Fri Apr 26 05:16:58 UTC 2024 I: starting to build parsnp/trixie/arm64 on jenkins on '2024-04-26 05:16' Fri Apr 26 05:16:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/15229/console.log Fri Apr 26 05:16:58 UTC 2024 I: Downloading source for trixie/parsnp=2.0.5+dfsg-1 --2024-04-26 05:16:58-- http://deb.debian.org/debian/pool/main/p/parsnp/parsnp_2.0.5%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2245 (2.2K) [text/prs.lines.tag] Saving to: ‘parsnp_2.0.5+dfsg-1.dsc’ 0K .. 100% 246M=0s 2024-04-26 05:16:58 (246 MB/s) - ‘parsnp_2.0.5+dfsg-1.dsc’ saved [2245/2245] Fri Apr 26 05:16:58 UTC 2024 I: parsnp_2.0.5+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parsnp Binary: parsnp Architecture: any Version: 2.0.5+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/parsnp Vcs-Git: https://salsa.debian.org/med-team/parsnp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, libmuscle-dev Package-List: parsnp deb science optional arch=any Checksums-Sha1: f4ceb342621e5c6bd057be6e22fc6ae83c8f7bda 142284 parsnp_2.0.5+dfsg.orig.tar.xz 818824090b3338f103848a3b916df8903f6c2668 10064 parsnp_2.0.5+dfsg-1.debian.tar.xz Checksums-Sha256: 928433c5dc9fa2533833c67f1b111153cd2509a68580c96c3c60c563b2eb4562 142284 parsnp_2.0.5+dfsg.orig.tar.xz 422ef2f0130e9cc6866cfd43c3f826d7b8f9e38deeafbca366c55ec23a15e703 10064 parsnp_2.0.5+dfsg-1.debian.tar.xz Files: 86e97ec68492008ce70a336020dc5b37 142284 parsnp_2.0.5+dfsg.orig.tar.xz d8dd0e67c5d6b7c750bf45dcbdc561b8 10064 parsnp_2.0.5+dfsg-1.debian.tar.xz Dgit: a1b93821012b8a7189a7c35487bd752deb8a895c debian archive/debian/2.0.5+dfsg-1 https://git.dgit.debian.org/parsnp -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmYo4aIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrOoRAAhILun80JH7o5Q70vwDdyDHt113Eq fwo8104tXBgBhOMVBnXggQ1LRJsROrcxSavRVhWTIbVq7UqEqfm94XwyWh9ZY3nW YejXATmFhUZzgnBTc8KPn0udsHIvRqhiXf3wd9DUCADCmNGFqNn1zc4T7vigo5hu vKU8V59RtRmV0MrDFDzNBEs5YhqzlUjuxkXIfM2U6UvnExzMCLPAUI10LiuXWKBx PidlhO6fUo+x80C3w/exnRcxZHNd4iTa6+uazCK6RKZoCXlsIhn0S3+OGHXWZY8M BvYJonfjy3JNgl/EVmP+9t4hsiErS1qr7AoGXyr+zMiHSuwxisnt7d58wrDv3i5G XjnK9TlP7ARwISUT3pjePp4DMj3io9+R+hyUheaerSxljJ0SzuecmzctHcJI+ewr 6DE/ZVU5Jh+wtJeIY4NyopbMj5BVq/lxzgXUlnWdBo8/LLkhi2+2F/I02P4j4x8j cI6DaCEkgrlXdPY+jNekPS7KnCnBY5dwSV3TBp8T1R8V+5xHATcmPwROudHSC3zi 8sHk27PYZ+eANlEy6iGVr3JOdSfOIVTw0Wpn+PNWQEZj/vPGfsIwxk6oEIiNwmbR edSO9s2X+UD77k23Rln9I0xJwvnmnU5FS2yHcjoE8o52QEFgoplGm46FLoxDaudW Dfl97nNQRGK2pZo= =cxoh -----END PGP SIGNATURE----- Fri Apr 26 05:16:58 UTC 2024 I: Checking whether the package is not for us Fri Apr 26 05:16:58 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Apr 26 05:16:58 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Apr 26 05:18:19 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 25 17:17:01 -12 2024 I: pbuilder-time-stamp: 1714108621 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parsnp_2.0.5+dfsg-1.dsc] I: copying [./parsnp_2.0.5+dfsg.orig.tar.xz] I: copying [./parsnp_2.0.5+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Apr 24 10:40:34 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parsnp_2.0.5+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting parsnp in parsnp-2.0.5+dfsg dpkg-source: info: unpacking parsnp_2.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking parsnp_2.0.5+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_missing_interpreter_line.patch dpkg-source: info: applying proper_calls_to_tools.patch dpkg-source: info: applying drop_m64.patch dpkg-source: info: applying fix_build_with_as-needed.patch dpkg-source: info: applying non-versioned-libs.patch dpkg-source: info: applying blhc-fix.patch dpkg-source: info: applying py3-parsnp-libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2242389/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='33b0e648df5b45d685fb8db1c40d1504' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2242389' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/pbuilderrc_jaki --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/b1 --logfile b1/build.log parsnp_2.0.5+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2242389/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, libmuscle-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19938 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libmuscle-dev; however: Package libmuscle-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmuscle-dev{a} libmuscle1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 49.9 MB of archives. After unpacking 222 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.11-minimal arm64 3.11.8-1 [811 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.11-minimal arm64 3.11.8-1 [1848 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1781 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 python3.11 arm64 3.11.8-1 [597 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.11.6-1 [9224 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.11.6-1 [26.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.2-1 [800 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.2-1 [1983 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.10+dfsg-5 [3120 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-distutils all 3.11.5-1 [131 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20240422 [107 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libmuscle1 arm64 3.7+4565-7 [232 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libmuscle-dev arm64 3.7+4565-7 [293 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libpython3.11 arm64 3.11.8-1 [1844 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3+b1 [916 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libpython3.11-dev arm64 3.11.8-1 [4289 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.11.6-1 [9460 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.2-1 [1872 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libpython3.12 arm64 3.12.2-1 [1961 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.2-1 [4639 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.11.6-1 [1072 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.2-1 [653 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.11.6-1 [1060 B] Get: 68 http://deb.debian.org/debian trixie/main arm64 python3.11-dev arm64 3.11.8-1 [509 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.11.6-1 [26.1 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.2-1 [507 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.11.6-1 [1076 B] Fetched 49.9 MB in 1s (84.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19938 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_arm64.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20254 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.6-1_arm64.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-1_arm64.deb ... Unpacking python3.11 (3.11.8-1) ... 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Setting up libpython3.12-minimal:arm64 (3.12.2-1) ... Setting up libmagic1:arm64 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Apr 26 05:17:36 UTC 2024. Universal Time is now: Fri Apr 26 05:17:36 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up libmuscle-dev (3.7+4565-7) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 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Setting up libpython3.12:arm64 (3.12.2-1) ... Setting up libpython3-stdlib:arm64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libpython3.11:arm64 (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up libpython3.12-dev:arm64 (3.12.2-1) ... Setting up libpython3.11-dev:arm64 (3.11.8-1) ... Setting up python3.12-dev (3.12.2-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libpython3-dev:arm64 (3.11.6-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.8-1) ... Setting up python3-all (3.11.6-1) ... Setting up libpython3-all-dev:arm64 (3.11.6-1) ... Setting up python3-dev (3.11.6-1) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.6-1) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/parsnp-2.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parsnp_2.0.5+dfsg-1_source.changes dpkg-buildpackage: info: source package parsnp dpkg-buildpackage: info: source version 2.0.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:23: warning: AC_OUTPUT should be used without arguments. configure.ac:23: You should run autoupdate. configure.ac:3: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory, src/Makefile.am:4: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for libMUSCLE/muscle.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' Making all in src make[2]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp parsnp.cpp: In member function 'void Aligner::writeOutput(std::string, std::vector&)': parsnp.cpp:955:28: warning: '%d' directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=] 955 | sprintf(b,"%d",(int)z+1);// C-style string formed without null | ^~ parsnp.cpp:955:27: note: directive argument in the range [-2147483647, 2147483647] 955 | sprintf(b,"%d",(int)z+1);// C-style string formed without null | ^~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4109, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from parsnp.hh:14, from parsnp.cpp:54: In function 'int sprintf(char*, const char*, ...)', inlined from 'void Aligner::writeOutput(std::string, std::vector&)' at parsnp.cpp:955:24: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/parsnp-2.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o parsnp_core parsnp_core-MuscleInterface.o parsnp_core-parsnp.o parsnp_core-LCB.o parsnp_core-LCR.o parsnp_core-TMum.o parsnp_core-Converter.o parsnp_core-iniFile.o -fopenmp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE make[2]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[2]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[1]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' Making check in src make[2]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[2]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[1]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/parsnp/ make -j12 install DESTDIR=/build/reproducible-path/parsnp-2.0.5\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[3]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/parsnp-2.0.5+dfsg/debian/parsnp../bin' /usr/bin/install -c parsnp_core '/build/reproducible-path/parsnp-2.0.5+dfsg/debian/parsnp../bin' make[3]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg/src' make[2]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[3]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[2]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' make[1]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/parsnp-2.0.5+dfsg' dh_fixperms chmod -x debian/parsnp/usr/share/parsnp/template.ini make[1]: Leaving directory '/build/reproducible-path/parsnp-2.0.5+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'parsnp' in '../parsnp_2.0.5+dfsg-1_arm64.deb'. dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_2.0.5+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../parsnp_2.0.5+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../parsnp_2.0.5+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2242389 and its subdirectories I: Current time: Thu Apr 25 17:18:18 -12 2024 I: pbuilder-time-stamp: 1714108698 Fri Apr 26 05:18:20 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Fri Apr 26 05:18:20 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Fri Apr 26 05:19:30 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Fri Apr 26 05:19:31 UTC 2024 I: parsnp_2.0.5+dfsg-1_arm64.changes: Format: 1.8 Date: Wed, 24 Apr 2024 12:37:21 +0200 Source: parsnp Binary: parsnp parsnp-dbgsym Architecture: arm64 Version: 2.0.5+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: parsnp - rapid core genome multi-alignment Changes: parsnp (2.0.5+dfsg-1) unstable; urgency=medium . * New upstream version 2.0.5+dfsg * d/control: declare compliance to standards version 4.7.0. * proper_calls_to_tools.patch: unfuzz. * py3-parsnp-libs.patch: unfuzz. Checksums-Sha1: a0b4fdea1da6e6313c331ed3bc1810a072d36016 1163736 parsnp-dbgsym_2.0.5+dfsg-1_arm64.deb 4a196d7fec2ecf8ef698659aa1bf97c5cc3a81a2 6745 parsnp_2.0.5+dfsg-1_arm64.buildinfo 7a3a28620bc015f5984325b4e34bc33cd33bac05 195792 parsnp_2.0.5+dfsg-1_arm64.deb Checksums-Sha256: 836ef7ca775ae4f406ce28dd9f044e5b0b178e7347331937dc1215b2f4fe542d 1163736 parsnp-dbgsym_2.0.5+dfsg-1_arm64.deb 372ea303693c3853917daaba2f46f9698e02ab8183e717fd6ed9fe679db848c0 6745 parsnp_2.0.5+dfsg-1_arm64.buildinfo 6aec1ba60b65596af2da6a54f365e850ccc7ea43a108176e3e98bda87e61f53f 195792 parsnp_2.0.5+dfsg-1_arm64.deb Files: 82edc9f7e0c16dfd3bf3bf7be0615460 1163736 debug optional parsnp-dbgsym_2.0.5+dfsg-1_arm64.deb 1ac6235abbb04ff8a9124b3d9bfd3486 6745 science optional parsnp_2.0.5+dfsg-1_arm64.buildinfo 6bdfbc6a935c5ccf87f9927d6cbdff6e 195792 science optional parsnp_2.0.5+dfsg-1_arm64.deb Fri Apr 26 05:19:32 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-15229.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/parsnp_2.0.5+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/parsnp_2.0.5+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/parsnp_2.0.5+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/b1/parsnp_2.0.5+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.pwjKHnMp/b2/parsnp_2.0.5+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.357s) 0.357s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 688ms CPU time consumed: 681ms Fri Apr 26 05:19:33 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 26 05:19:33 UTC 2024 I: parsnp from trixie built successfully and reproducibly on arm64. Fri Apr 26 05:19:35 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Apr 26 05:19:35 UTC 2024 I: Submitting 8.0K b1/parsnp_2.0.5+dfsg-1_arm64.buildinfo.asc Fri Apr 26 05:19:39 UTC 2024 I: Submitting 8.0K b2/parsnp_2.0.5+dfsg-1_arm64.buildinfo.asc Fri Apr 26 05:19:41 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 26 05:19:41 UTC 2024 I: Done submitting .buildinfo files. Fri Apr 26 05:19:41 UTC 2024 I: Removing signed parsnp_2.0.5+dfsg-1_arm64.buildinfo.asc files: removed './b1/parsnp_2.0.5+dfsg-1_arm64.buildinfo.asc' removed './b2/parsnp_2.0.5+dfsg-1_arm64.buildinfo.asc'