Fri May 17 15:49:12 UTC 2024 I: starting to build pbsim/trixie/arm64 on jenkins on '2024-05-17 15:48' Fri May 17 15:49:12 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/43358/console.log Fri May 17 15:49:12 UTC 2024 I: Downloading source for trixie/pbsim=1.0.3+git20180330.e014b1d+dfsg-3 --2024-05-17 15:49:12-- http://deb.debian.org/debian/pool/main/p/pbsim/pbsim_1.0.3%2bgit20180330.e014b1d%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2138 (2.1K) [text/prs.lines.tag] Saving to: ‘pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc’ 0K .. 100% 280M=0s 2024-05-17 15:49:12 (280 MB/s) - ‘pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc’ saved [2138/2138] Fri May 17 15:49:12 UTC 2024 I: pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbsim Binary: pbsim Architecture: any Version: 1.0.3+git20180330.e014b1d+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/pfaucon/PBSIM-PacBio-Simulator Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbsim Vcs-Git: https://salsa.debian.org/med-team/pbsim.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), asciidoctor Package-List: pbsim deb science optional arch=any Checksums-Sha1: 57c945ecc63de65e191c90197eeac530c95f428d 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz 4758b6129c5f1aaf9a1121b59fd4c6f59fc2d815 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz Checksums-Sha256: 043fef0df0c32c34407241a3dda095be3f6248bcc013f49bac160d289df872aa 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz cf0e59ee1818664aa9470d8ac4182b4eff94d01446a4a4e0a06520ad519ec7a0 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz Files: e2fd933c47e7ab290d65ed65d7b14499 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz aa63d72483ace74a1a29e0398919e69c 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmP+9x4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFlUA/9GqTXpicyAbaiaeXRlol5tctJUH7plZyL bZG9Bcii2tvXvMqc1SI58C7Bw6BjJm2R5A4tFFRizYVyb2TXUs3hNxq+2olQHtuX MI8OSWGJutTJ+U2ojmi0KwI8jKCydkylNksKbk98Uk2UdeNN/kJC3iv8ItBjJoUm oF9UORmfXI5aT5HOP7mNaeU169bLPe+RC42W3hmBHK9dxqMQOPTMfba5T7yCUyae O8eLUUJjXrz22EuuZA/DC3MPMMjy0pqaOdU3CN5Gg+Qbci5j9IYWLjx0xL0f0A8B MvSDu1ChsAZ6K1L9R3rADibJGW67nmFB9H4NvltThNKKyz7aGKVgxgOn8ItxQtz+ A4ZLkWHWz7OYuGOdHKjp5Es16p8EJ5uEQYROoX06fU6ZEwpZvb5zADGdRTdIbbt0 WnMqD/rA/ydldFOTAjW9voJdzpAjlKlLeAa9mrA4iqEnzpHxstzXhYzGrub9Mm55 1DShfXvhR55u1TGwmF9+/sUQ8tgI2LFlk7SOwuw2vynpK+KggF/j2g0XrQz1pQ9m L7mF+zyG9CVk+CXCVv/PdyQ8bW/lJqtnEJh+U/vP+TY9wkbpcmPGkaPDdKpJGDtw sb1PPpfrGWCjkbt2QhSlf1ALne9MPWGnrsPx1xRKN9nM32jLxxs0GUAbtOydrJ7W /6XRdnQgjSY= =Gwdn -----END PGP SIGNATURE----- Fri May 17 15:49:12 UTC 2024 I: Checking whether the package is not for us Fri May 17 15:49:12 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Fri May 17 15:49:12 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Fri May 17 15:49:51 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 19 10:12:15 -12 2025 I: pbuilder-time-stamp: 1750371135 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc] I: copying [./pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz] I: copying [./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Mar 1 06:56:30 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting pbsim in pbsim-1.0.3+git20180330.e014b1d+dfsg dpkg-source: info: unpacking pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2405003/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='37e8b0e6527a4278be658c525ca23782' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2405003' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/pbuilderrc_qaWQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/b1 --logfile b1/build.log pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 19 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2405003/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), asciidoctor dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libpipeline1{a} libruby{a} libruby3.1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato libarchive-cpio-perl libgpm2 libjs-jquery libltdl-dev libmail-sendmail-perl lynx wget zip 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 27.2 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 rubygems-integration all 1.18 [6704 B] Get: 14 http://deb.debian.org/debian trixie/main arm64 rake all 13.0.6-3 [83.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 ruby-sdbm arm64 1.0.0-5+b4 [14.6 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20230828-1+b1 [89.1 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2 [95.7 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libruby3.1t64 arm64 3.1.2-8.3 [5254 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 ruby3.1 arm64 3.1.2-8.3 [664 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libruby arm64 1:3.1+nmu1 [4664 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 ruby-rubygems all 3.4.20-1 [309 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 ruby arm64 1:3.1+nmu1 [5584 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 ruby-asciidoctor all 2.0.20-1 [212 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 asciidoctor all 2.0.20-1 [87.7 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 42 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Fetched 27.2 MB in 0s (136 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.2.1-3_arm64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../12-rubygems-integration_1.18_all.deb ... Unpacking rubygems-integration (1.18) ... Selecting previously unselected package rake. Preparing to unpack .../13-rake_13.0.6-3_all.deb ... Unpacking rake (13.0.6-3) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../14-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../15-ruby-webrick_1.8.1-1_all.deb ... Unpacking ruby-webrick (1.8.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../16-ruby-xmlrpc_0.3.2-2_all.deb ... Unpacking ruby-xmlrpc (0.3.2-2) ... Selecting previously unselected package ruby-sdbm:arm64. Preparing to unpack .../17-ruby-sdbm_1.0.0-5+b4_arm64.deb ... Unpacking ruby-sdbm:arm64 (1.0.0-5+b4) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../18-libbsd0_0.12.2-1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.2-1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../19-libedit2_3.1-20230828-1+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20230828-1+b1) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../20-libncurses6_6.5-2_arm64.deb ... Unpacking libncurses6:arm64 (6.5-2) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../21-libyaml-0-2_0.2.5-1+b1_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-1+b1) ... Selecting previously unselected package libruby3.1t64:arm64. Preparing to unpack .../22-libruby3.1t64_3.1.2-8.3_arm64.deb ... Unpacking libruby3.1t64:arm64 (3.1.2-8.3) ... Selecting previously unselected package ruby3.1. Preparing to unpack .../23-ruby3.1_3.1.2-8.3_arm64.deb ... Unpacking ruby3.1 (3.1.2-8.3) ... Selecting previously unselected package libruby:arm64. Preparing to unpack .../24-libruby_1%3a3.1+nmu1_arm64.deb ... Unpacking libruby:arm64 (1:3.1+nmu1) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../25-ruby-rubygems_3.4.20-1_all.deb ... Unpacking ruby-rubygems (3.4.20-1) ... Selecting previously unselected package ruby. Preparing to unpack .../26-ruby_1%3a3.1+nmu1_arm64.deb ... Unpacking ruby (1:3.1+nmu1) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../27-ruby-asciidoctor_2.0.20-1_all.deb ... Unpacking ruby-asciidoctor (2.0.20-1) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../28-asciidoctor_2.0.20-1_all.deb ... Unpacking asciidoctor (2.0.20-1) ... Selecting previously unselected package m4. Preparing to unpack .../29-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../30-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../31-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../32-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../33-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../38-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... 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Selecting previously unselected package intltool-debian. Preparing to unpack .../46-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../47-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../48-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libncurses6:arm64 (6.5-2) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up openssl (3.2.1-3) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libedit2:arm64 (3.1-20230828-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up rake (13.0.6-3) ... Setting up ruby-sdbm:arm64 (1.0.0-5+b4) ... Setting up ruby-rubygems (3.4.20-1) ... Setting up libruby3.1t64:arm64 (3.1.2-8.3) ... Setting up ruby3.1 (3.1.2-8.3) ... Setting up libruby:arm64 (1:3.1+nmu1) ... Setting up ruby (1:3.1+nmu1) ... Setting up ruby-asciidoctor (2.0.20-1) ... Setting up asciidoctor (2.0.20-1) ... Processing triggers for libc-bin (2.38-10) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_source.changes dpkg-buildpackage: info: source package pbsim dpkg-buildpackage: info: source version 1.0.3+git20180330.e014b1d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' rm -f debian/pbsim.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:17: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:17: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:17: the top level configure.ac:21: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:21: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:21: the top level configure.ac:12: installing './compile' configure.ac:24: installing './config.guess' configure.ac:24: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for floor... no checking for gettimeofday... yes checking for memset... yes checking for pow... no checking for sqrt... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o helpers.o helpers.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o output.o output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o pbsim.o pbsim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o pbsim helpers.o output.o pbsim.o make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making check in src make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_auto_install -- make -j12 install DESTDIR=/build/reproducible-path/pbsim-1.0.3\+git20180330.e014b1d\+dfsg/debian/pbsim AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making install in src make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[4]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/debian/pbsim/usr/bin' /usr/bin/install -c pbsim '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/debian/pbsim/usr/bin' make[4]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[4]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' mkdir -p debian/pbsim/usr/share/pbsim/models cp -p data/* debian/pbsim/usr/share/pbsim/models make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' mkdir -p debian/pbsim/usr/share/doc/pbsim/ cp README debian/pbsim/usr/share/doc/pbsim dh_installdocs -- make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' asciidoctor -a docdate='' -b manpage debian/pbsim.1.adoc dh_installman -- make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbsim-dbgsym' in '../pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb'. dpkg-deb: building package 'pbsim' in '../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2405003 and its subdirectories I: Current time: Thu Jun 19 10:12:49 -12 2025 I: pbuilder-time-stamp: 1750371169 Fri May 17 15:49:51 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri May 17 15:49:51 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri May 17 15:50:38 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri May 17 15:50:39 UTC 2024 I: pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes: Format: 1.8 Date: Wed, 01 Mar 2023 07:45:44 +0100 Source: pbsim Binary: pbsim pbsim-dbgsym Architecture: arm64 Version: 1.0.3+git20180330.e014b1d+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pbsim - simulator for PacBio sequencing reads Changes: pbsim (1.0.3+git20180330.e014b1d+dfsg-3) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Update renamed lintian tag names in lintian overrides. * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: 90f1c304b038d7d34e0613e07b4bca478ae2ee84 44784 pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb 9e383950c9d0701e86695bfe2d7ac8d4f832c89a 5765 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo ca420087d9a9da0b008e4c1e63de0ffebc203411 24680 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb Checksums-Sha256: 1ac87797cf8ebef67d67f9df774973912465b4bbb4ef0c0bd1ce7e944eb534e9 44784 pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb 250abeed41ed026187c7153dd6b82e0547c97ed3ea473779567410d76f7cc18a 5765 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo fc679cbd7d5a0627587a5f21da35e6037e4326dd90b5d18cdb8b112e6861b333 24680 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb Files: 088de77f84ff8164135953bd0f71663b 44784 debug optional pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb 2686cb6c21a997196d96995cefee4acb 5765 science optional pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo 12894d37c17fba49b49cbcbce60c558a 24680 science optional pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.deb Fri May 17 15:50:40 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_15-43358.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IIQ7IAvh/b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.358s) 0.358s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 692ms CPU time consumed: 691ms Fri May 17 15:50:41 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Fri May 17 15:50:41 UTC 2024 I: pbsim from trixie built successfully and reproducibly on arm64. Fri May 17 15:50:43 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 17 15:50:43 UTC 2024 I: Submitting 8.0K b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc Fri May 17 15:50:43 UTC 2024 I: Submitting 8.0K b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc Fri May 17 15:50:44 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 17 15:50:44 UTC 2024 I: Done submitting .buildinfo files. Fri May 17 15:50:44 UTC 2024 I: Removing signed pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc files: removed './b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc' removed './b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_arm64.buildinfo.asc'