Mon Apr 22 01:57:37 UTC 2024 I: starting to build quicktree/trixie/arm64 on jenkins on '2024-04-22 01:57' Mon Apr 22 01:57:37 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/38608/console.log Mon Apr 22 01:57:37 UTC 2024 I: Downloading source for trixie/quicktree=2.5-6 --2024-04-22 01:57:37-- http://deb.debian.org/debian/pool/main/q/quicktree/quicktree_2.5-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2019 (2.0K) [text/prs.lines.tag] Saving to: ‘quicktree_2.5-6.dsc’ 0K . 100% 146M=0s 2024-04-22 01:57:37 (146 MB/s) - ‘quicktree_2.5-6.dsc’ saved [2019/2019] Mon Apr 22 01:57:37 UTC 2024 I: quicktree_2.5-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: quicktree Binary: quicktree, libquicktree-dev Architecture: any Version: 2.5-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/khowe/quicktree/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/quicktree Vcs-Git: https://salsa.debian.org/med-team/quicktree.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, dh-exec Package-List: libquicktree-dev deb libdevel optional arch=any quicktree deb science optional arch=any Checksums-Sha1: 7694e325400b1775b3682b14ada2a8ba301fbd94 39784 quicktree_2.5.orig.tar.gz 3a22d2a452231f1d91434dcf029b5df9fab4afc5 5872 quicktree_2.5-6.debian.tar.xz Checksums-Sha256: 731aa845ce3f1f0645bd0df2b54df75f78fce065d6a3ddc47fedf4bdcb11c248 39784 quicktree_2.5.orig.tar.gz ac8993853ea900963d4c854969e7d250b7f637029eada0b93a9c6aff197e01a4 5872 quicktree_2.5-6.debian.tar.xz Files: e7fcd348f16de227383461373565b8de 39784 quicktree_2.5.orig.tar.gz b4b7cee711ae26366501b2fd12cccd56 5872 quicktree_2.5-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEESjHbWh7kCWyHOZiAkDZJKUwz+bcFAmUcCi8ACgkQkDZJKUwz +bcWFQ/7BdvcQl+STGCGaLp5koHEmSwQoxR9QGWe/HtSW8h6oRj8UlnB4L67VXzs eFtG8BqT3QuSX9rGX09ZAVbeg9+2b5Q9GQCuNKbbRuyBJ4JDYwCnoPiL8DbHu1sX y4Doeh2pr67ST/SBTZBSg8E//tkFBAS2qJj+dYPFrH9AfytIzBY0MStLvOZlcH+W hj6htMPhk9FI4JgTpxuo/U/Q9fEshdgqHllEGfaJek+yp8/n2hMcx2rVKG/pK9Gf z5gFGlYi/JKTRJyPQarKCdqv4jUIN6dUPirxmWCEs1TU7Yw/Ti+b7bRSs9G36Em2 T5LfLZSroGQOVgHv8Exh1DwXV8wXr47LUscN4xG7jTMazyIawvftgybqmbJpSFBI 1a0qSnCR3paDhypLZ0J4SXPKp3iFJQVxvRh/iBQ2y3/Ahgia+0VVDW0fP0rYlOKl qLXOFSX0b580pgX/nUFiC9FROaa8jYM6oCzSaMZEubpAR4e67hXeZrIjeJRGwrmd 652jdmN9w8Ca36ySMUb2ZJJ1SaM28/WAmMVIzg74I99dffKBi1d5TUH0e3Dc0r9V jiGoa3SwzpNSHPPUJbYhi6IKyB/b4nM4RLKVf4D+RYd++BbT3x1Khh7eDa7X5y9S YR9F4yALkQx3/eXHcsi78++qlOIVVFMiMk4zxJFcgl6NVLPOmxw= =88qg -----END PGP SIGNATURE----- Mon Apr 22 01:57:37 UTC 2024 I: Checking whether the package is not for us Mon Apr 22 01:57:37 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Apr 22 01:57:37 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Apr 22 01:58:05 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 24 20:20:39 -12 2025 I: pbuilder-time-stamp: 1748161239 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [quicktree_2.5-6.dsc] I: copying [./quicktree_2.5.orig.tar.gz] I: copying [./quicktree_2.5-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 3 12:33:51 2023 gpgv: using RSA key 4A31DB5A1EE4096C87399880903649294C33F9B7 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./quicktree_2.5-6.dsc: no acceptable signature found dpkg-source: info: extracting quicktree in quicktree-2.5 dpkg-source: info: unpacking quicktree_2.5.orig.tar.gz dpkg-source: info: unpacking quicktree_2.5-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixMake.patch dpkg-source: info: applying create_lib.patch dpkg-source: info: applying fix_build_warnings.patch dpkg-source: info: applying add_CPPFLAGS.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/311234/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ac2a6fad42c3462ca99cef4104cd0f87' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='311234' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/pbuilderrc_tFZP --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/b1 --logfile b1/build.log quicktree_2.5-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 24 13:38 /bin -> usr/bin I: user script /srv/workspace/pbuilder/311234/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, dh-exec dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19930 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After unpacking 76.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-6+b1 [15.0 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3 [1127 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main arm64 libelf1 arm64 0.190-1+b1 [175 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dh-exec arm64 0.29 [25.4 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3 [198 kB] Fetched 18.9 MB in 0s (68.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19930 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-6+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-2+b1_arm64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3_arm64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.39.3-6_arm64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.0-3_arm64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.190-1+b1_arm64.deb ... Unpacking libelf1:arm64 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package dh-exec. Preparing to unpack .../31-dh-exec_0.29_arm64.deb ... Unpacking dh-exec (0.29) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.49.3_arm64.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:arm64 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:arm64 (0.190-1+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up dh-exec (0.29) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/quicktree-2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../quicktree_2.5-6_source.changes dpkg-buildpackage: info: source package quicktree dpkg-buildpackage: info: source version 2.5-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from quicktree-2.5/debian/source/options: --extend-diff-ignore=(^|/)(src\/quicktree\.c|src\/tree\.c)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/quicktree-2.5' dh_auto_clean make -j12 clean make[2]: Entering directory '/build/reproducible-path/quicktree-2.5' rm -f ./*.o quicktree make[2]: Leaving directory '/build/reproducible-path/quicktree-2.5' rm -f quicktree.1 rm -f libquicktree.a make[1]: Leaving directory '/build/reproducible-path/quicktree-2.5' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/quicktree.substvars debian/libquicktree-dev.substvars debian/files rm -fr -- debian/quicktree/ debian/tmp/ debian/libquicktree-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/quicktree-2.5' sed -i 's/expexted/expected/' src/tree.c sed -i 's/optio\\n/option/' src/quicktree.c dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/quicktree-2.5' cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./align.o ./src/align.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./cluster.o ./src/cluster.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./distancemat.o ./src/distancemat.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./options.o ./src/options.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./util.o ./src/util.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./sequence.o ./src/sequence.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./quicktree.o ./src/quicktree.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./buildtree.o ./src/buildtree.c cc -g -O2 -ffile-prefix-map=/build/reproducible-path/quicktree-2.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wunused-result -c -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -o ./tree.o ./src/tree.c cc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -o quicktree ./align.o ./cluster.o ./distancemat.o ./options.o ./util.o ./sequence.o ./quicktree.o ./buildtree.o ./tree.o -lm ar rc libquicktree.a ./buildtree.o ./cluster.o ./distancemat.o ./options.o ./util.o ./sequence.o ./tree.o make[2]: Leaving directory '/build/reproducible-path/quicktree-2.5' help2man -i debian/quicktree.htm --no-discard-stderr ./quicktree > quicktree.1 make[1]: Leaving directory '/build/reproducible-path/quicktree-2.5' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-XOSUi05W create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/quicktree.substvars debian/libquicktree-dev.substvars rm -fr -- debian/.debhelper/generated/quicktree/ debian/quicktree/ debian/tmp/ debian/.debhelper/generated/libquicktree-dev/ debian/libquicktree-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/quicktree-2.5/debian/tmp dh_install install -m0755 -d debian/quicktree/usr/bin cp --reflink=auto -a ./quicktree debian/quicktree/usr/bin/ install -m0755 -d debian/libquicktree-dev/usr/include/quicktree cp --reflink=auto -a ./include/align.h ./include/aln2dist.h ./include/aln2tree.h ./include/buildtree.h ./include/cluster.h ./include/dist2tree.h ./include/distancemat.h ./include/options.h ./include/sequence.h ./include/tree.h ./include/util.h ./include/version.h debian/libquicktree-dev/usr/include/quicktree/ install -m0755 -d debian/libquicktree-dev/usr/lib/aarch64-linux-gnu cp --reflink=auto -a ./libquicktree.a debian/libquicktree-dev/usr/lib/aarch64-linux-gnu/ dh_installdocs install -m0755 -d debian/quicktree/usr/share/doc/quicktree install -p -m0644 debian/copyright debian/quicktree/usr/share/doc/quicktree/copyright install -m0755 -d debian/libquicktree-dev/usr/share/doc/libquicktree-dev install -p -m0644 debian/copyright debian/libquicktree-dev/usr/share/doc/libquicktree-dev/copyright dh_installchangelogs install -m0755 -d debian/quicktree/usr/share/doc/quicktree install -p -m0644 debian/.debhelper/generated/quicktree/dh_installchangelogs.dch.trimmed debian/quicktree/usr/share/doc/quicktree/changelog.Debian install -m0755 -d debian/libquicktree-dev/usr/share/doc/libquicktree-dev install -p -m0644 debian/.debhelper/generated/libquicktree-dev/dh_installchangelogs.dch.trimmed debian/libquicktree-dev/usr/share/doc/libquicktree-dev/changelog.Debian dh_installexamples install -m0755 -d debian/quicktree/usr/share/doc/quicktree/examples cp --reflink=auto -a ./debian/tests/data/cysprot.stockholm debian/quicktree/usr/share/doc/quicktree/examples dh_installman install -m0755 -d debian/quicktree/usr/share/man/man1/ install -p -m0644 ./quicktree.1 debian/quicktree/usr/share/man/man1/quicktree.1 man-recode --to-code UTF-8 --suffix .dh-new debian/quicktree/usr/share/man/man1/quicktree.1 mv debian/quicktree/usr/share/man/man1/quicktree.1.dh-new debian/quicktree/usr/share/man/man1/quicktree.1 chmod 0644 -- debian/quicktree/usr/share/man/man1/quicktree.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/quicktree cd debian/libquicktree-dev chmod a-x usr/share/doc/quicktree/changelog.Debian usr/share/man/man1/quicktree.1 chmod a-x usr/share/doc/libquicktree-dev/changelog.Debian gzip -9nf usr/share/doc/quicktree/changelog.Debian usr/share/man/man1/quicktree.1 gzip -9nf usr/share/doc/libquicktree-dev/changelog.Debian cd '/build/reproducible-path/quicktree-2.5' cd '/build/reproducible-path/quicktree-2.5' dh_fixperms find debian/quicktree ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libquicktree-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/quicktree/usr/share/doc -type f -a -true -a ! -regex 'debian/quicktree/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libquicktree-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/quicktree/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libquicktree-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/quicktree/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/quicktree -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/quicktree/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/quicktree/usr/bin/quicktree dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libquicktree-dev/usr/lib/aarch64-linux-gnu/libquicktree.a install -m0755 -d debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/quicktree/usr/bin/quicktree debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/75/6afd8ea71d415071d886be5d46c364f4569e23.debug chmod 0644 -- debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/75/6afd8ea71d415071d886be5d46c364f4569e23.debug strip --remove-section=.comment --remove-section=.note debian/quicktree/usr/bin/quicktree objcopy --add-gnu-debuglink debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/75/6afd8ea71d415071d886be5d46c364f4569e23.debug debian/quicktree/usr/bin/quicktree install -m0755 -d debian/.debhelper/quicktree/dbgsym-root/usr/share/doc ln -s quicktree debian/.debhelper/quicktree/dbgsym-root/usr/share/doc/quicktree-dbgsym install -m0755 -d debian/.debhelper/quicktree dh_makeshlibs -a rm -f debian/quicktree/DEBIAN/shlibs rm -f debian/libquicktree-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/quicktree/DEBIAN dpkg-shlibdeps -Tdebian/quicktree.substvars debian/quicktree/usr/bin/quicktree dh_installdeb install -m0755 -d debian/quicktree/DEBIAN install -m0755 -d debian/libquicktree-dev/DEBIAN dh_gencontrol install -m0755 -d debian/quicktree/DEBIAN echo misc:Depends= >> debian/quicktree.substvars echo misc:Pre-Depends= >> debian/quicktree.substvars install -m0755 -d debian/.debhelper/quicktree/dbgsym-root/DEBIAN dpkg-gencontrol -pquicktree -ldebian/changelog -Tdebian/quicktree.substvars -cdebian/control -Pdebian/.debhelper/quicktree/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=quicktree-dbgsym "-DDepends=quicktree (= \${binary:Version})" "-DDescription=debug symbols for quicktree" -DBuild-Ids=756afd8ea71d415071d886be5d46c364f4569e23 -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libquicktree-dev/DEBIAN echo misc:Depends= >> debian/libquicktree-dev.substvars echo misc:Pre-Depends= >> debian/libquicktree-dev.substvars dpkg-gencontrol -plibquicktree-dev -ldebian/changelog -Tdebian/libquicktree-dev.substvars -cdebian/control -Pdebian/libquicktree-dev dpkg-gencontrol: warning: Depends field of package libquicktree-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libquicktree-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/quicktree/dbgsym-root/DEBIAN/control dpkg-gencontrol -pquicktree -ldebian/changelog -Tdebian/quicktree.substvars -cdebian/control -Pdebian/quicktree chmod 0644 -- debian/quicktree/DEBIAN/control dh_md5sums install -m0755 -d debian/quicktree/DEBIAN install -m0755 -d debian/libquicktree-dev/DEBIAN cd debian/quicktree >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libquicktree-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/quicktree/DEBIAN/md5sums install -m0755 -d debian/.debhelper/quicktree/dbgsym-root/DEBIAN chmod 0644 -- debian/libquicktree-dev/DEBIAN/md5sums cd debian/.debhelper/quicktree/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/quicktree/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/quicktree .. dpkg-deb --root-owner-group --build debian/.debhelper/quicktree/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libquicktree-dev .. dpkg-deb: building package 'quicktree' in '../quicktree_2.5-6_arm64.deb'. dpkg-deb: building package 'libquicktree-dev' in '../libquicktree-dev_2.5-6_arm64.deb'. dpkg-deb: building package 'quicktree-dbgsym' in '../quicktree-dbgsym_2.5-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../quicktree_2.5-6_arm64.buildinfo dpkg-genchanges --build=binary -O../quicktree_2.5-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from quicktree-2.5/debian/source/options: --extend-diff-ignore=(^|/)(src\/quicktree\.c|src\/tree\.c)$ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/311234 and its subdirectories I: Current time: Sat May 24 20:21:03 -12 2025 I: pbuilder-time-stamp: 1748161263 Mon Apr 22 01:58:06 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Mon Apr 22 01:58:06 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Mon Apr 22 01:58:59 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Mon Apr 22 01:59:01 UTC 2024 I: quicktree_2.5-6_arm64.changes: Format: 1.8 Date: Tue, 03 Oct 2023 19:27:53 +0700 Source: quicktree Binary: libquicktree-dev quicktree quicktree-dbgsym Architecture: arm64 Version: 2.5-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: libquicktree-dev - Neighbor-Joining algorithm for phylogenies (development) quicktree - Neighbor-Joining algorithm for phylogenies Closes: 1048270 Changes: quicktree (2.5-6) unstable; urgency=medium . * Team upload. * d/control: Update Standards-Version to 4.6.2 * d/rules: Clean libquicktree.a (Closes: #1048270) * d/source/options: Ignore changes to source files * d/copyright: Update year for debian/* files to 2023 * d/patches/fix_build_warnings.patch: Fix minor build warnings for incorrect format type and suggested parentheses * d/patches/add_CPPFLAGS.patch: Passes CPPFLAGS for hardening with D_FORTIFY_SOURCE Checksums-Sha1: 94d5198ad0f01a38354c05466b9172f7fc9d7ddf 25236 libquicktree-dev_2.5-6_arm64.deb c51ce12bff7ee064c8a6f864aba2b8684369957c 42328 quicktree-dbgsym_2.5-6_arm64.deb 8022aafe0415a0a6474ea6f3700368129daefb63 5762 quicktree_2.5-6_arm64.buildinfo f04ec7e63d4d7617344601587f5934b2eb531b4e 20136 quicktree_2.5-6_arm64.deb Checksums-Sha256: 48b3c7142cd327fda87cee5f06ee8b6a14585a340e769fbc890cbe549a3c2126 25236 libquicktree-dev_2.5-6_arm64.deb 2335b3c774d3eb1317c3228547094a58a84f590e3a439295348471f184d2b08f 42328 quicktree-dbgsym_2.5-6_arm64.deb d0a6e44d6d107fdec60c22b5d0777cb29daf4c7972398bc3fabffc372841c746 5762 quicktree_2.5-6_arm64.buildinfo 5a875f4f77634bb62724c5cc6055a4c18278b9484ce3f5e3c04d20f30d0c311a 20136 quicktree_2.5-6_arm64.deb Files: 87ee4ab06a3526506107858e86de8044 25236 libdevel optional libquicktree-dev_2.5-6_arm64.deb 0519234eac36b1a6630b064ccca84e11 42328 debug optional quicktree-dbgsym_2.5-6_arm64.deb d7fdc701a0a8368b0613748bddc8980e 5762 science optional quicktree_2.5-6_arm64.buildinfo e552662673989df29d061e39201630b1 20136 science optional quicktree_2.5-6_arm64.deb Mon Apr 22 01:59:02 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_5-38608.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/quicktree_2.5-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/quicktree_2.5-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/quicktree_2.5-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/b1/quicktree_2.5-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.v2tJIO20/b2/quicktree_2.5-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.325s) 0.325s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 626ms CPU time consumed: 627ms Mon Apr 22 01:59:03 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 22 01:59:03 UTC 2024 I: quicktree from trixie built successfully and reproducibly on arm64. Mon Apr 22 01:59:04 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Apr 22 01:59:04 UTC 2024 I: Submitting 8.0K b1/quicktree_2.5-6_arm64.buildinfo.asc Mon Apr 22 01:59:05 UTC 2024 I: Submitting 8.0K b2/quicktree_2.5-6_arm64.buildinfo.asc Mon Apr 22 01:59:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 22 01:59:06 UTC 2024 I: Done submitting .buildinfo files. Mon Apr 22 01:59:06 UTC 2024 I: Removing signed quicktree_2.5-6_arm64.buildinfo.asc files: removed './b1/quicktree_2.5-6_arm64.buildinfo.asc' removed './b2/quicktree_2.5-6_arm64.buildinfo.asc'