Tue Nov 12 23:00:51 UTC 2024 I: starting to build parasail/trixie/arm64 on jenkins on '2024-11-12 23:00' Tue Nov 12 23:00:51 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/45452/console.log Tue Nov 12 23:00:51 UTC 2024 I: Downloading source for trixie/parasail=2.6.2+dfsg-2 --2024-11-12 23:00:52-- http://deb.debian.org/debian/pool/main/p/parasail/parasail_2.6.2%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2358 (2.3K) [text/prs.lines.tag] Saving to: ‘parasail_2.6.2+dfsg-2.dsc’ 0K .. 100% 288M=0s 2024-11-12 23:00:52 (288 MB/s) - ‘parasail_2.6.2+dfsg-2.dsc’ saved [2358/2358] Tue Nov 12 23:00:52 UTC 2024 I: parasail_2.6.2+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parasail Binary: libparasail-dev, libparasail8, parasail Architecture: any Version: 2.6.2+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Étienne Mollier Homepage: https://github.com/jeffdaily/parasail Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/parasail Vcs-Git: https://salsa.debian.org/med-team/parasail.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev Package-List: libparasail-dev deb libdevel optional arch=any libparasail8 deb libs optional arch=any parasail deb science optional arch=any Checksums-Sha1: 5630897fe1324df197787af36bb2347de4243aca 1145232 parasail_2.6.2+dfsg.orig.tar.xz 58e974ccce8097910c314374e545479b1d2c4e44 50920 parasail_2.6.2+dfsg-2.debian.tar.xz Checksums-Sha256: 6d522d5d3a465ea5ad90fcd585f2223168992c8bbc0a5d0fab0878d16abaf83a 1145232 parasail_2.6.2+dfsg.orig.tar.xz 9c4ce5babe36d6f63bf9d5d34806175fd80a4624c062296cb18dc60ae5a9a679 50920 parasail_2.6.2+dfsg-2.debian.tar.xz Files: 556f8816581efe9da9f4f34cd1ce5fbc 1145232 parasail_2.6.2+dfsg.orig.tar.xz b3af2d92a8f1908e938211d329c00c94 50920 parasail_2.6.2+dfsg-2.debian.tar.xz Dgit: e6e8ee698781710dc03ec24e09cbe1eac6133a5c debian archive/debian/2.6.2+dfsg-2 https://git.dgit.debian.org/parasail -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAma+/IsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdodEg/9EBewJ8F4OLerVcwx6IC4IbkS74Kz PYGbz3qsZPqfQhq8Iv4RAGvlFtur/GJbTj/JOlayV8XlfpCzKscmd+Vv7CP98JV0 wQ/Djn9VQpUh1jKvTgswzlhC1KQa4BRh3M9IgD+4PvmWXFF/r9VVURWi1MX7Jkvy kRjgJ7pHsbHXFYu16t31w0uBe6cV1acosHhE0T46pNnHSJcuJvB4iK3WpgDZJqqI O+DBs2qFEW9LylrvAVIPmARTDplNOKxz6WDBYkOwS2QUyIleCet2PiRTzWvECDs7 C9cLaCx28vek1vfeW5QiyRtVhXtm0PFxm4HhDUcHYGWjEArpzhpZPDRS+631AKkZ 1/d71IfazIdBG3TUwlPUY5Ey91Jzz83qcO6bigGYa65V0vA9w6S5oQj0C28GKXfo GgxhRuqoT3rGvwSzy3aGXGTCck/WmVp947SApNljVg3CPLLjzsjZ1CtfhU55sWmC keijpbduAXYXsHNH/EWl0LbaosDHlwOFPwAvl2uCo1vNAmq1vD8u8CwB6yuL5p5n 1O5ArjZaM/hGv65711hvdo4HVJ8z+P2/9JOIHvU4OgqnDxrfc8qA3fKtUfb5fAv4 5n0l50HSfsCc+WTDtYMKx6a4wRQmEdpjuZBKyrjFYwO9Zmq3n0xTFssZprpnwoEN WMA3iuH1CCqFanY= =znf1 -----END PGP SIGNATURE----- Tue Nov 12 23:00:52 UTC 2024 I: Checking whether the package is not for us Tue Nov 12 23:00:52 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Tue Nov 12 23:00:52 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Tue Nov 12 23:12:10 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 15 17:23:55 -12 2025 I: pbuilder-time-stamp: 1765862635 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parasail_2.6.2+dfsg-2.dsc] I: copying [./parasail_2.6.2+dfsg.orig.tar.xz] I: copying [./parasail_2.6.2+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 07:15:23 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parasail_2.6.2+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting parasail in parasail-2.6.2+dfsg dpkg-source: info: unpacking parasail_2.6.2+dfsg.orig.tar.xz dpkg-source: info: unpacking parasail_2.6.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-system-libs.patch dpkg-source: info: applying nonx86 dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2461656/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f07699e5fedc4d7eaa8bce0998aae1c5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2461656' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/pbuilderrc_4wDf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/b1 --logfile b1/build.log parasail_2.6.2+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2461656/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 37.1 MB of archives. After unpacking 148 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.107 [11.0 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 36 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b5 [308 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.6-2+b1 [437 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2+b1 [437 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.6-2+b1 [1398 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1+b1 [85.2 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.11.0-1 [459 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Fetched 37.1 MB in 0s (111 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. 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Unpacking libnghttp3-9:arm64 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../50-libngtcp2-16_1.6.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../51-libngtcp2-crypto-gnutls8_1.6.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../52-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../53-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../54-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... 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Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:arm64 (1.22.0-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up libgnutls-dane0t64:arm64 (3.8.6-2+b1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Setting up libssl-dev:arm64 (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.107) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libnghttp3-dev:arm64 (1.4.0-1+b1) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-2+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.6.0-1) ... Setting up libngtcp2-dev:arm64 (1.6.0-1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:arm64 (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libgnutls28-dev:arm64 (3.8.6-2+b1) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:arm64 (1.21.3-3) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-3) ... Setting up libkdb5-10t64:arm64 (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up krb5-multidev:arm64 (1.21.3-3) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.0-1) ... Setting up libhts-dev:arm64 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/parasail-2.6.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parasail_2.6.2+dfsg-2_source.changes dpkg-buildpackage: info: source package parasail dpkg-buildpackage: info: source version 2.6.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:13: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:13: the top level configure.ac:109: warning: The macro 'AC_PROG_CC_C99' is obsolete. configure.ac:109: You should run autoupdate. ./lib/autoconf/c.m4:1662: AC_PROG_CC_C99 is expanded from... configure.ac:109: the top level configure.ac:109: installing 'build-aux/compile' configure.ac:78: installing 'build-aux/config.guess' configure.ac:78: installing 'build-aux/config.sub' configure.ac:70: installing 'build-aux/install-sh' configure.ac:70: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' blhc: ignore-line-regexp: C(C|XX) : \.+ .* dh_auto_configure -- --disable-neon \ --enable-shared \ --disable-static ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-neon --enable-shared --disable-static checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu configure: configure: C compiler configure: checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 14.2.0 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking for poll.h... yes checking for unistd.h... (cached) yes checking for windows.h... no checking for sys/mman.h... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for C/C++ restrict keyword... __restrict__ checking size of int... 4 checking for struct __stat64... no checking for gcc option to enable large file support... none needed checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for size_t... yes checking for OpenMP flag of C compiler... -fopenmp checking for __builtin_cpu_init... no checking for __builtin_cpu_supports... no checking for SSE2 support... no checking for SSE2 _mm_set1_epi64x... no checking for SSE2 _mm_set_epi64x... no checking for SSE4.1 support... no checking for SSE4.1 _mm_insert_epi64... no checking for SSE4.1 _mm_extract_epi64... no checking for AVX2 support... no checking for AVX2 _mm256_set1_epi64x... no checking for AVX2 _mm256_set_epi64x... no checking for AVX2 _mm256_insert_epi64... no checking for AVX2 _mm256_insert_epi32... no checking for AVX2 _mm256_insert_epi16... no checking for AVX2 _mm256_insert_epi8... no checking for AVX2 _mm256_extract_epi64... no checking for AVX2 _mm256_extract_epi32... no checking for AVX2 _mm256_extract_epi16... no checking for AVX2 _mm256_extract_epi8... no checking for AVX512F support... no checking for AVX512BW support... no checking for AVX512VBMI support... no checking for xgetbv... no checking for AltiVec support... no checking for _aligned_malloc... no checking for aligned_alloc... yes checking for filelength... no checking for memalign... yes checking for memset... yes checking for poll... yes checking for posix_memalign... yes checking for getopt... yes checking for SetUnhandledExceptionFilter... no checking for _fstat64... no checking for _stat64... no checking for int64_t literal suffix... unknown checking for GetSystemTimeAsFileTime... no checking for clock_get_time... no checking for library containing clock_gettime... none required checking for clock_gettime CLOCK_MONOTONIC... no checking for clock_gettime CLOCK_REALTIME... no checking for library containing sqrt... -lm checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for grep that handles long lines and -e... /usr/bin/grep checking whether C compiler supports visibility flag... -fvisibility=hidden configure: configure: C++ compiler configure: checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for C++ compiler vendor... gnu checking for C++ compiler version... 14.2.0 checking for OpenMP flag of C++ compiler... -fopenmp checking for variadic macros... yes configure: configure: Libtool setup configure: checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking our pkgconfig libname... parasail-1 checking our pkgconfig version... 2.6.2 checking our pkgconfig_libdir... ${libdir}/pkgconfig expanded our pkgconfig_libdir... /usr/lib/aarch64-linux-gnu/pkgconfig checking our pkgconfig_libfile... parasail-1.pc checking our package / suffix... Pairwise Sequence Alignment Library / checking our pkgconfig description... Pairwise Sequence Alignment Library checking our pkgconfig requires... checking our pkgconfig ext libs... -lparasail checking our pkgconfig cppflags... checking our pkgconfig ldflags... noninstalled pkgconfig -L /build/reproducible-path/parasail-2.6.2+dfsg/src/.libs noninstalled pkgconfig -I /build/reproducible-path/parasail-2.6.2+dfsg/. checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing parasail-1.pc commands config.status: creating parasail-1.pc.in config.status: creating parasail-1.pc config.status: creating parasail-1-uninstalled.pc config.status: creating parasail-1-uninstalled.sh -=-=-=-=-=-=-=-=-=-= Configuration Complete =-=-=-=-=-=-=-=-=-=-=- Configuration summary : parasail version : .................... 2.6.2 Host CPU : ............................ aarch64 Host Vendor : ......................... unknown Host OS : ............................. linux-gnu Toolchain : CC : .................................. gcc (gnu, 14.2.0) CXX : ................................. g++ (gnu, 14.2.0) Flags : CFLAGS : .............................. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic CXXFLAGS : ............................ -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard CPPFLAGS : ............................ -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS : ............................. -Wl,-z,relro -Wl,-z,now LIBS : ................................ Intrinsics : SSE2 : ................................ auto (no) SSE2_CFLAGS : ......................... not supported SSE4.1 : .............................. auto (no) SSE41_CFLAGS : ........................ not supported AVX2 : ................................ auto (no) AVX2_CFLAGS : ......................... not supported AVX512 : .............................. auto (no) AVX512F_CFLAGS : ...................... not supported AVX512BW_CFLAGS : ..................... not supported AVX512VBMI_CFLAGS : ................... not supported Altivec : ............................. auto (no) ALTIVEC_CFLAGS : ...................... not supported ARM NEON : ............................ no NEON_CFLAGS : ......................... EXTRA_NEON_CFLAGS : ................... Dependencies : OPENMP_CFLAGS : ....................... -fopenmp OPENMP_CXXFLAGS : ..................... -fopenmp CLOCK_LIBS : .......................... MATH_LIBS : ........................... -lm Z_CFLAGS : ............................ Z_LIBS : .............................. -lz Installation directories : Program directory : ................... /usr/bin Library directory : ................... /usr/lib/aarch64-linux-gnu Include directory : ................... /usr/include Pkgconfig directory : ................. /usr/lib/aarch64-linux-gnu/pkgconfig Compiling some other packages against parasail may require the addition of '/usr/lib/aarch64-linux-gnu/pkgconfig' to the PKG_CONFIG_PATH environment variable. make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-cpuid.lo `test -f 'src/cpuid.c' || echo './'`src/cpuid.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c /bin/bash 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/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats_scan.lo `test -f 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats_scan.lo `test 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src/.libs/libparasail_novec_table_la-sw_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_banded.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_scan.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o contrib/sais-lite-lcp/sais.lo contrib/sais-lite-lcp/sais.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec.la src/libparasail_novec_la-nw.lo src/libparasail_novec_la-sg.lo src/libparasail_novec_la-sw.lo src/libparasail_novec_la-nw_scan.lo src/libparasail_novec_la-sg_scan.lo src/libparasail_novec_la-sw_scan.lo src/libparasail_novec_la-nw_banded.lo src/libparasail_novec_la-nw_stats.lo src/libparasail_novec_la-sg_stats.lo src/libparasail_novec_la-sw_stats.lo src/libparasail_novec_la-nw_stats_scan.lo src/libparasail_novec_la-sg_stats_scan.lo src/libparasail_novec_la-sw_stats_scan.lo src/libparasail_novec_la-nw_trace.lo src/libparasail_novec_la-sg_trace.lo src/libparasail_novec_la-sw_trace.lo src/libparasail_novec_la-nw_trace_scan.lo src/libparasail_novec_la-sg_trace_scan.lo src/libparasail_novec_la-sw_trace_scan.lo libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c contrib/sais-lite-lcp/sais.c -fPIC -DPIC -o contrib/sais-lite-lcp/.libs/sais.o /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo libtool: link: ar cr .libs/libparasail_novec_table.a src/.libs/libparasail_novec_table_la-nw.o src/.libs/libparasail_novec_table_la-sg.o src/.libs/libparasail_novec_table_la-sw.o src/.libs/libparasail_novec_table_la-nw_scan.o src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_table.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" ) libtool: link: ar cr .libs/libparasail_novec.a src/.libs/libparasail_novec_la-nw.o src/.libs/libparasail_novec_la-sg.o src/.libs/libparasail_novec_la-sw.o src/.libs/libparasail_novec_la-nw_scan.o src/.libs/libparasail_novec_la-sg_scan.o src/.libs/libparasail_novec_la-sw_scan.o src/.libs/libparasail_novec_la-nw_banded.o src/.libs/libparasail_novec_la-nw_stats.o src/.libs/libparasail_novec_la-sg_stats.o src/.libs/libparasail_novec_la-sw_stats.o src/.libs/libparasail_novec_la-nw_stats_scan.o src/.libs/libparasail_novec_la-sg_stats_scan.o src/.libs/libparasail_novec_la-sw_stats_scan.o src/.libs/libparasail_novec_la-nw_trace.o src/.libs/libparasail_novec_la-sg_trace.o src/.libs/libparasail_novec_la-sw_trace.o src/.libs/libparasail_novec_la-nw_trace_scan.o src/.libs/libparasail_novec_la-sg_trace_scan.o src/.libs/libparasail_novec_la-sw_trace_scan.o libtool: link: ranlib .libs/libparasail_novec.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec.la" && ln -s "../libparasail_novec.la" "libparasail_novec.la" ) libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o libtool: link: ranlib .libs/libparasail_novec_rowcol.a libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/libsais.la contrib/sais-lite-lcp/sais.lo libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o libtool: link: ranlib tests/.libs/libsais.a libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -version-info 9:2:1 -Wl,-z,relro -Wl,-z,now -o libparasail.la -rpath /usr/lib/aarch64-linux-gnu src/libparasail_la-cigar.lo src/libparasail_la-cpuid.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-sg_qb_db_dispatch.lo src/libparasail_la-sg_qe_de_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-sg_qb_db_dispatch.o src/.libs/libparasail_la-sg_qe_de_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libparasail.so.8 -o .libs/libparasail.so.8.1.2 libtool: link: (cd ".libs" && rm -f "libparasail.so.8" && ln -s "libparasail.so.8.1.2" "libparasail.so.8") libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.8.1.2" "libparasail.so") libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z,relro -Wl,-z,now -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o apps/parasail_stats apps/parasail_stats.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_auto_test make -j12 test "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make tests/traceback tests/test_align tests/test_basic tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_pssm tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/test_p59 tests/libsais.la make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: 'tests/libsais.la' is up to date. gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/traceback.o tests/traceback.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_align.o tests/test_align.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_basic.o tests/test_basic.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_gcups.o tests/test_gcups.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_io.o tests/test_io.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_isa.o tests/test_isa.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_matrix.o tests/test_matrix.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_pssm.o tests/test_pssm.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_query-test_query.o `test -f 'tests/test_query.c' || echo './'`tests/test_query.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_sw_dispatch.o tests/test_sw_dispatch.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_12.o tests/test_12.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_64.o tests/test_64.c gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c tests/test_verify.c: In function 'main': gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -c -o tests/test_p59.o tests/test_p59.c tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 310 | int do_neon = 1; | ^~~~~~~ tests/test_verify.c:309:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 309 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify.c:308:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 308 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify.c:307:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 307 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify.c:306:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 306 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_tables.c: In function 'main': /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_basic tests/test_basic.o libparasail.la tests/test_verify_tables.c:328:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 328 | int do_neon = 1; | ^~~~~~~ tests/test_verify_tables.c:327:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 327 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_tables.c:326:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 326 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_tables.c:325:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 325 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 324 | int do_sse2 = 1; | ^~~~~~~ tests/test_verify_traces.c: In function 'main': tests/test_verify_traces.c:239:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 239 | int do_neon = 1; | ^~~~~~~ tests/test_verify_traces.c:238:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 238 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_traces.c:237:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 237 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_traces.c:236:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 236 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 235 | int do_sse2 = 1; | ^~~~~~~ In file included from tests/test_p59.c:33: tests/test_p59.h: In function 'main': tests/test_p59.h:513:1: warning: string length '51025' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 513 | "GAAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ tests/test_p59.h:1026:1: warning: string length '51024' is greater than the length '4095' ISO C99 compilers are required to support [-Woverlength-strings] 1026 | "AAAGTGACAGGGAGAATGGAACCA"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_gcups tests/test_gcups.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_io tests/test_io.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_isa tests/test_isa.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_matrix tests/test_matrix.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_pssm tests/test_pssm.o libparasail.la tests/test_verify_cigars.c: In function 'main': /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_query tests/test_query-test_query.o libparasail.la tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable] 311 | int do_neon = 1; | ^~~~~~~ tests/test_verify_cigars.c:310:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable] 310 | int do_altivec = 1; | ^~~~~~~~~~ tests/test_verify_cigars.c:309:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable] 309 | int do_avx2 = 1; | ^~~~~~~ tests/test_verify_cigars.c:308:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable] 308 | int do_sse41 = 1; | ^~~~~~~~ tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable] 307 | int do_sse2 = 1; | ^~~~~~~ /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify tests/test_verify-test_verify.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_basic tests/test_basic.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_pssm tests/test_pssm.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_12 tests/test_12.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_64 tests/test_64.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p29 tests/test_p29.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_p59 tests/test_p59.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/traceback tests/traceback.o libparasail.la /bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z,relro -Wl,-z,now -o tests/test_align tests/test_align.o libparasail.la libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p59 tests/test_p59.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz libtool: link: gcc -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/parasail-2.6.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make check-TESTS make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[3]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' PASS: tests/test_isa PASS: tests/test_basic PASS: tests/test_verify.test ============================================================================ Testsuite summary for Pairwise Sequence Alignment Library 2.6.2 ============================================================================ # TOTAL: 3 # PASS: 3 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/parasail-2.6.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[2]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libparasail.so.8.1.2 /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.so.8.1.2 libtool: install: (cd /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libparasail.so.8.1.2 libparasail.so.8 || { rm -f libparasail.so.8 && ln -s libparasail.so.8.1.2 libparasail.so.8; }; }) libtool: install: (cd /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libparasail.so.8.1.2 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.8.1.2 libparasail.so; }; }) libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin' libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin/parasail_aligner libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/bin/parasail_stats /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 parasail.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail' /usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/include/parasail/matrices' /usr/bin/mkdir -p '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 parasail-1.pc '/build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_install cp `find .libs -name "libparasail*.a" | head -n1` \ debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.a d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" \ usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libparasail-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libparasail8/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.a debian/libparasail-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.so debian/libparasail-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.so.8 debian/libparasail8/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/parasail-2.6.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.so.8.1.2 debian/libparasail8/usr/lib/aarch64-linux-gnu PKGDEV=libparasail-dev PKGSHL=libparasail8 install -d -m 755 debian/libparasail-dev/usr mv debian/tmp/usr/include debian/libparasail-dev/usr install -d -m 755 debian/libparasail-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libparasail-dev/usr/lib/aarch64-linux-gnu/pkgconfig rm debian/libparasail-dev/usr/lib/aarch64-linux-gnu/libparasail.a dh_install -p libparasail-dev .libs/*.a usr/lib/aarch64-linux-gnu find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_fixperms find debian -name "*.c" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/parasail-2.6.2+dfsg' dh_missing dh_dwz -a dwz: debian/parasail/usr/bin/parasail_aligner: DWARF compression not beneficial - old size 585137 new size 585246 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libparasail-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libparasail8-dbgsym' in '../libparasail8-dbgsym_2.6.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.6.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libparasail8' in '../libparasail8_2.6.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.6.2+dfsg-2_arm64.deb'. dpkg-deb: building package 'parasail' in '../parasail_2.6.2+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../parasail_2.6.2+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../parasail_2.6.2+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2461656 and its subdirectories I: Current time: Mon Dec 15 17:35:08 -12 2025 I: pbuilder-time-stamp: 1765863308 Tue Nov 12 23:12:10 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Tue Nov 12 23:12:10 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Tue Nov 12 23:15:43 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Tue Nov 12 23:15:44 UTC 2024 I: parasail_2.6.2+dfsg-2_arm64.changes: Format: 1.8 Date: Fri, 16 Aug 2024 09:03:57 +0200 Source: parasail Binary: libparasail-dev libparasail8 libparasail8-dbgsym parasail parasail-dbgsym Architecture: arm64 Version: 2.6.2+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libparasail-dev - Development heaaders and static libraries for parasail libparasail8 - Lib with various pairwise sequence alignment algorithms parasail - Aligner based on libparasail Closes: 1075361 Changes: parasail (2.6.2+dfsg-2) unstable; urgency=medium . * gcc-14.patch: new: fix incompatible pointer types. (Closes: #1075361) * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: e6407ec38efd001a38d9e257106ca5841c0db849 188228 libparasail-dev_2.6.2+dfsg-2_arm64.deb 4ed1f3a217ce1f042b83769d4c85415dc36989dd 1042956 libparasail8-dbgsym_2.6.2+dfsg-2_arm64.deb 009c7f4f238a535ef8545373f437c0d80448f3e5 412212 libparasail8_2.6.2+dfsg-2_arm64.deb fe293ea8bc0a1abf9dac730f90344b9cbaae5611 332348 parasail-dbgsym_2.6.2+dfsg-2_arm64.deb 5b2451cfd1389973ca1e468c3cda201fdbc95310 8372 parasail_2.6.2+dfsg-2_arm64.buildinfo 4f1746abf251f6b0c426f12dbb24171827d91a0c 60828 parasail_2.6.2+dfsg-2_arm64.deb Checksums-Sha256: 4bdb5e71ff4a1f5c2e89bea1e2fc695f45dd7c3683f0d2ccf92823540057a2b2 188228 libparasail-dev_2.6.2+dfsg-2_arm64.deb aae40cef9ade44c7b6ad43eebdd09740e4f2ca0fda874caaf0c3f5190b8e8ad0 1042956 libparasail8-dbgsym_2.6.2+dfsg-2_arm64.deb d12c7d1ffebfa21c8504b754d65ca7e565f314bb20c6688e2c8804575ff1e594 412212 libparasail8_2.6.2+dfsg-2_arm64.deb f46886be68763cf858ef2efb2db1aa32c195ac39957f967de789a6e1e63ae25a 332348 parasail-dbgsym_2.6.2+dfsg-2_arm64.deb 879e62ededcd2099e0f8061d6e081357950cdc78333403baed5ea409ce0f09d1 8372 parasail_2.6.2+dfsg-2_arm64.buildinfo d9ed77c6d120af5db6cfd3a37f224b828d8720fc7cf14f69c2a55fd0788af7d6 60828 parasail_2.6.2+dfsg-2_arm64.deb Files: 4f6ebd31d604c836f4fb19948879266e 188228 libdevel optional libparasail-dev_2.6.2+dfsg-2_arm64.deb 4427e8ef2dac6b6f3243b09fe5249cad 1042956 debug optional libparasail8-dbgsym_2.6.2+dfsg-2_arm64.deb d2755b3c01800b221272f3e0fb2496ba 412212 libs optional libparasail8_2.6.2+dfsg-2_arm64.deb 38907699e81ddbc90cf2ade86164ee20 332348 debug optional parasail-dbgsym_2.6.2+dfsg-2_arm64.deb 5349f7aa177fea245984abca6ae9370a 8372 science optional parasail_2.6.2+dfsg-2_arm64.buildinfo 8aba8ecf6cdbd529f016fb58aa12c1b0 60828 science optional parasail_2.6.2+dfsg-2_arm64.deb Tue Nov 12 23:15:45 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_13-45452.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/parasail_2.6.2+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/parasail_2.6.2+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/parasail_2.6.2+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/b1/parasail_2.6.2+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.354J6zb2/b2/parasail_2.6.2+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.411s) 0.411s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 757ms CPU time consumed: 757ms Tue Nov 12 23:15:46 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 12 23:15:46 UTC 2024 I: parasail from trixie built successfully and reproducibly on arm64. Tue Nov 12 23:15:47 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 12 23:15:47 UTC 2024 I: Submitting 12K b1/parasail_2.6.2+dfsg-2_arm64.buildinfo.asc Tue Nov 12 23:15:48 UTC 2024 I: Submitting 12K b2/parasail_2.6.2+dfsg-2_arm64.buildinfo.asc Tue Nov 12 23:15:49 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 12 23:15:49 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 12 23:15:49 UTC 2024 I: Removing signed parasail_2.6.2+dfsg-2_arm64.buildinfo.asc files: removed './b1/parasail_2.6.2+dfsg-2_arm64.buildinfo.asc' removed './b2/parasail_2.6.2+dfsg-2_arm64.buildinfo.asc'