Wed Dec 25 12:29:16 UTC 2024 I: starting to build nthash/trixie/arm64 on jenkins on '2024-12-25 12:28' Wed Dec 25 12:29:16 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/78158/console.log Wed Dec 25 12:29:16 UTC 2024 I: Downloading source for trixie/nthash=2.3.0+dfsg-2 --2024-12-25 12:29:17-- http://deb.debian.org/debian/pool/main/n/nthash/nthash_2.3.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1467 (1.4K) [text/prs.lines.tag] Saving to: ‘nthash_2.3.0+dfsg-2.dsc’ 0K . 100% 194M=0s 2024-12-25 12:29:17 (194 MB/s) - ‘nthash_2.3.0+dfsg-2.dsc’ saved [1467/1467] Wed Dec 25 12:29:17 UTC 2024 I: nthash_2.3.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: nthash Binary: libnthash-dev, nthash Architecture: any Version: 2.3.0+dfsg-2 Maintainer: Debian Med Packaging Team Homepage: https://github.com/bcgsc/ntHash Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/nthash Vcs-Git: https://salsa.debian.org/med-team/nthash.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), cmake, libbtllib-dev, libomp-dev, libargparse-dev Package-List: libnthash-dev deb libdevel optional arch=any nthash deb science optional arch=any Checksums-Sha1: 95866739487ea8929299f23cd5c7b0f733179875 149256 nthash_2.3.0+dfsg.orig.tar.xz 6038526eb6dc26344b3ac80cd93208d4ff85b18e 5064 nthash_2.3.0+dfsg-2.debian.tar.xz Checksums-Sha256: a78028dc015ecb5a278f8ea2b1200a87d51d19c0f9cbc3f1a9b3ea0b6a1f3f2b 149256 nthash_2.3.0+dfsg.orig.tar.xz 6deff4aae3b18f03ed839d9f95324d9019a7f7cde752be0aab4b163a0d488aca 5064 nthash_2.3.0+dfsg-2.debian.tar.xz Files: 5dea1bb8633987135a6303e17b518743 149256 nthash_2.3.0+dfsg.orig.tar.xz 6a1b16e3880df4d3296441198e6cb6a6 5064 nthash_2.3.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIgEARYIADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZ0sbQhIcbmlsZXNoQGRl Ymlhbi5vcmcACgkQKieQS9ckPtq0YAD/USiLNO1PJv0EDqvT8zdaJIByQN6Wrw/u z31YUieCqvgA/RnpNXA4OnDakcqHsSy6n9TqMLv2jjgqwH9EfmenvZQG =jpI0 -----END PGP SIGNATURE----- Wed Dec 25 12:29:17 UTC 2024 I: Checking whether the package is not for us Wed Dec 25 12:29:17 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Wed Dec 25 12:29:17 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Wed Dec 25 12:30:08 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 27 06:52:18 -12 2026 I: pbuilder-time-stamp: 1769539938 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nthash_2.3.0+dfsg-2.dsc] I: copying [./nthash_2.3.0+dfsg.orig.tar.xz] I: copying [./nthash_2.3.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 30 14:03:46 2024 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nthash_2.3.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting nthash in nthash-2.3.0+dfsg dpkg-source: info: unpacking nthash_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking nthash_2.3.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_btllib.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2968479/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6d9d9e3814c64f52ad5a9b04b74d73e3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2968479' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/pbuilderrc_UsNn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/b1 --logfile b1/build.log nthash_2.3.0+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2968479/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libbtllib-dev, libomp-dev, libargparse-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20082 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libbtllib-dev; however: Package libbtllib-dev is not installed. pbuilder-satisfydepends-dummy depends on libomp-dev; however: Package libomp-dev is not installed. pbuilder-satisfydepends-dummy depends on libargparse-dev; however: Package libargparse-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libargparse-dev{a} libbrotli1{a} libbtllib-dev{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-d3{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libomp-19-dev{a} libomp-dev{a} libomp5-19{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsdsl-dev{a} libsdsl3{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} wget{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults psmisc publicsuffix 0 packages upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 76.5 MB of archives. After unpacking 371 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-4 [256 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-3 [198 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-6 [1130 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-12 [91.4 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 wget arm64 1.24.5-2 [966 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-3 [723 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.5-1 [2223 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 33 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.1-1 [325 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.5-1 [9403 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 53 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-3 [1532 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libargparse-dev arm64 3.1-1 [20.1 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libsdsl3 arm64 2.1.1+dfsg-5 [180 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libsdsl-dev arm64 2.1.1+dfsg-5 [428 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.1-1 [332 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 samtools arm64 1.20-3+b1 [629 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libbtllib-dev arm64 1.4.10+dfsg-1+b1 [185 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.6-1 [23.3 MB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libomp5-19 arm64 1:19.1.6-1 [567 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-3 [810 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-3 [1906 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.8-3 [1983 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libomp-19-dev arm64 1:19.1.6-1 [1149 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libomp-dev arm64 1:19.0-63 [5768 B] Fetched 76.5 MB in 0s (172 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20082 files and directories currently installed.) Preparing to unpack .../00-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package netbase. Preparing to unpack .../01-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../02-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../03-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../04-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../07-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. 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Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../69-libdeflate0_1.22-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.22-1) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../70-libhtscodecs2_1.6.1-1_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../71-libhts3t64_1.20+ds-2_arm64.deb ... Unpacking libhts3t64:arm64 (1.20+ds-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../72-libncurses6_6.5-2+b1_arm64.deb ... Unpacking libncurses6:arm64 (6.5-2+b1) ... Selecting previously unselected package samtools. Preparing to unpack .../73-samtools_1.20-3+b1_arm64.deb ... Unpacking samtools (1.20-3+b1) ... Selecting previously unselected package libbtllib-dev. Preparing to unpack .../74-libbtllib-dev_1.4.10+dfsg-1+b1_arm64.deb ... Unpacking libbtllib-dev (1.4.10+dfsg-1+b1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../75-libedit2_3.1-20240808-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20240808-1) ... Selecting previously unselected package libz3-4:arm64. Preparing to unpack .../76-libz3-4_4.13.3-1_arm64.deb ... Unpacking libz3-4:arm64 (4.13.3-1) ... Selecting previously unselected package libllvm19:arm64. Preparing to unpack .../77-libllvm19_1%3a19.1.6-1_arm64.deb ... Unpacking libllvm19:arm64 (1:19.1.6-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../78-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../79-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../80-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libomp5-19:arm64. Preparing to unpack .../81-libomp5-19_1%3a19.1.6-1_arm64.deb ... Unpacking libomp5-19:arm64 (1:19.1.6-1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../82-libpython3.12-minimal_3.12.8-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../83-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../84-libpython3.12-stdlib_3.12.8-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-3) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../85-libpython3.12t64_3.12.8-3_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.8-3) ... Selecting previously unselected package libomp-19-dev. Preparing to unpack .../86-libomp-19-dev_1%3a19.1.6-1_arm64.deb ... Unpacking libomp-19-dev (1:19.1.6-1) ... Selecting previously unselected package libomp-dev:arm64. Preparing to unpack .../87-libomp-dev_1%3a19.0-63_arm64.deb ... Unpacking libomp-dev:arm64 (1:19.0-63) ... Setting up libhtscodecs2:arm64 (1.6.1-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up libargparse-dev:arm64 (3.1-1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libedit2:arm64 (3.1-20240808-1) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:arm64 (3.12.8-3) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 27 18:52:42 UTC 2026. Universal Time is now: Tue Jan 27 18:52:42 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.13.3-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcpptoml-dev (0.1.1-3) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libncurses6:arm64 (6.5-2+b1) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up libjs-d3 (3.5.17-4) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libsdsl3:arm64 (2.1.1+dfsg-5) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libdivsufsort3:arm64 (2.0.1-6+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libdivsufsort-dev:arm64 (2.0.1-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libllvm19:arm64 (1:19.1.6-1) ... Setting up gettext (0.22.5-3) ... Setting up libsdsl-dev:arm64 (2.1.1+dfsg-5) ... Setting up wget (1.24.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libomp5-19:arm64 (1:19.1.6-1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libcurl4t64:arm64 (8.11.1-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.1-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up cmake (3.30.5-1) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-3) ... Setting up debhelper (13.20) ... Setting up samtools (1.20-3+b1) ... Setting up libpython3.12t64:arm64 (3.12.8-3) ... Setting up libbtllib-dev (1.4.10+dfsg-1+b1) ... Setting up libomp-19-dev (1:19.1.6-1) ... Setting up libomp-dev:arm64 (1:19.0-63) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nthash-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nthash_2.3.0+dfsg-2_source.changes dpkg-buildpackage: info: source package nthash dpkg-buildpackage: info: source version 2.3.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' rm -rf docs make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_auto_build --no-parallel --buildsystem=cmake cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/nthash-2.3.0+dfsg -B/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/nthash_lib.dir/build.make CMakeFiles/nthash_lib.dir/depend make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/nthash_lib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/nthash_lib.dir/build.make CMakeFiles/nthash_lib.dir/build make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' [ 12%] Building CXX object CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -fopenmp -MD -MT CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o -MF CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o.d -o CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/src/nthash/nthash.cpp [ 25%] Building CXX object CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -fopenmp -MD -MT CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o -MF CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o.d -o CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/src/nthash/nthash_consts.cpp [ 37%] Building CXX object CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -fopenmp -MD -MT CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o -MF CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o.d -o CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/src/nthash/nthash_lowlevel.cpp [ 50%] Linking CXX static library libnthash.a /usr/bin/cmake -P CMakeFiles/nthash_lib.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nthash_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libnthash.a CMakeFiles/nthash_lib.dir/src/nthash/nthash.cpp.o CMakeFiles/nthash_lib.dir/src/nthash/nthash_consts.cpp.o CMakeFiles/nthash_lib.dir/src/nthash/nthash_lowlevel.cpp.o /usr/bin/ranlib libnthash.a make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' [ 50%] Built target nthash_lib make -f CMakeFiles/nthash.dir/build.make CMakeFiles/nthash.dir/depend make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/nthash.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/nthash.dir/build.make CMakeFiles/nthash.dir/build make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object CMakeFiles/nthash.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -fopenmp -MD -MT CMakeFiles/nthash.dir/main.cpp.o -MF CMakeFiles/nthash.dir/main.cpp.o.d -o CMakeFiles/nthash.dir/main.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/main.cpp [ 75%] Linking CXX executable nthash /usr/bin/cmake -E cmake_link_script CMakeFiles/nthash.dir/link.txt --verbose=1 /usr/bin/c++ -g -Wall -Wextra -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/nthash.dir/main.cpp.o -o nthash libnthash.a -lbtllib make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target nthash make -f CMakeFiles/nthash_tests.dir/build.make CMakeFiles/nthash_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/nthash_tests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/nthash_tests.dir/build.make CMakeFiles/nthash_tests.dir/build make[4]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' [ 87%] Building CXX object CMakeFiles/nthash_tests.dir/tests/tests.cpp.o /usr/bin/c++ -I/build/reproducible-path/nthash-2.3.0+dfsg/include -I/build/reproducible-path/nthash-2.3.0+dfsg/vendor/argparse/include -g -Wall -Wextra -fopenmp -MD -MT CMakeFiles/nthash_tests.dir/tests/tests.cpp.o -MF CMakeFiles/nthash_tests.dir/tests/tests.cpp.o.d -o CMakeFiles/nthash_tests.dir/tests/tests.cpp.o -c /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp [100%] Linking CXX executable nthash_tests /usr/bin/cmake -E cmake_link_script CMakeFiles/nthash_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -Wall -Wextra -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/nthash_tests.dir/tests/tests.cpp.o -o nthash_tests libnthash.a -lbtllib make[4]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' [100%] Built target nthash_tests make[3]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: nthash_tests 1: Test command: /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu/nthash_tests 1: Working Directory: /build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu 1: Test timeout computed to be: 10000000 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer hash values 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer rolling 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer rolling vs ntbase hash values 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing canonical hashing 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer back rolling 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing k-mer peeking 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing skipping Ns 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing base substitution 1: Testing RNA 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing block parsing 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seed hash values 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seeds 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing spaced seed back roll 1: Testing rolling spaced seeds vs masked hashing 1: Testing reset function 1: /build/reproducible-path/nthash-2.3.0+dfsg/tests/tests.cpp: Testing canonical hashing in spaced seeds 1/1 Test #1: nthash_tests ..................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.01 sec make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_before_dh_missing make[1]: Entering directory '/build/reproducible-path/nthash-2.3.0+dfsg' find debian/tmp -type f \( -name LICENSE -o -name ChangeLog \) -delete make[1]: Leaving directory '/build/reproducible-path/nthash-2.3.0+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libnthash-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libnthash-dev' in '../libnthash-dev_2.3.0+dfsg-2_arm64.deb'. dpkg-deb: building package 'nthash' in '../nthash_2.3.0+dfsg-2_arm64.deb'. dpkg-deb: building package 'nthash-dbgsym' in '../nthash-dbgsym_2.3.0+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../nthash_2.3.0+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../nthash_2.3.0+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2968479 and its subdirectories I: Current time: Tue Jan 27 06:53:05 -12 2026 I: pbuilder-time-stamp: 1769539985 Wed Dec 25 12:30:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Wed Dec 25 12:30:08 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Wed Dec 25 12:31:06 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Wed Dec 25 12:31:07 UTC 2024 I: nthash_2.3.0+dfsg-2_arm64.changes: Format: 1.8 Date: Sat, 30 Nov 2024 19:23:38 +0530 Source: nthash Binary: libnthash-dev nthash nthash-dbgsym Architecture: arm64 Version: 2.3.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: libnthash-dev - Recursive hash function for hashing all possible k-mers in a DNA/ nthash - Methods to evaluate runtime and uniformity tests for hashing meth Closes: 1087552 Changes: nthash (2.3.0+dfsg-2) unstable; urgency=medium . * Team Upload. * Fixup Build for arm64 (Closes: #1087552) * Bump Standards-Version to 4.7.0 (no changes needed) * Get rid of copy of argparse.hpp * Drop myself from uploaders field Checksums-Sha1: 4d0c48af681b4afc73d8d9b346ce9813f050b857 47876 libnthash-dev_2.3.0+dfsg-2_arm64.deb 05b6e5a3b123c2d52226380db68153fffb56d3a7 550204 nthash-dbgsym_2.3.0+dfsg-2_arm64.deb e7fd65ba6a5726820d02de674276f2ab0c8342ae 7348 nthash_2.3.0+dfsg-2_arm64.buildinfo abdb51a65bba1ff5501e621cec0c325384577fc8 183268 nthash_2.3.0+dfsg-2_arm64.deb Checksums-Sha256: 7c9bff51d65efa4b80019e42ef8df288413326192333a40ff6086bb47faf703f 47876 libnthash-dev_2.3.0+dfsg-2_arm64.deb 3fc79a39cbdb399add588ccfe3edfb7efd4c9c2e6a8d1dc2592dec7c79c40c2b 550204 nthash-dbgsym_2.3.0+dfsg-2_arm64.deb 47289397178ed1d529bddcf29dd22156de3f06853ffe19f8a02c45d03cce59e4 7348 nthash_2.3.0+dfsg-2_arm64.buildinfo bd533c8e774dee5af82e7119ff56b607e357d2d988a5f001f94641dd0c1e0c74 183268 nthash_2.3.0+dfsg-2_arm64.deb Files: 8cf985188bda3438a552cc0f0b75cb5f 47876 libdevel optional libnthash-dev_2.3.0+dfsg-2_arm64.deb 9bd69161f9f087a3f8199b5effa2007e 550204 debug optional nthash-dbgsym_2.3.0+dfsg-2_arm64.deb f219349fc230c62a5fac23cfecbe2819 7348 science optional nthash_2.3.0+dfsg-2_arm64.buildinfo d15b56bd09431115148a137b4103dac3 183268 science optional nthash_2.3.0+dfsg-2_arm64.deb Wed Dec 25 12:31:08 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-78158.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/nthash_2.3.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/nthash_2.3.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/nthash_2.3.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/b1/nthash_2.3.0+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.z1oA2z9u/b2/nthash_2.3.0+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.339s) 0.339s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 639ms CPU time consumed: 638ms Wed Dec 25 12:31:09 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Wed Dec 25 12:31:09 UTC 2024 I: nthash from trixie built successfully and reproducibly on arm64. Wed Dec 25 12:31:10 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Dec 25 12:31:10 UTC 2024 I: Submitting 12K b1/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc Wed Dec 25 12:31:11 UTC 2024 I: Submitting 12K b2/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc Wed Dec 25 12:31:12 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Dec 25 12:31:12 UTC 2024 I: Done submitting .buildinfo files. Wed Dec 25 12:31:12 UTC 2024 I: Removing signed nthash_2.3.0+dfsg-2_arm64.buildinfo.asc files: removed './b1/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc' removed './b2/nthash_2.3.0+dfsg-2_arm64.buildinfo.asc'