Thu Jul 4 12:16:04 UTC 2024 I: starting to build q2-alignment/trixie/arm64 on jenkins on '2024-07-04 12:15' Thu Jul 4 12:16:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/49014/console.log Thu Jul 4 12:16:04 UTC 2024 I: Downloading source for trixie/q2-alignment=2024.5.0-1 --2024-07-04 12:16:04-- http://deb.debian.org/debian/pool/main/q/q2-alignment/q2-alignment_2024.5.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) [text/prs.lines.tag] Saving to: ‘q2-alignment_2024.5.0-1.dsc’ 0K .. 100% 302M=0s 2024-07-04 12:16:04 (302 MB/s) - ‘q2-alignment_2024.5.0-1.dsc’ saved [2221/2221] Thu Jul 4 12:16:04 UTC 2024 I: q2-alignment_2024.5.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: q2-alignment Binary: q2-alignment Architecture: all Version: 2024.5.0-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Steffen Moeller Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-alignment Vcs-Git: https://salsa.debian.org/med-team/q2-alignment.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-skbio, python3-pytest-cov, qiime (>= 2024.5), q2-types (>= 2024.5), mafft Package-List: q2-alignment deb science optional arch=all Checksums-Sha1: 45b99ac71ce3da427dc6a77488ab46e1ef613361 306640 q2-alignment_2024.5.0.orig.tar.xz fb5bab6175e6aae3b051f7a5c5a383efa1fc77a8 6808 q2-alignment_2024.5.0-1.debian.tar.xz Checksums-Sha256: b1cccb51aa385793b9168ffd8c03ae2916e2ee76ea488ab12badcfa73569d99b 306640 q2-alignment_2024.5.0.orig.tar.xz 709a2294cd35ce5706066b56372156d63b0f2c5f2d0366902264f1cb0daefe78 6808 q2-alignment_2024.5.0-1.debian.tar.xz Files: 558a4a17f2aea8574edc7e4d0129546a 306640 q2-alignment_2024.5.0.orig.tar.xz e99389b3a3179865dd557cdaa4a423d3 6808 q2-alignment_2024.5.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmZ76QAACgkQPCZ2P2xn 5uIqaBAAgufUaC2g/inl0v30VZTHWZIdkdrsZjzi1z4KmmM5CXSHxWCuDAg3DDs6 vJrfztwAGW6zT22VnLBO7Uy4V4PylVimTo3BZjh46Ur5dpkLAHnI1eYlvihomqmB 1zkr8qitlzpdkrpMcZxmIrgELT9nDYYoR1f+eFwUbNxaXmjSRRQle8i7Nna1W5wx Pp9/McOt4YrwQs5HN3TqR2E+myPTztKM54NtnAAVUp09Cj8S04ycSAEPzOJZnBpl VtDZPLAra5dMqSytY8iVipvriQIrvvT2nS2vsHouzR4rz086QnziPdmcGqxHpdZP tWNR1W1b2AdLtJ6xUtNhGCdln++bc+PmfCwT7PFCDiGWoc7kA4rbuBoFYUqcBgrn WSEBRqrt1ZHLz6ynuUiaZphnkVcEVcriY/MB8Nenae+fz6crd2Qpkqe19PxChK/W zlmxZf+IqCbfKNslyfZigBLcE8W64qKVKsPcx/dQpsIwbCoSXNnJZdIAv4MoEdH+ 8PtO7ibYaVqd0nW+qQQxl08d101yQXuFLsBjVG1JkROZaUZIIVQD7jnYAXWbmmOc td7swxReJaCZoRf6xNxCu2iJCuXdvq63bnuN41crpKiI1qGgCucV9lwhkKsdnNDd 2hZ5zxeCNpqmBPrZqf/pKArCqQwJ3Js3kbbynv6ql82S/yCWNFM= =jlMZ -----END PGP SIGNATURE----- Thu Jul 4 12:16:04 UTC 2024 I: Checking whether the package is not for us Thu Jul 4 12:16:05 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Jul 4 12:16:05 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Jul 4 12:18:52 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 6 06:39:07 -12 2025 I: pbuilder-time-stamp: 1754505547 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [q2-alignment_2024.5.0-1.dsc] I: copying [./q2-alignment_2024.5.0.orig.tar.xz] I: copying [./q2-alignment_2024.5.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 26 10:10:08 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-alignment_2024.5.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-alignment in q2-alignment-2024.5.0 dpkg-source: info: unpacking q2-alignment_2024.5.0.orig.tar.xz dpkg-source: info: unpacking q2-alignment_2024.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying configparser.patch dpkg-source: info: applying py.test-3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2906986/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='84eb22af4f8f4bcebb6bacaa6f4a7090' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2906986' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/pbuilderrc_XWMl --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/b1 --logfile b1/build.log q2-alignment_2024.5.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-22-cloud-arm64 #1 SMP Debian 6.1.94-1 (2024-06-21) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2906986/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-skbio, python3-pytest-cov, qiime (>= 2024.5), q2-types (>= 2024.5), mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on q2-types (>= 2024.5); however: Package q2-types is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnorm1t64{a} libopenblas0{a} libopenblas0-pthread{a} libpgm-5.3-0t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsodium23{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyajl2{a} libyaml-0-2{a} libzmq5{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-bcrypt{a} python3-bibtexparser{a} python3-biom-format{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coverage{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-ijson{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jinja2{a} python3-jwt{a} python3-lib2to3{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-nacl{a} python3-natsort{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-paramiko{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-requests{a} python3-scipy{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-skbio{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zmq{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} q2-types{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx node-jquery publicsuffix python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-invoke python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pil python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-table q2-metadata q2-quality-filter q2cli q2templates r-cran-plotly ruby wget 0 packages upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After unpacking 603 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.4-1 [804 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.4-1 [1918 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.2-1 [1327 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-1 [197 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-9 [95.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-2 [1394 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-1 [723 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.16 [88.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-1 [1526 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.16 [891 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 56 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.2-1 [31.8 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.2-1 [80.4 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.2-1 [307 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.2-1 [125 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-1 [173 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.62.1-1 [71.2 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14-20240330-1 [361 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1 [7664 B] Get: 75 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.3 [1035 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.3 [60.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-metadata all 12-4 [6532 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libopenblas0-pthread arm64 0.3.27+ds-2 [4579 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b1 [10.3 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1 [204 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libopenblas0 arm64 0.3.27+ds-2 [39.0 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1 [151 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.4-1 [1886 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libsodium23 arm64 1.0.18-1+b1 [118 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-14+b1 [19.6 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1+b1 [221 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libyajl2 arm64 2.1.0-5+b1 [22.1 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libzmq5 arm64 4.3.5-1+b2 [251 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 mafft arm64 7.505-1 [933 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1472 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.4-1 [664 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.11.8-1 [1056 B] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-bcrypt arm64 4.1.2-1 [226 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.2 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-10 [4221 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.11.0-2 [1441 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.11.0-2 [14.5 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.1.7-1 [94.0 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.1.4+dfsg-8 [6609 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.12.0-2 [18.8 MB] Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-biom-format arm64 2.1.16-1 [173 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 python3-blinker all 1.8.2-1 [13.1 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2024.6.2-1 [157 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-cffi-backend arm64 1.16.0-2+b2 [109 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 python3-coverage arm64 7.2.7+dfsg1-1+b1 [170 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 python3-cryptography arm64 42.0.5-2 [1050 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-dill all 0.3.8-1 [81.7 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-filelock all 3.15.4-1 [12.6 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1 [14.6 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3-werkzeug all 3.0.3-1 [207 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-flask all 3.0.3-1 [104 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-greenlet arm64 3.0.1-3 [171 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-sqlalchemy all 1.4.50+ds1-1 [1009 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python3-flask-sqlalchemy all 3.0.3-1 [35.5 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-psutil arm64 5.9.8-2 [225 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 python3-public all 4.1.0-1 [6960 B] Get: 136 http://deb.debian.org/debian trixie/main arm64 python3-flufl.lock all 8.1.0-1 [15.5 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-1 [72.9 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 python3-jwt all 2.7.0-1 [29.7 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.6-2.1 [38.6 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-globus-sdk all 3.41.0-1 [247 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3-hdmedians arm64 0.14.2-5.1 [142 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-ijson arm64 3.3.0-1 [39.6 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.2.1-1 [1767 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 python3-nacl arm64 1.5.0-4 [53.6 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 150 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 python3-paramiko all 3.4.0-1 [142 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 python3-setproctitle arm64 1.3.3-1+b2 [19.5 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 python3-tblib all 3.0.0-5 [13.7 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.1.5-1 [35.0 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 python3-py all 1.11.0-2 [88.7 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 python3-zmq arm64 24.0.1-5+b1 [329 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 python3-parsl all 2024.05.27+ds-1 [278 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 python3-platformdirs all 4.2.1-1 [16.0 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.2.2-2 [248 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python3-skbio arm64 0.6.1-2 [1415 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3-tomlkit all 0.12.5-1 [42.0 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3-tzlocal all 5.2-1.1 [23.7 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.1-2 [153 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 qiime all 2024.5.0-1 [304 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 q2-types all 2024.5.0-1 [5531 kB] Fetched 111 MB in 1s (126 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20144 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21136 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../001-libpython3.12-minimal_3.12.4-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.4-1_arm64.deb ... Unpacking python3.12-minimal (3.12.4-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.2.2-1_arm64.deb ... Unpacking openssl (3.2.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-1_arm64.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.1-9_arm64.deb ... Unpacking bsdextrautils (2.40.1-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../013-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.12.1-2_arm64.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-1_all.deb ... Unpacking autopoint (0.22.5-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.16_all.deb ... Unpacking libdebhelper-perl (13.16) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Unpacking python3-yaml (6.0.1-2) ... Selecting previously unselected package qiime. Preparing to unpack .../151-qiime_2024.5.0-1_all.deb ... Unpacking qiime (2024.5.0-1) ... Selecting previously unselected package q2-types. Preparing to unpack .../152-q2-types_2024.5.0-1_all.deb ... Unpacking q2-types (2024.5.0-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up javascript-common (11+nmu1) ... Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libsodium23:arm64 (1.0.18-1+b1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.1-9) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up mafft (7.505-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libdebhelper-perl (13.16) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libpython3.12-minimal:arm64 (3.12.4-1) ... Setting up libyajl2:arm64 (2.1.0-5+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.62.1-1) ... Setting up gettext-base (0.22.5-1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libaec0:arm64 (1.1.3-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libkrb5support0:arm64 (1.21.2-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Aug 6 18:39:54 UTC 2025. Universal Time is now: Wed Aug 6 18:39:54 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:arm64 (3.6-4+b1) ... Setting up autopoint (0.22.5-1) ... Setting up libk5crypto3:arm64 (1.21.2-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.2-1) ... Setting up libssh2-1t64:arm64 (1.11.0-5) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up openssl (3.2.2-1) ... Setting up libssw0:arm64 (1.1-14+b1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libsz2:arm64 (1.1.3-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.4-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-1) ... Setting up libopenblas0-pthread:arm64 (0.3.27+ds-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libgssapi-krb5-2:arm64 (1.21.2-1) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up libopenblas0:arm64 (0.3.27+ds-2) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:arm64 (1.1.35-1+b1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libzmq5:arm64 (4.3.5-1+b2) ... Setting up libpython3.12-stdlib:arm64 (3.12.4-1) ... Setting up libcurl4t64:arm64 (8.8.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up python3.12 (3.12.4-1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.3) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.16) ... Setting up python3 (3.11.8-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.6.2-1) ... Setting up python3-werkzeug (3.0.3-1) ... Setting up python3-dill (0.3.8-1) ... Setting up python3-greenlet (3.0.1-3) ... Setting up python3-setproctitle:arm64 (1.3.3-1+b2) ... Setting up python3-idna (3.6-2.1) ... Setting up python3-typing-extensions (4.12.2-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.2.1-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-tomlkit (0.12.5-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-cffi-backend:arm64 (1.16.0-2+b2) ... Setting up python3-blinker (1.8.2-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-filelock (3.15.4-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-tblib (3.0.0-5) ... Setting up python3-py (1.11.0-2) ... Setting up python3-ijson (3.3.0-1) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-public (4.1.0-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.2.2-2) ... Setting up python3-bcrypt (4.1.2-1) ... Setting up python3-typeguard (4.1.5-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.11.8-1) ... Setting up python3-coverage (7.2.7+dfsg1-1+b1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-sqlalchemy (1.4.50+ds1-1) ... Setting up python3-flufl.lock (8.1.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-zmq (24.0.1-5+b1) ... Setting up python3-cryptography (42.0.5-2) ... Setting up python3-requests (2.31.0+dfsg-2) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-hdmedians (0.14.2-5.1) ... Setting up python3-nacl (1.5.0-4) ... Setting up python3-globus-sdk (3.41.0-1) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.12.0-2) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-8) ... Setting up python3-h5py-serial (3.11.0-2) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-h5py (3.11.0-2) ... Setting up python3-paramiko (3.4.0-1) ... Setting up python3-flask-sqlalchemy (3.0.3-1) ... Setting up python3-parsl (2024.05.27+ds-1) ... Setting up qiime (2024.5.0-1) ... Setting up python3-biom-format (2.1.16-1) ... Setting up python3-skbio (0.6.1-2) ... Setting up q2-types (2024.5.0-1) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/q2-alignment-2024.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../q2-alignment_2024.5.0-1_source.changes dpkg-buildpackage: info: source package q2-alignment dpkg-buildpackage: info: source version 2024.5.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from q2-alignment-2024.5.0/debian/source/options: --extend-diff-ignore=^[^/]+.(egg-info|dist-info)/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment copying q2_alignment/plugin_setup.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment copying q2_alignment/_version.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment copying q2_alignment/_mafft.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment copying q2_alignment/_filter.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment copying q2_alignment/__init__.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment creating /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests copying q2_alignment/tests/test_mafft.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests copying q2_alignment/tests/test_filter.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests copying q2_alignment/tests/__init__.py -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests copying q2_alignment/citations.bib -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment creating /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/unaligned-long-ids.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/unaligned-duplicate-ids.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/unaligned-dna-sequences-1.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/aligned-long-ids.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/aligned-duplicate-ids-2.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/aligned-duplicate-ids-1.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data copying q2_alignment/tests/data/aligned-dna-sequences-1.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data UPDATING /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_version.py set /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_version.py to '2024.5.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/q2-alignment-2024.5.0' dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 --cov=q2_alignment" || true I: pybuild pybuild:308: python3.11 setup.py develop --install-dir /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build running develop /usr/lib/python3/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! easy_install.initialize_options(self) /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running egg_info creating q2_alignment.egg-info writing q2_alignment.egg-info/PKG-INFO writing dependency_links to q2_alignment.egg-info/dependency_links.txt writing entry points to q2_alignment.egg-info/entry_points.txt writing top-level names to q2_alignment.egg-info/top_level.txt writing manifest file 'q2_alignment.egg-info/SOURCES.txt' reading manifest file 'q2_alignment.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'q2_alignment.egg-info/SOURCES.txt' running build_ext Creating /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2-alignment.egg-link (link to .) Adding q2-alignment 2024.5.0 to easy-install.pth file Installed /build/reproducible-path/q2-alignment-2024.5.0 Processing dependencies for q2-alignment==2024.5.0 Finished processing dependencies for q2-alignment==2024.5.0 I: pybuild base:311: cd /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build; py.test-3 --cov=q2_alignment ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.2.2, pluggy-1.5.0 rootdir: /build/reproducible-path/q2-alignment-2024.5.0 plugins: cov-5.0.0, typeguard-4.1.5 collected 28 items q2_alignment/tests/test_filter.py ............. [ 46%] q2_alignment/tests/test_mafft.py FFFFFFFFFFFFFFF [100%] =================================== FAILURES =================================== _____________________ MafftTests.test_duplicate_input_ids ______________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. __________________ MafftTests.test_long_ids_are_not_truncated __________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ____________________________ MafftTests.test_mafft _____________________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ___________________ MafftTests.test_mafft_parttree_exception ___________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. _____________________ MafftTests.test_multithreaded_mafft ______________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. _____ MafftAddTests.test_duplicate_input_ids_across_aligned_and_unaligned ______ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ______________ MafftAddTests.test_duplicate_input_ids_in_aligned _______________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. _____________ MafftAddTests.test_duplicate_input_ids_in_unaligned ______________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ____________ MafftAddTests.test_long_ids_are_not_truncated_aligned _____________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ___________ MafftAddTests.test_long_ids_are_not_truncated_unaligned ____________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. _________________________ MafftAddTests.test_mafft_add _________________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ______________________ MafftAddTests.test_mafft_add_flags ______________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. ____________________ MafftAddTests.test_mafft_add_fragments ____________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. _______________________ RunCommandTests.test_failed_run ________________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. _________________ RunCommandTests.test_failed_run_not_verbose __________________ /usr/lib/python3/dist-packages/qiime2/plugin/testing.py:66: in setUp self.fail('%s is not a registered QIIME 2 plugin.' % package) E AssertionError: q2_alignment is not a registered QIIME 2 plugin. =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13 /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.11.9-final-0 ----------- Name Stmts Miss Cover ------------------------------------------------------- q2_alignment/__init__.py 6 0 100% q2_alignment/_filter.py 54 2 96% q2_alignment/_mafft.py 56 48 14% q2_alignment/_version.py 4 0 100% q2_alignment/plugin_setup.py 8 8 0% q2_alignment/tests/__init__.py 0 0 100% q2_alignment/tests/test_filter.py 81 0 100% q2_alignment/tests/test_mafft.py 153 119 22% ------------------------------------------------------- TOTAL 362 177 51% =========================== short test summary info ============================ FAILED q2_alignment/tests/test_mafft.py::MafftTests::test_duplicate_input_ids FAILED q2_alignment/tests/test_mafft.py::MafftTests::test_long_ids_are_not_truncated FAILED q2_alignment/tests/test_mafft.py::MafftTests::test_mafft - AssertionEr... FAILED q2_alignment/tests/test_mafft.py::MafftTests::test_mafft_parttree_exception FAILED q2_alignment/tests/test_mafft.py::MafftTests::test_multithreaded_mafft FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_duplicate_input_ids_across_aligned_and_unaligned FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_duplicate_input_ids_in_aligned FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_duplicate_input_ids_in_unaligned FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_long_ids_are_not_truncated_aligned FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_long_ids_are_not_truncated_unaligned FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_mafft_add - Asse... FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_mafft_add_flags FAILED q2_alignment/tests/test_mafft.py::MafftAddTests::test_mafft_add_fragments FAILED q2_alignment/tests/test_mafft.py::RunCommandTests::test_failed_run - A... FAILED q2_alignment/tests/test_mafft.py::RunCommandTests::test_failed_run_not_verbose =================== 15 failed, 13 passed, 1 warning in 4.85s =================== E: pybuild pybuild:389: test: plugin custom failed with: exit code=1: cd /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build; py.test-3 --cov=q2_alignment dh_auto_test: error: pybuild --test -i python{version} -p "3.12 3.11" -s custom "--test-args=cd {build_dir}; py.test-3 --cov=q2_alignment" returned exit code 13 make[1]: Leaving directory '/build/reproducible-path/q2-alignment-2024.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/q2-alignment/ -O--buildsystem=pybuild I: pybuild pybuild:308: rm -rvf /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2-alignment.egg-* /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/site.py /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/.coverage* /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/easy-install.pth removed '/build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2-alignment.egg-link' removed '/build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/.coverage' removed '/build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/easy-install.pth' I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_version.py set /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_version.py to '2024.5.0' running install_lib creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11 creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_version.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/__pycache__/_version.cpython-311.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/__pycache__/_filter.cpython-311.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/__pycache__/_mafft.cpython-311.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/citations.bib -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/__pycache__/test_mafft.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/__pycache__/test_filter.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/__pycache__ copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/__pycache__ creating /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/aligned-dna-sequences-1.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/aligned-duplicate-ids-1.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/aligned-duplicate-ids-2.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/aligned-long-ids.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/unaligned-dna-sequences-1.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/unaligned-duplicate-ids.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/data/unaligned-long-ids.fasta -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/data copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/__init__.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/test_filter.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/tests/test_mafft.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/__init__.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_filter.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/_mafft.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment copying /build/reproducible-path/q2-alignment-2024.5.0/.pybuild/cpython3_3.11/build/q2_alignment/plugin_setup.py -> /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/_version.py to _version.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/test_filter.py to test_filter.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/tests/test_mafft.py to test_mafft.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/_filter.py to _filter.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/_mafft.py to _mafft.cpython-311.pyc byte-compiling /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment/plugin_setup.py to plugin_setup.cpython-311.pyc running install_egg_info running egg_info writing q2_alignment.egg-info/PKG-INFO writing dependency_links to q2_alignment.egg-info/dependency_links.txt writing entry points to q2_alignment.egg-info/entry_points.txt writing top-level names to q2_alignment.egg-info/top_level.txt reading manifest file 'q2_alignment.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'q2_alignment.egg-info/SOURCES.txt' Copying q2_alignment.egg-info to /build/reproducible-path/q2-alignment-2024.5.0/debian/q2-alignment/usr/lib/python3.11/dist-packages/q2_alignment-2024.5.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package q2-alignment: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'q2-alignment' in '../q2-alignment_2024.5.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../q2-alignment_2024.5.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../q2-alignment_2024.5.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from q2-alignment-2024.5.0/debian/source/options: --extend-diff-ignore=^[^/]+.(egg-info|dist-info)/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2906986 and its subdirectories I: Current time: Wed Aug 6 06:41:50 -12 2025 I: pbuilder-time-stamp: 1754505710 Thu Jul 4 12:18:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Thu Jul 4 12:18:53 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Thu Jul 4 12:20:49 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Thu Jul 4 12:20:50 UTC 2024 I: q2-alignment_2024.5.0-1_arm64.changes: Format: 1.8 Date: Wed, 26 Jun 2024 12:03:17 +0200 Source: q2-alignment Binary: q2-alignment Architecture: all Version: 2024.5.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: q2-alignment - QIIME 2 plugin for generating and manipulating alignments Changes: q2-alignment (2024.5.0-1) unstable; urgency=medium . * Team upload. * d/{copyright,source/options}: ignore egg-info, don't exclude it * d/patches/configparser.patch: copy from qiime * Regenerate debian/control from debian/control.in (routine-update) * Only build for Python 3.11 until upstream catches up with Python 3.12. Checksums-Sha1: b47b3c12ba8b2a0fd6f5eba4dbb3b920338da797 12068 q2-alignment_2024.5.0-1_all.deb 75b8cd61be7b83af5073f988a4087882a074056f 9459 q2-alignment_2024.5.0-1_arm64.buildinfo Checksums-Sha256: 401fd0adab8faacee1990bf61cc791d4ca40904ec66ed33fc00abe2eb1298efe 12068 q2-alignment_2024.5.0-1_all.deb d7a681b844fb419a19a4c69e47d4c841b1b26b761e282ffa6cf19c8cfb2ff667 9459 q2-alignment_2024.5.0-1_arm64.buildinfo Files: 993365709ef0b450c4a53099c38b3c54 12068 science optional q2-alignment_2024.5.0-1_all.deb f973496941ab35e1226253ad3d407a47 9459 science optional q2-alignment_2024.5.0-1_arm64.buildinfo Thu Jul 4 12:20:51 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_5-49014.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/q2-alignment_2024.5.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/q2-alignment_2024.5.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/q2-alignment_2024.5.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/b1/q2-alignment_2024.5.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.OlwEToSf/b2/q2-alignment_2024.5.0-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.437s) 0.437s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 830ms CPU time consumed: 821ms Thu Jul 4 12:20:52 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 4 12:20:52 UTC 2024 I: q2-alignment from trixie built successfully and reproducibly on arm64. Thu Jul 4 12:20:54 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jul 4 12:20:54 UTC 2024 I: Submitting 12K b1/q2-alignment_2024.5.0-1_arm64.buildinfo.asc Thu Jul 4 12:20:56 UTC 2024 I: Submitting 12K b2/q2-alignment_2024.5.0-1_arm64.buildinfo.asc Thu Jul 4 12:20:57 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 4 12:20:57 UTC 2024 I: Done submitting .buildinfo files. Thu Jul 4 12:20:57 UTC 2024 I: Removing signed q2-alignment_2024.5.0-1_arm64.buildinfo.asc files: removed './b1/q2-alignment_2024.5.0-1_arm64.buildinfo.asc' removed './b2/q2-alignment_2024.5.0-1_arm64.buildinfo.asc'