Fri Jun 7 18:09:30 UTC 2024 I: starting to build mmseqs2/trixie/arm64 on jenkins on '2024-06-07 18:09' Fri Jun 7 18:09:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/22613/console.log Fri Jun 7 18:09:30 UTC 2024 I: Downloading source for trixie/mmseqs2=15-6f452+ds-2 --2024-06-07 18:09:31-- http://deb.debian.org/debian/pool/main/m/mmseqs2/mmseqs2_15-6f452%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2284 (2.2K) [text/prs.lines.tag] Saving to: ‘mmseqs2_15-6f452+ds-2.dsc’ 0K .. 100% 207M=0s 2024-06-07 18:09:31 (207 MB/s) - ‘mmseqs2_15-6f452+ds-2.dsc’ saved [2284/2284] Fri Jun 7 18:09:31 UTC 2024 I: mmseqs2_15-6f452+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mmseqs2 Binary: mmseqs2, mmseqs2-examples Architecture: amd64 arm64 mips64el ppc64el ia64 kfreebsd-amd64 riscv64 loong64 all Version: 15-6f452+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/soedinglab/MMseqs2 Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mmseqs2 Vcs-Git: https://salsa.debian.org/med-team/mmseqs2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Build-Depends-Arch: cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev, libxxhash-dev Package-List: mmseqs2 deb science optional arch=amd64,arm64,mips64el,ppc64el,ia64,kfreebsd-amd64,riscv64,loong64 mmseqs2-examples deb science optional arch=all Checksums-Sha1: b2aea6f6b140cdf9cee9acaff2481e58fbebda7a 6770980 mmseqs2_15-6f452+ds.orig.tar.xz 1e34eaf2c8fdcdb3d8f491eac9dd5012a1db8e83 6548600 mmseqs2_15-6f452+ds-2.debian.tar.xz Checksums-Sha256: 030ba32d58b8a34016c25d953ff3067c63705e346d02ee15df09b73c8efdea2e 6770980 mmseqs2_15-6f452+ds.orig.tar.xz 3d6d0fc44c4728a7df6f35dc9afc08c774533e809e843aa00112c28bc2efcc15 6548600 mmseqs2_15-6f452+ds-2.debian.tar.xz Files: f072939874061057828878e97a85c92e 6770980 mmseqs2_15-6f452+ds.orig.tar.xz fdb34d0ef47202ac056418b248817ffb 6548600 mmseqs2_15-6f452+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmVCu9oACgkQPCZ2P2xn 5uIEYQ//b3u0+IQzLzkKExAL6WhjHc5JFVrlgcrlpP+JL214nYoSz07KEiQEmUR4 bkfsRIgOCHtCPXL6FgRR/FcgYl7QVX0mgu797hjrKZ3brcvKCYC/vDL9pFbqO3Nu JYUwju0yArg/w/amcXIH5YLPb2Gj2cy51DOO+az5ddlSpR5XcD+Kyu93eJEa3Bq4 QBsOSf4ChtD5sBGfKWuQykGU9j2Wkj6g95JWYw36Rq0gAMWbZMs/NvR9pcehm/s0 J7NKf4y/7I0bb05DsWQ+6J8mDw9kWniBY4lLbxNSeFqUztHukIIP+0pVTHWc0D9N lWmQCRQdr1DcccLGhqQNL5daSk03zqc26NpvVa7h85kyMTagkJGmhVaVnB5f40DM mJv2jzyXKlDFAQ8S777/4O2unNz7CGQeQTw7k/33jOVTwR9r3M+uTHoQL+sw9JAg dj/ZBaWHdy3mNiZq4pdkcHho68Rzkqxuv24DUYQrIdix7xXxOlIgOyPdv2LVQkG/ I8ew3jbw32NHP+64A1aJimLL9e9eEgaKbM0MZ4Zb/InfMMFs3tFDkbvLzhRrloA2 mtaz38JrO9v0Jr2a+YFUbJVQBibbqZqaIPaBtuu63hA06q+Pb1q68kNP/x+Kqgyp sXt3dJLQSNcHP8c28/uGf2zCZYX4FxHafeCUpH2ArTFy33rZPMs= =GWd6 -----END PGP SIGNATURE----- Fri Jun 7 18:09:31 UTC 2024 I: Checking whether the package is not for us Fri Jun 7 18:09:31 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Jun 7 18:09:31 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Jun 7 18:12:06 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 7 06:09:41 -12 2024 I: pbuilder-time-stamp: 1717783781 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mmseqs2_15-6f452+ds-2.dsc] I: copying [./mmseqs2_15-6f452+ds.orig.tar.xz] I: copying [./mmseqs2_15-6f452+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 1 20:58:02 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mmseqs2_15-6f452+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting mmseqs2 in mmseqs2-15-6f452+ds dpkg-source: info: unpacking mmseqs2_15-6f452+ds.orig.tar.xz dpkg-source: info: unpacking mmseqs2_15-6f452+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_tests.patch dpkg-source: info: applying fix_util_installation.patch dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3808551/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7d14903472a643c9a9fdc9ddda65eebf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3808551' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/pbuilderrc_7SWu --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/b1 --logfile b1/build.log mmseqs2_15-6f452+ds-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 6 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3808551/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev, libxxhash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19746 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgzstream-dev{a} libgzstream0{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libxxhash-dev{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After unpacking 144 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.1-8 [95.3 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.2-2.1 [320 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-5 [207 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.8.0-1 [411 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-4 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.29.4-1 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.29.4-1 [9058 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-5.1 [31.8 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libgzstream0 arm64 1.5+git20171107.9a20658-2 [7288 B] Get: 56 http://deb.debian.org/debian trixie/main arm64 libgzstream-dev arm64 1.5+git20171107.9a20658-2 [7488 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxxhash-dev arm64 0.8.2-2+b1 [81.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.5+dfsg2-2 [323 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 35.3 MB in 0s (81.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19746 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.1-8_arm64.deb ... Unpacking bsdextrautils (2.40.1-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 15-6f452+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_auto_clean rm -Rf build-* make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_auto_configure -- -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=15-6f452+ds-2 -DNATIVE_ARCH=0 cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=15-6f452\+ds-2 -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/reproducible-path/mmseqs2-15-6f452+ds -- Project Directory: /build/reproducible-path/mmseqs2-15-6f452+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/aarch64-linux-gnu/libzstd.a CMake Deprecation Warning at lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done (5.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/CMakeFiles 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/version/Version.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp [ 5%] Linking CXX static library libversion.a [ 5%] Generating ../generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true VTML40.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 6%] Generating ../generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h /usr/bin/ranlib libversion.a [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd 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CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_sim.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [ 7%] Linking C static library libmicrotar.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp [ 7%] Built target version [ 7%] Generating ../generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 367 | ret->value = s->value; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 446 | ret->value = NAN; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /usr/bin/ranlib libmicrotar.a [ 9%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp [ 9%] Built target microtar cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h [ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib [ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp [ 10%] Built target cacode [ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h [ 12%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 13%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 [ 13%] Generating ../generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h [ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h.tmp [ 13%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h [ 13%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib [ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 15%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp [ 16%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf [ 16%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp [ 17%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 17%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h [ 18%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h [ 19%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp [ 20%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h [ 20%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp [ 20%] Generating ../generated/map.sh.h [ 20%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/map.sh.h [ 21%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 21%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h [ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp [ 23%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h [ 24%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp [ 25%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp [ 25%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 25%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp [ 26%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh [ 27%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp [ 27%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh [ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh [ 27%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h [ 27%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated [ 27%] Generating ../generated/linsearch.sh.h [ 28%] Generating ../generated/databases.sh.h [ 28%] Generating ../generated/iterativepp.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < 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/build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h [ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < 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/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [ 28%] Built target generated make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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-DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/13/cstring:42, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: In function ‘void* memset(void*, int, size_t)’, inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: /usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 931 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: /usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 931 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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../lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o ../lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o /usr/bin/ranlib libmmseqs-framework.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [ 99%] Built target mmseqs-framework make -f src/CMakeFiles/mmseqs.dir/build.make src/CMakeFiles/mmseqs.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src/CMakeFiles/mmseqs.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/mmseqs.dir/build.make src/CMakeFiles/mmseqs.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [ 99%] Building CXX object src/CMakeFiles/mmseqs.dir/mmseqs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs.dir/mmseqs.cpp.o -MF CMakeFiles/mmseqs.dir/mmseqs.cpp.o.d -o CMakeFiles/mmseqs.dir/mmseqs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs cd /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs.dir/mmseqs.cpp.o -o mmseqs libmmseqs-framework.a version/libversion.a -latomic ../lib/tinyexpr/libtinyexpr.a -lm -Wl,-Bstatic -lzstd ../lib/microtar/libmicrotar.a -Wl,-Bdynamic -lgzstream -lz -lbz2 make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' [100%] Built target mmseqs make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/obj-aarch64-linux-gnu' dh_install -pmmseqs2 usr/bin/mmseqs usr/bin/ make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_install --arch mkdir -p debian/mmseqs2/usr/lib/mmseqs2/test cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataGap debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataLinear debian/mmseqs2/usr/lib/mmseqs2/test/ #cp -r obj-aarch64-linux-gnu/src/test debian/mmseqs2/usr/lib/mmseqs2/ # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_install --indep # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/*.lib \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiag.out \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiagTargetCov.out make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-1), " make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_md5sums dh_builddeb dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_15-6f452+ds-2_arm64.deb'. dpkg-deb: building package 'mmseqs2' in '../mmseqs2_15-6f452+ds-2_arm64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_15-6f452+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_15-6f452+ds-2_arm64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_15-6f452+ds-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3808551 and its subdirectories I: Current time: Fri Jun 7 06:12:01 -12 2024 I: pbuilder-time-stamp: 1717783921 Fri Jun 7 18:12:12 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Jun 7 18:12:12 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Jun 7 18:14:57 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Jun 7 18:14:58 UTC 2024 I: mmseqs2_15-6f452+ds-2_arm64.changes: Format: 1.8 Date: Wed, 01 Nov 2023 21:57:39 +0100 Source: mmseqs2 Binary: mmseqs2 mmseqs2-dbgsym mmseqs2-examples Architecture: arm64 all Version: 15-6f452+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: mmseqs2 - ultra fast and sensitive protein search and clustering mmseqs2-examples - optional resources for the mmseqs2 package Closes: 1047999 Changes: mmseqs2 (15-6f452+ds-2) unstable; urgency=medium . * Team upload. * amd64: clean up all build directories. Closes: #1047999 * d/control: acknowledge patch from sangmeng to add loong64 support. Checksums-Sha1: bb62aa39c0460200597664b5a64bd3b615036d31 24164596 mmseqs2-dbgsym_15-6f452+ds-2_arm64.deb be2b9bb0a9dbf7390c265cd66ce227379a8f406b 9571796 mmseqs2-examples_15-6f452+ds-2_all.deb 31f19d7b5090f44f8f85bccecf89101cd1e9f767 6560 mmseqs2_15-6f452+ds-2_arm64.buildinfo 8ce0e577a033ee689e67feb6a551dde6ab86eeb5 7074588 mmseqs2_15-6f452+ds-2_arm64.deb Checksums-Sha256: d394be3daa5970d97203cb6cfa41321056cbfb88f1ab13a559356aa1fd990634 24164596 mmseqs2-dbgsym_15-6f452+ds-2_arm64.deb 4fae41b3533eda45e56712a81ab285ab9e8ae92136de79d17d0b3544fa69cb42 9571796 mmseqs2-examples_15-6f452+ds-2_all.deb 7f0e1feb69ae613d05ef0db6bdf70b2ba6a2567707cb8029d56321d69872842f 6560 mmseqs2_15-6f452+ds-2_arm64.buildinfo a19853254e2544f0d6063d4247dd2c51b2c2f86880537e0aeb343e0774354056 7074588 mmseqs2_15-6f452+ds-2_arm64.deb Files: 98be92ffccf260d7823879b5ee8b8eec 24164596 debug optional mmseqs2-dbgsym_15-6f452+ds-2_arm64.deb fee59f7e3d0f64ea8509c6585f6155aa 9571796 science optional mmseqs2-examples_15-6f452+ds-2_all.deb b25828e18ea1d4cd139bcc9a31e37db3 6560 science optional mmseqs2_15-6f452+ds-2_arm64.buildinfo fe56309e557a04aed0bf255d386ad949 7074588 science optional mmseqs2_15-6f452+ds-2_arm64.deb Fri Jun 7 18:14:59 UTC 2024 I: diffoscope 270 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_20-22613.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/mmseqs2_15-6f452+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/mmseqs2_15-6f452+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/mmseqs2_15-6f452+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/b1/mmseqs2_15-6f452+ds-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Iaqigq9h/b2/mmseqs2_15-6f452+ds-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.869s) 0.869s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.468s) 0.468s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.348s CPU time consumed: 1.329s Fri Jun 7 18:15:01 UTC 2024 I: diffoscope 270 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 7 18:15:01 UTC 2024 I: mmseqs2 from trixie built successfully and reproducibly on arm64. Fri Jun 7 18:15:03 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Jun 7 18:15:03 UTC 2024 I: Submitting 8.0K b1/mmseqs2_15-6f452+ds-2_arm64.buildinfo.asc Fri Jun 7 18:15:04 UTC 2024 I: Submitting 8.0K b2/mmseqs2_15-6f452+ds-2_arm64.buildinfo.asc Fri Jun 7 18:15:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 7 18:15:05 UTC 2024 I: Done submitting .buildinfo files. Fri Jun 7 18:15:05 UTC 2024 I: Removing signed mmseqs2_15-6f452+ds-2_arm64.buildinfo.asc files: removed './b1/mmseqs2_15-6f452+ds-2_arm64.buildinfo.asc' removed './b2/mmseqs2_15-6f452+ds-2_arm64.buildinfo.asc'