Thu May 2 09:38:11 UTC 2024 I: starting to build ntcard/trixie/arm64 on jenkins on '2024-05-02 09:37' Thu May 2 09:38:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/16395/console.log Thu May 2 09:38:11 UTC 2024 I: Downloading source for trixie/ntcard=1.2.2+dfsg-8 --2024-05-02 09:38:11-- http://deb.debian.org/debian/pool/main/n/ntcard/ntcard_1.2.2%2bdfsg-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2239 (2.2K) [text/prs.lines.tag] Saving to: ‘ntcard_1.2.2+dfsg-8.dsc’ 0K .. 100% 282M=0s 2024-05-02 09:38:11 (282 MB/s) - ‘ntcard_1.2.2+dfsg-8.dsc’ saved [2239/2239] Thu May 2 09:38:11 UTC 2024 I: ntcard_1.2.2+dfsg-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ntcard Binary: ntcard Architecture: amd64 arm64 loong64 mips64el ppc64el ppc64 riscv64 s390x Version: 1.2.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Étienne Mollier Homepage: https://github.com/bcgsc/ntCard Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ntcard Vcs-Git: https://salsa.debian.org/med-team/ntcard.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: ntcard deb science optional arch=amd64,arm64,loong64,mips64el,ppc64el,ppc64,riscv64,s390x Checksums-Sha1: 41dbffe6384de113dec420f1cb68f90969aa03db 62710 ntcard_1.2.2+dfsg.orig.tar.gz b95209e4cb66c25dd6f7fa081256d3497416e1b0 772184 ntcard_1.2.2+dfsg-8.debian.tar.xz Checksums-Sha256: 74d063a840f04ede0442c7ca061b569ac5423b9632beb120d80e283728ac5345 62710 ntcard_1.2.2+dfsg.orig.tar.gz b45ae75e29d8159947ac2ef7058dbf13304afb7c285aaed68e3824bb5f682b5e 772184 ntcard_1.2.2+dfsg-8.debian.tar.xz Files: 184d4ad9728fdc3c6a1f301e07d2fa20 62710 ntcard_1.2.2+dfsg.orig.tar.gz f04951fa1c62e77bd059f13a222fe7d2 772184 ntcard_1.2.2+dfsg-8.debian.tar.xz Dgit: f8dd578227d48aedcefd64871096c8b6d94168ad debian archive/debian/1.2.2+dfsg-8 https://git.dgit.debian.org/ntcard -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV53jMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo+Ww//VaJ4F+EgisX2aB4mfclX4YmLo5WT r8NXbk58vGUQ1z8QXVID50ZDgyWp7FQZjlNijE3xy+UNNR+e8gPS21NJ/bdiIJL6 9KhmUBXW1d7p02cwOarn+cio1vcLQimvXoVfkwtS4e8faFKeK9hT+t2asJ/KJxDa wjHZ3LkkSR2CcpMEX9mv6qyZZ7kg3olz3e6hWfLJTAmprMPS4eoSQXGcAonDVwoZ 7Yz+KJdbKRCeTCI6FH19Y2EoP6ydV7NOtDCEpGEot8iR3AjjgYASJkoIfhPXWUzV TRA6oJyjUlJgGxrftoBfBTyCGhXaWr2Yh2qFpSnoVOOoJP7+Il+ocCGnIlOs7Y9T 6EX4QnrYmt2HJInWaVzW/L2ujKykLtAL09utpPw7QcIUL8DrYcO4buGJyWPMADoU why7wiRiWMevTX9KMyTZOcUr5WZIf3MPVJVNzcmgM/T1g9hbGr1IplJvbPFRhdH0 Y8f6kB0CCZqKBwG88HhSDbXuYjtubXL1Dq+d4fsUZtHJfQ5WNndHuuq++SwDnY4Y IWN5uys4SwEPRtGnP1yxhqQ1btjWw6eTMtwsgzMJcJj9wMJ0LweahnhjrduU6NUy hOtenIkEzDUCgEiJh44bPgdPKz2XQii7R+MbUE8V/agJM2MGEV+w4JHBe5mOy/hU Vq2FuT062DQzc2I= =+Brl -----END PGP SIGNATURE----- Thu May 2 09:38:11 UTC 2024 I: Checking whether the package is not for us Thu May 2 09:38:11 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu May 2 09:38:11 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu May 2 09:39:10 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 4 04:01:14 -12 2025 I: pbuilder-time-stamp: 1749052874 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ntcard_1.2.2+dfsg-8.dsc] I: copying [./ntcard_1.2.2+dfsg.orig.tar.gz] I: copying [./ntcard_1.2.2+dfsg-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 13 16:39:15 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ntcard_1.2.2+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting ntcard in ntcard-1.2.2+dfsg dpkg-source: info: unpacking ntcard_1.2.2+dfsg.orig.tar.gz dpkg-source: info: unpacking ntcard_1.2.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-packaged-nthash.patch dpkg-source: info: applying fix-clean-target.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2786885/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='194d43bbeef44304834c27b596dfdffe' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2786885' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/pbuilderrc_qz6w --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/b1 --logfile b1/build.log ntcard_1.2.2+dfsg-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 26 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2786885/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19915 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 75.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Fetched 18.7 MB in 0s (88.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19915 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3+b1_arm64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_arm64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ntcard-1.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ntcard_1.2.2+dfsg-8_source.changes dpkg-buildpackage: info: source package ntcard dpkg-buildpackage: info: source version 1.2.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:29: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:29: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:29: the top level configure.ac:38: warning: The macro `AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1766: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:38: the top level configure.ac:19: installing './compile' configure.ac:35: installing './config.guess' configure.ac:35: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './depcomp' debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' cp -a debian/vendor/*.hpp /build/reproducible-path/ntcard-1.2.2+dfsg make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes ./configure: line 3675: test: syntax error: `-O2' unexpected checking for gawk... (cached) mawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for dlfcn.h... yes checking for fcntl.h... yes checking for float.h... yes checking for limits.h... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/param.h... yes checking for zlib.h... no checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for dup2... yes checking for gethostname... yes checking for getopt_long... yes checking for getpagesize... yes checking for memset... yes checking for strdup... yes checking for strerror... yes checking for strtoul... yes checking for pid_t... yes checking for fork... yes checking for vfork... yes checking for vprintf... yes checking for working fork... yes checking for working vfork... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for GNU libc compatible realloc... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for ptrdiff_t... yes checking for mode_t... yes checking for pid_t... (cached) yes checking for size_t... yes checking for ssize_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for sqrt in -lm... yes checking for pow... yes checking for sqrt... yes checking for ceilf... yes checking for dlsym in -ldl... yes checking for gzwrite in -lz... no checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' Making all in data make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ntcard-ntcard.o `test -f 'ntcard.cpp' || echo './'`ntcard.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/nthll-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/nthll-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/nthll-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o nthll-nthll.o `test -f 'nthll.cpp' || echo './'`nthll.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/ntcard-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/ntcard-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Common/ntcard-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z,relro -Wl,-z,now -o nthll Common/nthll-Uncompress.o Common/nthll-SignalHandler.o Common/nthll-Fcontrol.o nthll-nthll.o -ldl -lm g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z,relro -Wl,-z,now -o ntcard Common/ntcard-Uncompress.o Common/ntcard-SignalHandler.o Common/ntcard-Fcontrol.o ntcard-ntcard.o -ldl -lm make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' echo "I: Tests try to download external files, skip build time tests" I: Tests try to download external files, skip build time tests make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/ntcard/ make -j12 install DESTDIR=/build/reproducible-path/ntcard-1.2.2\+dfsg/debian/ntcard AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' Making install in data make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard' /usr/bin/install -c -m 644 ChangeLog CITATION.bib LICENSE README.md '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard' /usr/bin/install -c ntcard nthll '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' dh_installdocs debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' find debian -name 'LICENSE' | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ntcard' in '../ntcard_1.2.2+dfsg-8_arm64.deb'. dpkg-deb: building package 'ntcard-dbgsym' in '../ntcard-dbgsym_1.2.2+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ntcard_1.2.2+dfsg-8_arm64.buildinfo dpkg-genchanges --build=binary -O../ntcard_1.2.2+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2786885 and its subdirectories I: Current time: Wed Jun 4 04:02:09 -12 2025 I: pbuilder-time-stamp: 1749052929 Thu May 2 09:39:11 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu May 2 09:39:11 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu May 2 09:40:41 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu May 2 09:40:42 UTC 2024 I: ntcard_1.2.2+dfsg-8_arm64.changes: Format: 1.8 Date: Wed, 13 Dec 2023 14:56:57 +0100 Source: ntcard Binary: ntcard ntcard-dbgsym Architecture: arm64 Version: 1.2.2+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ntcard - Streaming algorithm to estimate cardinality in genomics datasets Closes: 1047206 1049666 Changes: ntcard (1.2.2+dfsg-8) unstable; urgency=medium . * fix-clean-target.patch: new: fix upstream clean target. (Closes: #1049666) * d/clean: relax to glob *.hpp. The initial file list was missing one file. This change is done at the risk of covering too many files in the future. (Closes: #1047206) Checksums-Sha1: b586762f20b0e7e9dc3299d563279cf90c6b6ad1 307360 ntcard-dbgsym_1.2.2+dfsg-8_arm64.deb d2870ae734997ef01de4bbeab35cb1e7e01d633c 5112 ntcard_1.2.2+dfsg-8_arm64.buildinfo 63727335b3fb833fe283aadbc88c64bd5f4e3a66 39752 ntcard_1.2.2+dfsg-8_arm64.deb Checksums-Sha256: 91a0143770947eef1462016a3f631d64e1437a38f1d1460eac6900feec1997be 307360 ntcard-dbgsym_1.2.2+dfsg-8_arm64.deb 236438f18d50c5c4c44af970ff76985274bb6ff5db1c04fd7c18575563e3229c 5112 ntcard_1.2.2+dfsg-8_arm64.buildinfo 73bfcd619a872dc75d5d7f8216f1ea00b1938526f5027aae7fea7d198a95d18d 39752 ntcard_1.2.2+dfsg-8_arm64.deb Files: 904b15a97d389a43dee030fd6076a631 307360 debug optional ntcard-dbgsym_1.2.2+dfsg-8_arm64.deb 3eda3dad6def8714deffe9e70208cbf7 5112 science optional ntcard_1.2.2+dfsg-8_arm64.buildinfo 91aac6af204e83b7687ef0e220ad09bd 39752 science optional ntcard_1.2.2+dfsg-8_arm64.deb Thu May 2 09:40:43 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_13-16395.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/ntcard_1.2.2+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/ntcard_1.2.2+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/ntcard_1.2.2+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/b1/ntcard_1.2.2+dfsg-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.uR28rbWX/b2/ntcard_1.2.2+dfsg-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.376s) 0.376s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 719ms CPU time consumed: 719ms Thu May 2 09:40:44 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 2 09:40:44 UTC 2024 I: ntcard from trixie built successfully and reproducibly on arm64. Thu May 2 09:40:45 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 2 09:40:45 UTC 2024 I: Submitting 8.0K b1/ntcard_1.2.2+dfsg-8_arm64.buildinfo.asc Thu May 2 09:40:48 UTC 2024 I: Submitting 8.0K b2/ntcard_1.2.2+dfsg-8_arm64.buildinfo.asc Thu May 2 09:40:50 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 2 09:40:50 UTC 2024 I: Done submitting .buildinfo files. Thu May 2 09:40:50 UTC 2024 I: Removing signed ntcard_1.2.2+dfsg-8_arm64.buildinfo.asc files: removed './b1/ntcard_1.2.2+dfsg-8_arm64.buildinfo.asc' removed './b2/ntcard_1.2.2+dfsg-8_arm64.buildinfo.asc'