGwSWU0NI4A/VVhlu5i 2P/PDWKCLWcYCA2H7VljJ6tOy3pCiVlpDnSaxrxv3m/TgWFthsdcQVD/aWpVtcrq 2xId++ObKWK27GVmglqxAl1uglU9w04tQrJ7EhCZdVwR3THfawLfnzETYila9k5x 9AnbmD99+c9UST8NKajxJ2sJHaCIQTc0QLf8iQ1/bCbI2kdjmRYXHEEafS+kEpXa AGwjweBlHZvQECfxoQwnapl+GMQVRYDke51EWuaDmYoyqkAmCFVHmPksowJOSciK 9v7YZ6G6aGahll+R6u8Sk/d7NkJYvKcwiv1RJ3TQvJjX5SkDS9707N9ASeKjzjQh +HM0xRLm8IwgWdRUIAYBNvj24YIS7l2USBAkxUa+4JbLE/SfAeU= =1EoB -----END PGP SIGNATURE----- Wed Oct 30 11:09:48 UTC 2024 I: Checking whether the package is not for us Wed Oct 30 11:09:48 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Oct 30 11:09:48 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Oct 30 11:12:51 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 29 23:09:51 -12 2024 I: pbuilder-time-stamp: 1730286591 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-degnorm_1.14.0+ds-1.dsc] I: copying [./r-bioc-degnorm_1.14.0+ds.orig.tar.xz] I: copying [./r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:27:43 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-degnorm_1.14.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-degnorm in r-bioc-degnorm-1.14.0+ds dpkg-source: info: unpacking r-bioc-degnorm_1.14.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3408374/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f2bdc9a5eb6849a49cc26330eb732b48' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3408374' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/pbuilderrc_5UpN --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/b1 --logfile b1/build.log r-bioc-degnorm_1.14.0+ds-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3408374/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-cran-rcpp, r-bioc-genomicfeatures (>= 1.56.0), r-cran-foreach, r-bioc-s4vectors (>= 0.42.1), r-cran-doparallel, r-bioc-rsamtools (>= 2.20.0), r-bioc-genomicalignments (>= 1.40.0), r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo, r-bioc-txdbmaker dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20061 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures (>= 1.56.0); however: Package r-bioc-genomicfeatures is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools (>= 2.20.0); however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments (>= 1.40.0); however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-cran-heatmaply; however: Package r-cran-heatmaply is not installed. pbuilder-satisfydepends-dummy depends on r-cran-data.table; however: Package r-cran-data.table is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.56.1); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-plyr; however: Package r-cran-plyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-plotly; however: Package r-cran-plotly is not installed. pbuilder-satisfydepends-dummy depends on r-cran-viridis; however: Package r-cran-viridis is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpparmadillo; however: Package r-cran-rcpparmadillo is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-txdbmaker; however: Package r-bioc-txdbmaker is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lmodern{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libbibtex-parser-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} 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r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-biocmanager{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-bookdown{a} r-cran-bslib{a} r-cran-ca{a} r-cran-cachem{a} r-cran-callr{a} r-cran-cli{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-colourpicker{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-egg{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-fontawesome{a} r-cran-foreach{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-gclus{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-heatmaply{a} r-cran-highr{a} r-cran-hms{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-httr2{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-miniui{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-permute{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-plotly{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-processx{a} r-cran-progress{a} r-cran-promises{a} r-cran-ps{a} r-cran-purrr{a} r-cran-qap{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-rcurl{a} r-cran-registry{a} r-cran-reshape2{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsqlite{a} r-cran-sass{a} r-cran-scales{a} r-cran-seriation{a} r-cran-shiny{a} r-cran-shinyjs{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-tsp{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vegan{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-webshot{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-bibtex-extra{a} texlive-binaries{a} texlive-latex-base{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts dvisvgm git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lmodern lynx node-highlight.js node-jquery publicsuffix r-cran-ape r-cran-bench r-cran-brio r-cran-broom r-cran-cairo r-cran-caret r-cran-circlize r-cran-clipr r-cran-corrplot r-cran-covr r-cran-dbitest r-cran-dbscan r-cran-decor r-cran-desc r-cran-dichromat r-cran-docopt r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-forcats r-cran-formattable r-cran-fpc r-cran-future r-cran-ggalluvial r-cran-ggally r-cran-ggthemes r-cran-gh r-cran-gplots r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-irdisplay r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mlbench r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-palmerpenguins r-cran-pingr r-cran-pkgdown r-cran-pkgload r-cran-profvis r-cran-pvclust r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-r.utils r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmariadb r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rstudioapi r-cran-rsvg r-cran-rtsne r-cran-runit r-cran-rversions r-cran-rvest r-cran-sodium r-cran-spelling r-cran-survival r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tufte r-cran-unitizer r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 408 newly installed, 0 to remove and 0 not upgraded. Need to get 421 MB of archives. After unpacking 1322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-1 [1348 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 17 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 29 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14 [225 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b1 [12.9 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b1 [9068 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2 [115 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-6 [361 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3 [37.2 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2 [48.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.1-3 [28.0 MB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-6 [418 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-6 [9787 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-6 [11.9 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 112 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 113 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2 [95.7 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2 [337 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b1 [207 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b1 [55.8 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b1 [669 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1 [312 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5 [194 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5 [10.2 MB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b2 [22.0 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [192 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.1-3 [4512 B] Get: 138 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 162 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 163 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 167 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 172 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.10.1-2 [328 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 192 http://deb.debian.org/debian trixie/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libbibtex-parser-perl all 1.05+dfsg-1 [17.4 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 197 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 207 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libjs-lunr all 2.3.9~dfsg-2 [76.6 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-4 [153 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 liblua5.4-0 arm64 5.4.6-3+b1 [135 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libmpfi0 arm64 1.5.4+ds-3 [34.1 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libnuma1 arm64 2.0.18-1 [21.4 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 libpotrace0 arm64 1.16-2+b1 [23.1 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-4 [47.9 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-4 [60.2 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libteckit0 arm64 2.5.12+ds1-1 [300 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-4 [106 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b2 [55.5 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libzzip-0-13t64 arm64 0.13.72+dfsg.1-1.2+b1 [56.7 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-1 [102 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 pandoc arm64 3.1.11.1+ds-2 [26.2 MB] Get: 238 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 r-bioc-biobase arm64 2.64.0-4 [2132 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 r-bioc-iranges arm64 2.38.1-1 [2302 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 r-cran-bit arm64 4.0.5-1+b1 [1075 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 r-cran-bit64 arm64 4.0.5-1+b1 [475 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.4-1 [1706 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1 [156 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 r-cran-fastmap arm64 1.2.0-1 [68.8 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 r-cran-cachem arm64 1.1.0-1 [74.0 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 r-cran-rsqlite arm64 2.3.7-2 [1117 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 r-cran-mime arm64 0.12-2 [35.7 kB] Get: 261 http://deb.debian.org/debian trixie/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 r-cran-openssl arm64 2.2.0+dfsg-1 [399 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 r-cran-png arm64 0.1-8-1+b1 [40.7 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 268 http://deb.debian.org/debian trixie/main arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 271 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 r-bioc-biostrings arm64 2.72.1+dfsg-1 [13.2 MB] Get: 274 http://deb.debian.org/debian trixie/main arm64 r-bioc-keggrest all 1.44.1+dfsg-1 [183 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotationdbi all 1.66.0-1 [4682 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2+b1 [425 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.1+dfsg-1 [226 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [223 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 r-cran-dplyr arm64 1.1.4-1+b1 [1542 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 r-cran-purrr arm64 1.0.2-1+b1 [518 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 r-cran-stringi arm64 1.8.4-1 [872 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 r-cran-tidyr arm64 1.3.1-1 [1160 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1247 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 r-cran-filelock arm64 1.0.3-1+b1 [28.1 kB] Get: 291 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocfilecache all 2.12.0+dfsg-1 [301 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocio all 1.14.0+dfsg-1 [210 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 r-cran-formatr all 1.14-2 [152 kB] Get: 294 http://deb.debian.org/debian trixie/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 297 http://deb.debian.org/debian trixie/main arm64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 300 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocparallel arm64 1.38.0-2 [1321 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 r-cran-base64enc arm64 0.1-3-3+b1 [28.6 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 r-cran-htmltools arm64 0.5.8.1-1 [378 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 r-cran-xfun arm64 0.48+dfsg-1 [544 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 r-cran-yaml arm64 2.3.10-1 [103 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 r-cran-fs arm64 1.6.4+dfsg-1 [245 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 r-cran-sass arm64 0.4.9+dfsg-1 [871 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 r-cran-tinytex all 0.53-1 [146 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.13-1 [2063 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 r-cran-later arm64 1.3.2+dfsg-1 [110 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 r-cran-promises arm64 1.3.0+dfsg-1 [282 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [467 kB] Get: 321 http://deb.debian.org/debian trixie/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 r-cran-sourcetools arm64 0.1.7-1-1+b1 [45.0 kB] Get: 323 http://deb.debian.org/debian trixie/main arm64 r-cran-commonmark arm64 1.9.1-1 [107 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 r-cran-bookdown all 0.40+dfsg-1 [1404 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 tex-common all 6.18 [32.5 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get: 330 http://deb.debian.org/debian trixie/main arm64 texlive-binaries arm64 2024.20240313.70630+ds-4 [7373 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 texlive-base all 2024.20240829-2 [22.7 MB] Get: 332 http://deb.debian.org/debian trixie/main arm64 texlive-latex-base all 2024.20240829-2 [1273 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 texlive-bibtex-extra all 2024.20240829-1 [79.9 MB] Get: 334 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocversion all 3.19.1-1 [10.9 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocstyle all 2.32.1+dfsg-1 [453 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 r-cran-hms all 1.1.3-1 [104 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 r-cran-progress all 1.2.3-1 [93.0 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 r-cran-httr2 all 1.0.5-1 [654 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 r-cran-xml2 arm64 1.3.6-1+b1 [321 kB] Get: 341 http://deb.debian.org/debian trixie/main arm64 r-bioc-biomart all 2.60.1+dfsg-1 [452 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1 [1391 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4arrays arm64 1.4.1+dfsg-1 [523 kB] Get: 348 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsearray arm64 1.4.8+dfsg-1 [1247 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedarray arm64 0.30.1+dfsg-1 [1847 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicranges arm64 1.56.1+dfsg-1 [1842 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 r-cran-bitops arm64 1.0-8-1 [30.7 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhtslib arm64 3.0.0+dfsg-1 [1311 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 r-bioc-rsamtools arm64 2.20.0+dfsg-1 [3565 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicalignments arm64 1.40.0-1 [2160 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 r-cran-xml arm64 3.99-0.17-1 [1758 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [798 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 r-cran-rjson arm64 0.2.23-1 [99.0 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 r-cran-restfulr arm64 0.0.15-1+b1 [389 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 r-bioc-rtracklayer arm64 1.64.0-1 [5051 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicfeatures all 1.56.0+dfsg-1 [918 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 r-bioc-txdbmaker all 1.0.1+ds-1 [739 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 r-cran-ca all 0.71.1-2 [242 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 r-cran-ps arm64 1.8.0-1 [391 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 r-cran-processx arm64 3.8.4-1 [351 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 r-cran-callr all 3.7.6-1 [460 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 r-cran-cluster arm64 2.1.6-1+b1 [580 kB] Get: 369 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.5+dfsg-1 [222 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-61-1 [1111 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.166-1 [2326 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB] Get: 375 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1 [1395 kB] Get: 376 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 377 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 378 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 379 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 380 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB] Get: 381 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 382 http://deb.debian.org/debian trixie/main arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Get: 383 http://deb.debian.org/debian trixie/main arm64 r-cran-miniui all 0.1.1.1-3 [35.9 kB] Get: 384 http://deb.debian.org/debian trixie/main arm64 r-cran-shinyjs all 2.1.0-1 [1009 kB] Get: 385 http://deb.debian.org/debian trixie/main arm64 r-cran-colourpicker all 1.3.0+dfsg-1 [1212 kB] Get: 386 http://deb.debian.org/debian trixie/main arm64 r-cran-lazyeval arm64 0.2.2-1+b2 [145 kB] Get: 387 http://deb.debian.org/debian trixie/main arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [175 kB] Get: 388 http://deb.debian.org/debian trixie/main arm64 r-cran-data.table arm64 1.16.2+dfsg-1 [1958 kB] Get: 389 http://deb.debian.org/debian trixie/main arm64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 390 http://deb.debian.org/debian trixie/main arm64 r-cran-viridis all 0.6.5-1 [2991 kB] Get: 391 http://deb.debian.org/debian trixie/main arm64 r-cran-dendextend all 1.18.1+dfsg-1 [1102 kB] Get: 392 http://deb.debian.org/debian trixie/main arm64 r-cran-iterators all 1.0.14-1 [337 kB] Get: 393 http://deb.debian.org/debian trixie/main arm64 r-cran-foreach all 1.5.2-1 [122 kB] Get: 394 http://deb.debian.org/debian trixie/main arm64 r-cran-doparallel all 1.0.17-1 [188 kB] Get: 395 http://deb.debian.org/debian trixie/main arm64 r-cran-egg all 0.4.5-3 [786 kB] Get: 396 http://deb.debian.org/debian trixie/main arm64 r-cran-gclus all 1.3.2-2 [406 kB] Get: 397 http://deb.debian.org/debian trixie/main arm64 r-cran-plotly all 4.10.4+dfsg-2 [3634 kB] Get: 398 http://deb.debian.org/debian trixie/main arm64 r-cran-plyr arm64 1.8.9-1+b1 [791 kB] Get: 399 http://deb.debian.org/debian trixie/main arm64 r-cran-reshape2 arm64 1.4.4-2+b1 [115 kB] Get: 400 http://deb.debian.org/debian trixie/main arm64 r-cran-qap arm64 0.1-2-1+b1 [345 kB] Get: 401 http://deb.debian.org/debian trixie/main arm64 r-cran-registry all 0.5-1-2 [202 kB] Get: 402 http://deb.debian.org/debian trixie/main arm64 r-cran-tsp arm64 1.2-4-1+b1 [630 kB] Get: 403 http://deb.debian.org/debian trixie/main arm64 r-cran-permute all 0.9-7-1 [225 kB] Get: 404 http://deb.debian.org/debian trixie/main arm64 r-cran-vegan arm64 2.6-8+dfsg-1 [3129 kB] Get: 405 http://deb.debian.org/debian trixie/main arm64 r-cran-seriation arm64 1.5.6-1 [1332 kB] Get: 406 http://deb.debian.org/debian trixie/main arm64 r-cran-webshot all 0.5.5-1 [189 kB] Get: 407 http://deb.debian.org/debian trixie/main arm64 r-cran-heatmaply all 1.5.0+dfsg-1 [307 kB] Get: 408 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpparmadillo arm64 14.0.2-1-1 [855 kB] Fetched 421 MB in 3s (152 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20061 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-1_arm64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../015-architecture-properties_0.2.3_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.3) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../021-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../028-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../030-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../031-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zip. Preparing to unpack .../036-zip_3.0-14_arm64.deb ... Unpacking zip (3.0-14) ... Selecting previously unselected package unzip. Preparing to unpack .../037-unzip_6.0-28+b1_arm64.deb ... Unpacking unzip (6.0-28+b1) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../038-libpaper1_1.1.29+b1_arm64.deb ... Unpacking libpaper1:arm64 (1.1.29+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../039-libpaper-utils_1.1.29+b1_arm64.deb ... Unpacking libpaper-utils (1.1.29+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../040-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../041-libblas3_3.12.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../042-libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../043-libbrotli1_1.1.0-2+b4_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../044-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../045-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.15.0-1.1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../049-libfontconfig1_2.15.0-1.1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../050-libpixman-1-0_0.42.2-1+b1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../091-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../092-libjbig0_2.1-6.1+b1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../099-libxft2_2.3.6-1+b1_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../100-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../101-libxss1_1%3a1.2.3-1+b1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../102-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... Selecting previously unselected package libice6:arm64. 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Selecting previously unselected package liblzma-dev:arm64. Preparing to unpack .../126-liblzma-dev_5.6.3-1_arm64.deb ... Unpacking liblzma-dev:arm64 (5.6.3-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../127-icu-devtools_72.1-5_arm64.deb ... Unpacking icu-devtools (72.1-5) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../128-libicu-dev_72.1-5_arm64.deb ... Unpacking libicu-dev:arm64 (72.1-5) ... Selecting previously unselected package libxmuu1:arm64. Preparing to unpack .../129-libxmuu1_2%3a1.1.3-3+b2_arm64.deb ... Unpacking libxmuu1:arm64 (2:1.1.3-3+b2) ... Selecting previously unselected package xauth. Preparing to unpack .../130-xauth_1%3a1.1.2-1+b1_arm64.deb ... Unpacking xauth (1:1.1.2-1+b1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../131-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. 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Setting up liblapack-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-6) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-6) ... Setting up libsm6:arm64 (2:1.2.3-1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:arm64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libxi6:arm64 (2:1.8.2-1) ... Setting up libcurl4t64:arm64 (8.10.1-2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.10.1-2) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libxmu6:arm64 (2:1.1.3-3+b2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libxaw7:arm64 (2:1.0.14-1+b2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-sourcetools (0.1.7-1-1+b1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-ps (1.8.0-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-xml (3.99-0.17-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up texlive-binaries (2024.20240313.70630+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up r-cran-cluster (2.1.6-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-lazyeval (0.2.2-1+b2) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-rjson (0.2.23-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-ca (0.71.1-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up texlive-base (2024.20240829-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up r-cran-magrittr (2.0.3-1+b1) ... Setting up r-cran-rappdirs (0.3.3-1+b1) ... Setting up r-cran-filelock (1.0.3-1+b1) ... Setting up r-bioc-genomeinfodbdata (1.2.12-1) ... Setting up r-cran-registry (0.5-1-2) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-permute (0.9-7-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.4+dfsg-1) ... Setting up r-cran-rcpp (1.0.13-1) ... Setting up r-cran-curl (5.2.3+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.1-3) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up littler (0.3.20-1) ... Setting up r-bioc-matrixgenerics (1.16.0-2) ... Setting up r-cran-xfun (0.48+dfsg-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-gclus (1.3.2-2) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (3.0.1+dfsg-1) ... Setting up r-cran-processx (3.8.4-1) ... Setting up r-cran-mime (0.12-2) ... Setting up r-cran-qap (0.1-2-1+b1) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3+b1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (1.0.0-1) ... Setting up r-cran-dbi (1.2.3-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-prettyunits (1.2.0-1) ... Setting up r-cran-fansi (1.0.5-1+b1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-data.table (1.16.2+dfsg-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-bit (4.0.5-1+b1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-8-1) ... Setting up r-bioc-biocversion (3.19.1-1) ... Setting up r-cran-bit64 (4.0.5-1+b1) ... Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1+b1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up r-cran-stringi (1.8.4-1) ... Setting up texlive-latex-base (2024.20240829-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-plyr (1.8.9-1+b1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1+b1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.5+dfsg-1) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up r-cran-htmltools (0.5.8.1-1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1+b1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1) ... Setting up r-cran-rcpparmadillo (14.0.2-1-1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up r-cran-tsp (1.2-4-1+b1) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1+b1) ... Setting up r-cran-vctrs (0.6.5-1+b1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up r-cran-callr (3.7.6-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-rhtslib (3.0.0+dfsg-1) ... Setting up r-cran-xml2 (1.3.6-1+b1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2+b1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-bioc-biocio (1.14.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up texlive-bibtex-extra (2024.20240829-1) ... Setting up r-cran-reshape2 (1.4.4-2+b1) ... Setting up r-cran-httr2 (1.0.5-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1) ... Setting up r-cran-purrr (1.0.2-1+b1) ... Setting up r-cran-vegan (2.6-8+dfsg-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up r-cran-seriation (1.5.6-1) ... Setting up r-cran-dplyr (1.1.4-1+b1) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.7-2) ... Setting up r-cran-progress (1.2.3-1) ... Setting up r-cran-webshot (0.5.5-1) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up r-cran-viridis (0.6.5-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up r-cran-dendextend (1.18.1+dfsg-1) ... Setting up r-bioc-biocfilecache (2.12.0+dfsg-1) ... Setting up r-cran-egg (0.4.5-3) ... Setting up r-bioc-genomicranges (1.56.1+dfsg-1) ... Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up r-cran-shinyjs (2.1.0-1) ... Setting up r-cran-miniui (0.1.1.1-3) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-bioc-rsamtools (2.20.0+dfsg-1) ... Setting up r-cran-bookdown (0.40+dfsg-1) ... Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... Setting up r-bioc-annotationdbi (1.66.0-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... Setting up r-bioc-biomart (2.60.1+dfsg-1) ... Setting up r-bioc-biocstyle (2.32.1+dfsg-1) ... Setting up r-bioc-genomicalignments (1.40.0-1) ... Setting up r-bioc-rtracklayer (1.64.0-1) ... Setting up r-bioc-genomicfeatures (1.56.0+dfsg-1) ... Setting up r-cran-plotly (4.10.4+dfsg-2) ... Setting up r-cran-heatmaply (1.5.0+dfsg-1) ... Setting up r-bioc-txdbmaker (1.0.1+ds-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-degnorm-1.14.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-degnorm_1.14.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-degnorm dpkg-buildpackage: info: source version 1.14.0+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-degnorm/ -O--buildsystem=R I: R Package: DegNorm Version: 1.14.0 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 12:27:20 +0200 mkdir -p /build/reproducible-path/r-bioc-degnorm-1.14.0\+ds/debian/r-bioc-degnorm/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-degnorm-1.14.0\+ds/debian/r-bioc-degnorm/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 12:27:20 +0200'" * installing *source* package 'DegNorm' ... ** using staged installation ** libs using C++ compiler: 'g++ (Debian 14.2.0-6) 14.2.0' using C++11 make[1]: Entering directory '/build/reproducible-path/r-bioc-degnorm-1.14.0+ds/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppArmadillo/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppArmadillo/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c degnormCPP.cpp -o degnormCPP.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DegNorm.so RcppExports.o degnormCPP.o -fopenmp -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-degnorm-1.14.0+ds/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-degnorm-1.14.0+ds/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-degnorm-1.14.0+ds/src' installing to /build/reproducible-path/r-bioc-degnorm-1.14.0+ds/debian/r-bioc-degnorm/usr/lib/R/site-library/00LOCK-r-bioc-degnorm-1.14.0+ds/00new/DegNorm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DegNorm) W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-formatr for Suggests:formatR I: Using r-cran-rcpp for Imports:Rcpp (>= 1.0.2) I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures I: Using r-bioc-txdbmaker for Imports:txdbmaker I: Using r-cran-foreach for Imports:foreach I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-cran-doparallel for Imports:doParallel I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.31.2) I: Using r-bioc-genomicalignments for Imports:GenomicAlignments I: Using r-cran-heatmaply for Imports:heatmaply I: Using r-cran-data.table for Imports:data.table I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-bioc-iranges for Imports:IRanges I: Using r-cran-plyr for Imports:plyr I: Using r-cran-plotly for Imports:plotly I: Using r-cran-viridis for Imports:viridis I: Using r-cran-rcpp for LinkingTo:Rcpp I: Using r-cran-rcpparmadillo for LinkingTo:RcppArmadillo I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-degnorm as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-degnorm-dbgsym' in '../r-bioc-degnorm-dbgsym_1.14.0+ds-1_arm64.deb'. dpkg-deb: building package 'r-bioc-degnorm' in '../r-bioc-degnorm_1.14.0+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-degnorm_1.14.0+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3408374 and its subdirectories I: Current time: Tue Oct 29 23:12:50 -12 2024 I: pbuilder-time-stamp: 1730286770 Wed Oct 30 11:12:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Oct 30 11:12:52 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Oct 30 11:18:25 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Oct 30 11:18:26 UTC 2024 I: r-bioc-degnorm_1.14.0+ds-1_arm64.changes: Format: 1.8 Date: Sun, 18 Aug 2024 12:27:20 +0200 Source: r-bioc-degnorm Binary: r-bioc-degnorm r-bioc-degnorm-dbgsym Architecture: arm64 Version: 1.14.0+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-degnorm - DegNorm: degradation normalization for RNA-seq data Changes: r-bioc-degnorm (1.14.0+ds-1) unstable; urgency=medium . * Team upload. * Upload to unstable. Checksums-Sha1: fe8cbd391e1545d5431a46279dda6ee52d0675d7 898092 r-bioc-degnorm-dbgsym_1.14.0+ds-1_arm64.deb aeaae4825a4a5c5b3157eb92ce8742a825cef081 17317 r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo 2b7678a4bf746957a244052c10c7867951d274cb 1513112 r-bioc-degnorm_1.14.0+ds-1_arm64.deb Checksums-Sha256: 7c822e9bf1efc02c259d4c2705c8e52fe7f1ca5a02217ab6ffab9c218f5100dd 898092 r-bioc-degnorm-dbgsym_1.14.0+ds-1_arm64.deb f34994fc2484b442e01a7835aff824c7885f7df3c51cb289afbb0b291c80ac06 17317 r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo 39fcef4f8f25e19ea52e9974a8b4ba1fe90f6ca7f1f58ab4633c4c578a85cd8d 1513112 r-bioc-degnorm_1.14.0+ds-1_arm64.deb Files: 33a8798b1bafed34efa4bedef18a464f 898092 debug optional r-bioc-degnorm-dbgsym_1.14.0+ds-1_arm64.deb ea264201deb25bc0c616cee8a0a56e56 17317 gnu-r optional r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo cc1bb01780bfc89890cbb8685a2de59e 1513112 gnu-r optional r-bioc-degnorm_1.14.0+ds-1_arm64.deb Wed Oct 30 11:18:27 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-66538.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/r-bioc-degnorm_1.14.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/r-bioc-degnorm_1.14.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/r-bioc-degnorm_1.14.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/b1/r-bioc-degnorm_1.14.0+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ruyTs7XN/b2/r-bioc-degnorm_1.14.0+ds-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.445s) 0.445s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.051s) 0.051s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 820ms CPU time consumed: 818ms Wed Oct 30 11:18:28 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 30 11:18:28 UTC 2024 I: r-bioc-degnorm from trixie built successfully and reproducibly on arm64. Wed Oct 30 11:18:30 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Oct 30 11:18:30 UTC 2024 I: Submitting 20K b1/r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo.asc Wed Oct 30 11:18:30 UTC 2024 I: Submitting 20K b2/r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo.asc Wed Oct 30 11:18:31 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Oct 30 11:18:31 UTC 2024 I: Done submitting .buildinfo files. Wed Oct 30 11:18:31 UTC 2024 I: Removing signed r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo.asc files: removed './b1/r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo.asc' removed './b2/r-bioc-degnorm_1.14.0+ds-1_arm64.buildinfo.asc'