Tue Nov 26 12:12:53 UTC 2024 I: starting to build pbsuite/trixie/arm64 on jenkins on '2024-11-26 12:12' Tue Nov 26 12:12:53 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/46583/console.log Tue Nov 26 12:12:53 UTC 2024 I: Downloading source for trixie/pbsuite=15.8.24+dfsg-7 --2024-11-26 12:12:53-- http://deb.debian.org/debian/pool/main/p/pbsuite/pbsuite_15.8.24%2bdfsg-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2281 (2.2K) [text/prs.lines.tag] Saving to: ‘pbsuite_15.8.24+dfsg-7.dsc’ 0K .. 100% 323M=0s 2024-11-26 12:12:53 (323 MB/s) - ‘pbsuite_15.8.24+dfsg-7.dsc’ saved [2281/2281] Tue Nov 26 12:12:53 UTC 2024 I: pbsuite_15.8.24+dfsg-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbsuite Binary: pbsuite, python3-pbsuite-utils, pbjelly, pbhoney, python3-pbbanana Architecture: all Version: 15.8.24+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: http://sourceforge.net/projects/pb-jelly Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pbsuite Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all Package-List: pbhoney deb science optional arch=all pbjelly deb science optional arch=all pbsuite deb metapackages optional arch=all python3-pbbanana deb python optional arch=all python3-pbsuite-utils deb python optional arch=all Checksums-Sha1: 83f478b44516f962d98520eba8109da904f84f11 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 07d58cc20fba31059b7e746d970efea746cb2d04 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz Checksums-Sha256: f58813e9e3ed9e3f161de8460ed1e1d86be5a817cbeb0e041cc94cbd3e9e3aab 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 21af1c58b49aa955f7d457eec7600c026537229bac726c06a27851260780910d 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz Files: c6c55284fb59c4dce96fbc9c6d20fda3 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz eda8be478c389236c85c21b9e00c31ba 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAg4tMUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGKcw//cygdY7QMPhjgqgZ/ue6DXrruGi8y W0hzwGvJ9TxjnYKJXLzHx3JLd9449c75W8CpKYdJqCEzKcLbODE7jFUYQ/YIZQoW nednRlEBjC5Yhz81ed6K25qVruGZjRKqmYcVyJP35K+Cc/nQmytQNe/59T/6JrHa GF+6UOdL4KU3A13vXk6IkQLabH5H7Zu7eFnHfODkwoUjBHBFikRIkHG5PGD1hCyk GFP6VpHzUwOdlJBghFc31Ezw05Iw/XipoCbeWLY6yyn8ZP2t0O8VAX13c44eMkzd 7n1dXbotjZGASKxWoCl8ZiDiHohj3kLnL/v0sCwfN+sfknnV+T2wDaAChIuLnWyJ y6x+F6dOyn/lEPZxbyPL6Dvfrx4YdWxvzgImbt9dITE6GT4f1bBsADquXXzheiwI 7UZB823ia0BihnlDIWjzNWEjqtiOOkol9PtInfQubeyF9myeytgn+eD4sDHsmyLk UFJ7162us6JXBGhdvOfmfpYri6+vkGkqSeo0ICjn7hRAgReYl0fwIePS6MaCw2D8 HS+FCo8UgZbRJTzAWCPJhQ9B644QtmBYBw8RmZCCzyhNe35DYdtXlOGNptIOintS F8vKnX8yuQod0ynLC4Y5hF62PHq7mvIPBfNmrDpMrtZDvL9vYLWeRHNKRQQuYHqn WOOzlrz8zVvmgI8= =yuMS -----END PGP SIGNATURE----- Tue Nov 26 12:12:53 UTC 2024 I: Checking whether the package is not for us Tue Nov 26 12:12:53 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Tue Nov 26 12:12:53 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Tue Nov 26 12:13:37 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 26 00:12:55 -12 2024 I: pbuilder-time-stamp: 1732623175 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsuite_15.8.24+dfsg-7.dsc] I: copying [./pbsuite_15.8.24+dfsg.orig.tar.xz] I: copying [./pbsuite_15.8.24+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Feb 8 07:05:55 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsuite_15.8.24+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting pbsuite in pbsuite-15.8.24+dfsg dpkg-source: info: unpacking pbsuite_15.8.24+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsuite_15.8.24+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-error.patch dpkg-source: info: applying intervaltree-import-statement.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying fix-shebang-lines.patch dpkg-source: info: applying blasr-5.patch dpkg-source: info: applying intermediate-reads-files.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_py3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4027388/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='739a28ad1b4b4cc985ae005a4301b0a5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4027388' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/pbuilderrc_bjBU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/b1 --logfile b1/build.log pbsuite_15.8.24+dfsg-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4027388/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Fetched 27.4 MB in 0s (112 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20407 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_clean find -name "*.pyc" -delete make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_build python3 -m compileall pbsuite pbsuite/banana/MakeOverlapTable.py:10: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeOverlapTable.py:26: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/MakeReciprocal.py:12: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeReciprocal.py:36: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/OLCAssembly.py:277: SyntaxWarning: invalid escape sequence '\:' _exe("grep iid alignments.overlaps_realigned | cut -f2 -d\: > internal.ids") pbsuite/banana/OLCAssembly.py:304: SyntaxWarning: invalid escape sequence '\d' getContigName = re.compile("(\d+)_contig") pbsuite/banana/chunkyBlasr.py:123: SyntaxWarning: invalid escape sequence '\ ' "awk -F\ '{{if ($1 < 500) print $2}}' | " pbsuite/honey/Force.py:523: SyntaxWarning: invalid escape sequence '\?' forceRe = re.compile("(?PTrue|False|\?)\[(?P.*)\|(?P.*)\]") pbsuite/honey/bampie.py:85: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/honey/bampie.py:166: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P[01])(?P.*):(?P\d+)__(?P.*)$") pbsuite/honey/realign.py:199: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/jelly/Extraction.py:59: SyntaxWarning: invalid escape sequence '\d' getSub = re.compile("(.*)##(\d+)#(\d+)##$") pbsuite/jelly/Extraction.py:326: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/jelly/Setup.py:16: SyntaxWarning: invalid escape sequence '\|' refParser = re.compile("(.*)\|(ref\d{7})/?(\d+)?$") pbsuite/jelly/Stages.py:82: SyntaxWarning: invalid escape sequence '\d' nprocRe = re.compile("--nproc (\d+)") pbsuite/jelly/m4pie.py:17: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/jelly/m4pie.py:108: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P\d+)__(?P.*)$") pbsuite/utils/BamStat.py:75: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/utils/FileHandlers.py:49: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:60: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:87: SyntaxWarning: invalid escape sequence '\s' self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip()))) pbsuite/utils/FileHandlers.py:475: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/utils/FileHandlers.py:499: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/FileHandlers.py:609: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/VCFIO.py:110: SyntaxWarning: invalid escape sequence '\s' METARE = re.compile(('##\s*(?P\w+)\s*=\s*\<\s*ID\s*=\s*(?P\w+)\s*' pbsuite/utils/VCFIO.py:111: SyntaxWarning: invalid escape sequence '\s' ',\s*(Number\s*=\s*(?P[0-9.])\s*,' pbsuite/utils/VCFIO.py:112: SyntaxWarning: invalid escape sequence '\s' '\s*Type\s*=\s*(?P\w+)\s*,)?' pbsuite/utils/VCFIO.py:113: SyntaxWarning: invalid escape sequence '\s' '\s*Description\s*=\s*"(?P.*)"\s*\>\s*'),\ pbsuite/utils/jellyoutputrename.py:22: SyntaxWarning: invalid escape sequence '\d' regex = re.compile("ref\d{7}") Listing 'pbsuite'... Compiling 'pbsuite/__init__.py'... Listing 'pbsuite/banana'... Compiling 'pbsuite/banana/Banana.py'... Compiling 'pbsuite/banana/MakeOverlapTable.py'... Compiling 'pbsuite/banana/MakeReciprocal.py'... Compiling 'pbsuite/banana/OLCAssembly.py'... Compiling 'pbsuite/banana/Polish.py'... Compiling 'pbsuite/banana/SeqAsm.py'... Compiling 'pbsuite/banana/__init__.py'... Compiling 'pbsuite/banana/chunkyBlasr.py'... Listing 'pbsuite/honey'... Compiling 'pbsuite/honey/ComplexResolver.py'... Compiling 'pbsuite/honey/Force.py'... Compiling 'pbsuite/honey/HSpots.py'... Compiling 'pbsuite/honey/Honey.py'... Compiling 'pbsuite/honey/SVMachines.py'... Compiling 'pbsuite/honey/TGraf.py'... Compiling 'pbsuite/honey/Valid.py'... Compiling 'pbsuite/honey/__init__.py'... Compiling 'pbsuite/honey/bakH.py'... Compiling 'pbsuite/honey/bampie.py'... Compiling 'pbsuite/honey/massivePhrap.py'... Compiling 'pbsuite/honey/realign.py'... Compiling 'pbsuite/honey/recallSpots.py'... Compiling 'pbsuite/honey/spotH5Merge.py'... Compiling 'pbsuite/honey/spotH5dump.py'... Compiling 'pbsuite/honey/spotToBed.py'... Compiling 'pbsuite/honey/spotToVCF.py'... Listing 'pbsuite/honey/svm'... Listing 'pbsuite/honey/svm/ecoli_jul1.svm'... Listing 'pbsuite/honey/svm/ecoli_jul12.svm'... Listing 'pbsuite/jelly'... Compiling 'pbsuite/jelly/Assembly.py'... Compiling 'pbsuite/jelly/Collection.py'... Compiling 'pbsuite/jelly/Extraction.py'... Compiling 'pbsuite/jelly/GetSubs.py'... Compiling 'pbsuite/jelly/Jelly.py'... Compiling 'pbsuite/jelly/QFix.py'... Compiling 'pbsuite/jelly/Setup.py'... Compiling 'pbsuite/jelly/Stages.py'... Compiling 'pbsuite/jelly/Support.py'... Compiling 'pbsuite/jelly/__init__.py'... Compiling 'pbsuite/jelly/m4pie.py'... Listing 'pbsuite/utils'... Compiling 'pbsuite/utils/BamStat.py'... Compiling 'pbsuite/utils/BedIO.py'... Compiling 'pbsuite/utils/CommandRunner.py'... Compiling 'pbsuite/utils/FileHandlers.py'... Compiling 'pbsuite/utils/VCFIO.py'... Compiling 'pbsuite/utils/__init__.py'... Compiling 'pbsuite/utils/bamToFastq.py'... Compiling 'pbsuite/utils/blasrToBed.py'... Compiling 'pbsuite/utils/fakeQuals.py'... Compiling 'pbsuite/utils/fastqDivide.py'... Compiling 'pbsuite/utils/fastqSplit.py'... Compiling 'pbsuite/utils/jellyoutputrename.py'... Compiling 'pbsuite/utils/longCCSCombine.py'... Compiling 'pbsuite/utils/mapStats.py'... Compiling 'pbsuite/utils/mergeFaQu.py'... Compiling 'pbsuite/utils/quickN50.py'... Compiling 'pbsuite/utils/readSummary.py'... Compiling 'pbsuite/utils/setupLogging.py'... Compiling 'pbsuite/utils/summarizeAssembly.py'... Listing 'pbsuite/utils/vcfTemplates'... Compiling 'pbsuite/utils/vcfTemplates/spotToVCF.py'... make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_install -Xsam2bam -XsortChunks.sh make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_fixperms find debian/ -name Valid.py -exec chmod -x {} + make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbsuite-utils' in '../python3-pbsuite-utils_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4027388 and its subdirectories I: Current time: Tue Nov 26 00:13:36 -12 2024 I: pbuilder-time-stamp: 1732623216 Tue Nov 26 12:13:38 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Tue Nov 26 12:13:38 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Tue Nov 26 12:14:19 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Tue Nov 26 12:14:20 UTC 2024 I: pbsuite_15.8.24+dfsg-7_arm64.changes: Format: 1.8 Date: Mon, 08 Feb 2021 12:31:56 +0530 Source: pbsuite Binary: pbhoney pbjelly pbsuite python3-pbbanana python3-pbsuite-utils Architecture: all Version: 15.8.24+dfsg-7 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pbhoney - genomic structural variation discovery pbjelly - genome assembly upgrading tool pbsuite - software for Pacific Biosciences sequencing data python3-pbbanana - additional utilities for the pbsuite python3-pbsuite-utils - software for Pacific Biosciences sequencing data -- Python utilit Changes: pbsuite (15.8.24+dfsg-7) unstable; urgency=high . * Team Upload. * Add skip-not-installable restriction Checksums-Sha1: a5ba04d2e83f01b99dc9085226c3b5aa25225ae2 1057276 pbhoney_15.8.24+dfsg-7_all.deb 7dc1ffddeb534fe79bbbbfa32fc1d8caa2f2bbce 969140 pbjelly_15.8.24+dfsg-7_all.deb fa326f4d05e1d88778ba62c498e82a16d864ce24 5228 pbsuite_15.8.24+dfsg-7_all.deb 0e596b14d99ca785b89ba26ba6bd468e5357597a 6947 pbsuite_15.8.24+dfsg-7_arm64.buildinfo 8236eeb20ba2ca8a6ede1da7d1e80def52bdb769 19852 python3-pbbanana_15.8.24+dfsg-7_all.deb c24e6b0b5832abfc7901bb771ad3014a24611fa2 508472 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Checksums-Sha256: f1e25cd74a87a023ad7859ec7f64abcb49c41a69281471187dfc767f2a93ae35 1057276 pbhoney_15.8.24+dfsg-7_all.deb 4fd1d5fc298460a7ec79251ba0ad0df5b6a47083835bc4ed73fa6caf4fbd0de9 969140 pbjelly_15.8.24+dfsg-7_all.deb ac8a927aa3663277ca0df0023d9d29540257c55af470ec69596f27981cb59bcd 5228 pbsuite_15.8.24+dfsg-7_all.deb ce358a206e10771d2c3e0cb3a2f262dc0ab5b73a9dd9cc7a5eb95c45969b474f 6947 pbsuite_15.8.24+dfsg-7_arm64.buildinfo 6a4382ddf5bd340817de815c5b7b96075b4300d9e26f4a2fbe29a191f2eb5f75 19852 python3-pbbanana_15.8.24+dfsg-7_all.deb 066f1797ab8f7b05e9bf7d6362fdbeb80290c2fcfaaf82b104527c3b69a94c0a 508472 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Files: 9306e376114e345a8df9d60c1c614ac7 1057276 science optional pbhoney_15.8.24+dfsg-7_all.deb 52d13269da2c955beb5fe07603f0bd41 969140 science optional pbjelly_15.8.24+dfsg-7_all.deb a42be9cdc9f976bc35df895bc6b8ba01 5228 metapackages optional pbsuite_15.8.24+dfsg-7_all.deb e705587c264bb1a9fb0257759e8b9bd7 6947 science optional pbsuite_15.8.24+dfsg-7_arm64.buildinfo 54179a1997cd9024c679e1e506e073dd 19852 python optional python3-pbbanana_15.8.24+dfsg-7_all.deb 20dfb3c19d68b4be29d07947011beb69 508472 python optional python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Tue Nov 26 12:14:23 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_20-46583.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/pbsuite_15.8.24+dfsg-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/pbsuite_15.8.24+dfsg-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/pbsuite_15.8.24+dfsg-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/b1/pbsuite_15.8.24+dfsg-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.L8idnbSf/b2/pbsuite_15.8.24+dfsg-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.358s) 0.358s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 656ms CPU time consumed: 657ms Tue Nov 26 12:14:27 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 26 12:14:27 UTC 2024 I: pbsuite from trixie built successfully and reproducibly on arm64. Tue Nov 26 12:14:28 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 26 12:14:28 UTC 2024 I: Submitting 8.0K b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc Tue Nov 26 12:14:29 UTC 2024 I: Submitting 8.0K b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc Tue Nov 26 12:14:30 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 26 12:14:30 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 26 12:14:30 UTC 2024 I: Removing signed pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc files: removed './b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc' removed './b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc'