Tue Dec 3 18:30:19 UTC 2024 I: starting to build lucy/trixie/arm64 on jenkins on '2024-12-03 18:30' Tue Dec 3 18:30:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/39378/console.log Tue Dec 3 18:30:19 UTC 2024 I: Downloading source for trixie/lucy=1.20-5 --2024-12-03 18:30:20-- http://deb.debian.org/debian/pool/main/l/lucy/lucy_1.20-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2058 (2.0K) [text/prs.lines.tag] Saving to: ‘lucy_1.20-5.dsc’ 0K .. 100% 294M=0s 2024-12-03 18:30:20 (294 MB/s) - ‘lucy_1.20-5.dsc’ saved [2058/2058] Tue Dec 3 18:30:20 UTC 2024 I: lucy_1.20-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lucy Binary: lucy Architecture: any Version: 1.20-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://lucy.sourceforge.net Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/lucy Vcs-Git: https://salsa.debian.org/med-team/lucy.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: lucy deb science optional arch=any Checksums-Sha1: 890006f550efd06745e7156359ee8b519d3b5f62 1457619 lucy_1.20.orig.tar.gz b556263d5e37fe754c5efc6fd583590630ad8b41 5204 lucy_1.20-5.debian.tar.xz Checksums-Sha256: e06313f6d60b1b1429aad6c86c02df22edc6337613fafa5db0a09a09c7a35af3 1457619 lucy_1.20.orig.tar.gz 169db115ef7b02ea40bafe0f9801e884874cfea91f8f6ba3f71ae404493dffec 5204 lucy_1.20-5.debian.tar.xz Files: 8f9e2d1541793015f35d3b72302e348b 1457619 lucy_1.20.orig.tar.gz e34f2721fa94a0600c083e5b8b0e8ca0 5204 lucy_1.20-5.debian.tar.xz Dgit: eb711b04500a176a8fcdb7f3b6ba482592e2f377 debian archive/debian/1.20-5 https://git.dgit.debian.org/lucy -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmabiJMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrG9hAApSYvoIjObjpwmZtGkvyyRwrI7k1V pvwqgaB2CAjC4DtuErWeXKVbykrNUwccZexfdw8pAY3HMTWn0kqyBVjs367BQUqI Em1Hhb/NKkjOP1ESn6s9ls5TZiSCuaLKoBJ67uWnePAikIzXKRULKS/j6xRYDsXg kZdPeD/aHMgop4RbYp9+UeqkdzLMf2aeMikPeeOa+wSC06j3GD1XnvYE5yhzPIfq 6YUfztEBAnacsOOYd2ib1KR6fzlgVsKN0p8/r6Y9NYOyBZltjmEsCn9Lnx1F0EZ+ IxJYI7yiVJ27e5Os22hrtiwH5zi8XTSwOCHdgo1S8D8jovjBWincVpIUNs2GahVn 5PtmlUZ94Jv0soQg8wpRe18Jpuud+jMm5WXYGU42a7WrAJRfJhI9KLbjEEzHOeI+ Azauz9PCuzJhqTbUIXmxWO4q7me89Nzdr0heStULBdudlnSYunMCG91QRiAkc9Mv zFSStsnt5EebIz44lYXTBnp/7SYfcbccavGyhKHK9G5+qtBQjDxwRyIIcq/rZKnN eYa3L/+dW7J0hEZKI00rLrFNxk7peQY+RqiacEd2f9ouOd6kP3T3eELIftgivBq6 ehxlvfzk7bjTeAEa8M2zgIfQ1hBXacv32HqnOEwqzRe+6i3frJ2uW4x+pVVbrbeH KM2V5gKvI3EY0w8= =S9Ye -----END PGP SIGNATURE----- Tue Dec 3 18:30:20 UTC 2024 I: Checking whether the package is not for us Tue Dec 3 18:30:20 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Tue Dec 3 18:30:20 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Tue Dec 3 18:30:50 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 3 06:30:22 -12 2024 I: pbuilder-time-stamp: 1733250622 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lucy_1.20-5.dsc] I: copying [./lucy_1.20.orig.tar.gz] I: copying [./lucy_1.20-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jul 20 09:51:15 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lucy_1.20-5.dsc: no acceptable signature found dpkg-source: info: extracting lucy in lucy-1.20 dpkg-source: info: unpacking lucy_1.20.orig.tar.gz dpkg-source: info: unpacking lucy_1.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying helpingMakefile.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying declare-function-prototypes-in-header.patch dpkg-source: info: applying fixup-manpage.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2826732/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ee6c41da11134fb696de12044794d5e5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2826732' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/pbuilderrc_T5cC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/b1 --logfile b1/build.log lucy_1.20-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2826732/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20080 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (136 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20080 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lucy_1.20-5_source.changes dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/lucy-1.20' rm -f lucy.o qual_trim.o abi.o vector.o splice.o poly.o lucy make[1]: Leaving directory '/build/reproducible-path/lucy-1.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lucy.substvars debian/files rm -fr -- debian/lucy/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lucy-1.20' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lucy.o lucy.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c qual_trim.c:10:1: warning: "/*" within comment [-Wcomment] 10 | /* qual_trim.c - Quality trimming algorithm which determines a "clean" qual_trim.c:11:1: warning: "/*" within comment [-Wcomment] 11 | /* range for a sequence based on its phred quality values. qual_trim.c:12:1: warning: "/*" within comment [-Wcomment] 12 | /* qual_trim.c:13:1: warning: "/*" within comment [-Wcomment] 13 | /* Written by Michael Holmes, 4/13/99. qual_trim.c:14:1: warning: "/*" within comment [-Wcomment] 14 | /* qual_trim.c:15:1: warning: "/*" within comment [-Wcomment] 15 | /* 1/31/2000, Michael Holmes -- Added default_windows(). qual_trim.c:16:1: warning: "/*" within comment [-Wcomment] 16 | /* 2/15/2000, Michael Holmes -- Added bracket_clean_range() and qual_trim.c:17:1: warning: "/*" within comment [-Wcomment] 17 | /* set_bracket(). qual_trim.c:18:1: warning: "/*" within comment [-Wcomment] 18 | /* 2/18/2000, Michael Holmes -- Minor change to test-mode output only. qual_trim.c:19:1: warning: "/*" within comment [-Wcomment] 19 | /* qual_trim.c:20:1: warning: "/*" within comment [-Wcomment] 20 | /* Copyright (C) 1999, 2000, The Institute for Genomic Research. All rights qual_trim.c:21:1: warning: "/*" within comment [-Wcomment] 21 | /* reserved. qual_trim.c:22:1: warning: "/*" within comment [-Wcomment] 22 | /* qual_trim.c:23:1: warning: "/*" within comment [-Wcomment] 23 | /* Note: phred quality values are based on the log (base 10) of the qual_trim.c:24:1: warning: "/*" within comment [-Wcomment] 24 | /* probability that the corresponding base call is in error: qual_trim.c:25:1: warning: "/*" within comment [-Wcomment] 25 | /* qual_trim.c:26:1: warning: "/*" within comment [-Wcomment] 26 | /* Q = -10 log(P_error) qual_trim.c:27:1: warning: "/*" within comment [-Wcomment] 27 | /* qual_trim.c:28:1: warning: "/*" within comment [-Wcomment] 28 | /* Thanks to Granger Sutton for valuable suggestions. qual_trim.c:29:1: warning: "/*" within comment [-Wcomment] 29 | /* qual_trim.c:30:1: warning: "/*" within comment [-Wcomment] 30 | /* The main functions of interest to external code (such as lucy) are qual_trim.c:31:1: warning: "/*" within comment [-Wcomment] 31 | /* default_windows() and quality_trim(). The grim() function emulates the qual_trim.c:32:1: warning: "/*" within comment [-Wcomment] 32 | /* interface that was used by the old quality trimmimg algorithm (grim), qual_trim.c:33:1: warning: "/*" within comment [-Wcomment] 33 | /* but it is not called by lucy. The main() function is compiled only if qual_trim.c:34:1: warning: "/*" within comment [-Wcomment] 34 | /* TEST_THIS_CODE is #defined. qual_trim.c:35:1: warning: "/*" within comment [-Wcomment] 35 | /* qual_trim.c:36:1: warning: "/*" within comment [-Wcomment] 36 | /* The calling hierarchy is: qual_trim.c:37:1: warning: "/*" within comment [-Wcomment] 37 | /* qual_trim.c:38:1: warning: "/*" within comment [-Wcomment] 38 | /* main() qual_trim.c:39:1: warning: "/*" within comment [-Wcomment] 39 | /* grim() qual_trim.c:40:1: warning: "/*" within comment [-Wcomment] 40 | /* default_windows() qual_trim.c:41:1: warning: "/*" within comment [-Wcomment] 41 | /* quality_trim() qual_trim.c:42:1: warning: "/*" within comment [-Wcomment] 42 | /* bracket_clean_range() qual_trim.c:43:1: warning: "/*" within comment [-Wcomment] 43 | /* multi_window_trim() qual_trim.c:44:1: warning: "/*" within comment [-Wcomment] 44 | /* window_trim() qual_trim.c:45:1: warning: "/*" within comment [-Wcomment] 45 | /* multi_window_trim() [recursive call] qual_trim.c:46:1: warning: "/*" within comment [-Wcomment] 46 | /* average_error_trim() qual_trim.c:47:1: warning: "/*" within comment [-Wcomment] 47 | /* qual_trim.c:48:1: warning: "/*" within comment [-Wcomment] 48 | /**************************************************************************/ lucy.c: In function 'hashstring': lucy.c:112:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 112 | if (g = value&0xF0000000) { | ^ lucy.c: In function 'worker': lucy.c:173:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 173 | int id=(int)arg; | ^ done! lucy.c: In function 'main': lucy.c:532:51: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 532 | if (pthread_create(&threads[i], NULL, worker, (void*)i)) | ^ lucy.c:793:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 793 | (i=(int)fgets(buf, BUFFER_LENGTH, spl_file)) && buf[0]!='>'; ) { | ^ lucy.c:632:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 632 | fgets(buf, BUFFER_LENGTH, qul_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ abi.c: In function 'abi_align': abi.c:196:18: warning: array subscript has type 'char' [-Wchar-subscripts] 196 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:196:24: warning: array subscript has type 'char' [-Wchar-subscripts] 196 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:222:18: warning: array subscript has type 'char' [-Wchar-subscripts] 222 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:222:24: warning: array subscript has type 'char' [-Wchar-subscripts] 222 | if (badness[a[i]][b[j]]) { | ~^~~ abi.c:227:46: warning: array subscript has type 'char' [-Wchar-subscripts] 227 | l=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ abi.c:295:45: warning: array subscript has type 'char' [-Wchar-subscripts] 295 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ splice.c: In function 'splice_align_right': splice.c:190:30: warning: array subscript has type 'char' [-Wchar-subscripts] 190 | Score(0,0)=max_score=match[*a][*b]; | ^~ abi.c:302:30: warning: array subscript has type 'char' [-Wchar-subscripts] 302 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ splice.c:212:17: warning: array subscript has type 'char' [-Wchar-subscripts] 212 | score=match[*a][b[j]]; | ^~ abi.c:314:45: warning: array subscript has type 'char' [-Wchar-subscripts] 314 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ splice.c:212:22: warning: array subscript has type 'char' [-Wchar-subscripts] 212 | score=match[*a][b[j]]; | ~^~~ splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts] 17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splice.c:213:34: note: in expansion of macro 'Direc' 213 | top=Score(0,j-1)+top_penalty[Direc(0,j-1)]; | ^~~~~ abi.c:321:30: warning: array subscript has type 'char' [-Wchar-subscripts] 321 | if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts] 17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splice.c:235:36: note: in expansion of macro 'Direc' 235 | top=Score(i,j-1)+top_penalty[Direc(i,j-1)]; | ^~~~~ abi.c:335:45: warning: array subscript has type 'char' [-Wchar-subscripts] 335 | l>=0 && r>=0 && badness[a[l]][b[r]]==0 | ~^~~ splice.c:17:38: warning: array subscript has type 'char' [-Wchar-subscripts] 17 | #define Direc(x, y) splice_direc_base[(y)*width+(x)] | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splice.c:236:38: note: in expansion of macro 'Direc' 236 | left=Score(i-1,j)+left_penalty[Direc(i-1,j)]; | ^~~~~ abi.c:342:30: warning: array subscript has type 'char' [-Wchar-subscripts] 342 | if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) | ~~~~~~~~^~~~~~~~~~~~~~~~~ vector.c: In function 'construct_vector_tags': vector.c:86:34: warning: array subscript has type 'char' [-Wchar-subscripts] 86 | accr|=tag_code(rev_code[seq[len-k%len-1]]); | ~~~^~~~~~~~~~~~~ qual_trim.c:215:1: warning: "/*" within comment [-Wcomment] 215 | /* Determines some number of candidate clean ranges using a particular qual_trim.c:216:1: warning: "/*" within comment [-Wcomment] 216 | /* window size. qual_trim.c:217:1: warning: "/*" within comment [-Wcomment] 217 | /* qual_trim.c:218:1: warning: "/*" within comment [-Wcomment] 218 | /* Globals used: qual_trim.c:219:1: warning: "/*" within comment [-Wcomment] 219 | /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:220:1: warning: "/*" within comment [-Wcomment] 220 | /* ( at each end of clean range) qual_trim.c:221:1: warning: "/*" within comment [-Wcomment] 221 | /* qual_trim.c:333:1: warning: "/*" within comment [-Wcomment] 333 | /* Finds the largest subsequence of a sequence whose average probability qual_trim.c:334:1: warning: "/*" within comment [-Wcomment] 334 | /* of error does not exceed a specified maximum. qual_trim.c:335:1: warning: "/*" within comment [-Wcomment] 335 | /* qual_trim.c:336:1: warning: "/*" within comment [-Wcomment] 336 | /* Globals used: qual_trim.c:337:1: warning: "/*" within comment [-Wcomment] 337 | /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:338:1: warning: "/*" within comment [-Wcomment] 338 | /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:339:1: warning: "/*" within comment [-Wcomment] 339 | /* ( at each end of clean range) qual_trim.c:340:1: warning: "/*" within comment [-Wcomment] 340 | /* qual_trim.c:435:1: warning: "/*" within comment [-Wcomment] 435 | /* Determines a single clean range, after recursively considering all of qual_trim.c:436:1: warning: "/*" within comment [-Wcomment] 436 | /* the specified window sizes. Calls average_error_trim to trim the qual_trim.c:437:1: warning: "/*" within comment [-Wcomment] 437 | /* results of the final window based on overall average probability of qual_trim.c:438:1: warning: "/*" within comment [-Wcomment] 438 | /* error. qual_trim.c:439:1: warning: "/*" within comment [-Wcomment] 439 | /* qual_trim.c:440:1: warning: "/*" within comment [-Wcomment] 440 | /* Globals used: qual_trim.c:441:1: warning: "/*" within comment [-Wcomment] 441 | /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:442:1: warning: "/*" within comment [-Wcomment] 442 | /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:443:1: warning: "/*" within comment [-Wcomment] 443 | /* ( at each end of clean range) qual_trim.c:444:1: warning: "/*" within comment [-Wcomment] 444 | /* qual_trim.c:570:1: warning: "/*" within comment [-Wcomment] 570 | /* Sets the window size and average probability of error allowed for the qual_trim.c:571:1: warning: "/*" within comment [-Wcomment] 571 | /* terminal windows that "bracket" the candidate clean range. qual_trim.c:572:1: warning: "/*" within comment [-Wcomment] 572 | /* qual_trim.c:573:1: warning: "/*" within comment [-Wcomment] 573 | /* Globals used: qual_trim.c:574:1: warning: "/*" within comment [-Wcomment] 574 | /* int bracket_window, (size of terminal window) qual_trim.c:575:1: warning: "/*" within comment [-Wcomment] 575 | /* double bracket_error (allowable average prob. error in window) qual_trim.c:576:1: warning: "/*" within comment [-Wcomment] 576 | /* qual_trim.c:588:1: warning: "/*" within comment [-Wcomment] 588 | /* Finds the leftmost window, and the rightmost window, which meet the qual_trim.c:589:1: warning: "/*" within comment [-Wcomment] 589 | /* specified error criterion. The purpose of this function is to bracket qual_trim.c:590:1: warning: "/*" within comment [-Wcomment] 590 | /* the portion of the sequence that is of decent quality -- i.e. to qual_trim.c:591:1: warning: "/*" within comment [-Wcomment] 591 | /* eliminate the really bad quality stuff that is often found on either qual_trim.c:592:1: warning: "/*" within comment [-Wcomment] 592 | /* end. The beginning of the first matching window, and the end of the qual_trim.c:593:1: warning: "/*" within comment [-Wcomment] 593 | /* last, bracket the sequence range that will be looked at to find the qual_trim.c:594:1: warning: "/*" within comment [-Wcomment] 594 | /* final clean range. qual_trim.c:595:1: warning: "/*" within comment [-Wcomment] 595 | /* qual_trim.c:596:1: warning: "/*" within comment [-Wcomment] 596 | /* This function is called before the multi_window_trim function, and qual_trim.c:597:1: warning: "/*" within comment [-Wcomment] 597 | /* its results are used to limit the range of sequence that will be qual_trim.c:598:1: warning: "/*" within comment [-Wcomment] 598 | /* considered by that function. qual_trim.c:599:1: warning: "/*" within comment [-Wcomment] 599 | /* qual_trim.c:679:1: warning: "/*" within comment [-Wcomment] 679 | /* Determines the clean range. Calls multi_window_trim, which calls both qual_trim.c:680:1: warning: "/*" within comment [-Wcomment] 680 | /* window_trim and average_error_trim. qual_trim.c:681:1: warning: "/*" within comment [-Wcomment] 681 | /* qual_trim.c:682:1: warning: "/*" within comment [-Wcomment] 682 | /* Globals used: qual_trim.c:683:1: warning: "/*" within comment [-Wcomment] 683 | /* int num_windows, (number of windows) qual_trim.c:684:1: warning: "/*" within comment [-Wcomment] 684 | /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:685:1: warning: "/*" within comment [-Wcomment] 685 | /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:686:1: warning: "/*" within comment [-Wcomment] 686 | /* ( for each window size) qual_trim.c:687:1: warning: "/*" within comment [-Wcomment] 687 | /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:688:1: warning: "/*" within comment [-Wcomment] 688 | /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:689:1: warning: "/*" within comment [-Wcomment] 689 | /* ( at each end of clean range) qual_trim.c:690:1: warning: "/*" within comment [-Wcomment] 690 | /* int bracket_window, (size of terminal window) qual_trim.c:691:1: warning: "/*" within comment [-Wcomment] 691 | /* double bracket_error (allowable average prob. error in window) qual_trim.c:692:1: warning: "/*" within comment [-Wcomment] 692 | /* qual_trim.c: In function 'quality_trim': qual_trim.c:706:21: warning: unused variable 'sum' [-Wunused-variable] 706 | double err, sum; | ^~~ qual_trim.c:706:16: warning: unused variable 'err' [-Wunused-variable] 706 | double err, sum; | ^~~ qual_trim.c: At top level: qual_trim.c:793:1: warning: "/*" within comment [-Wcomment] 793 | /* Sets up 3 windows for quality trimming, with the average error allowed qual_trim.c:794:1: warning: "/*" within comment [-Wcomment] 794 | /* in each window calculated from max_avg_error. qual_trim.c:795:1: warning: "/*" within comment [-Wcomment] 795 | /* qual_trim.c:796:1: warning: "/*" within comment [-Wcomment] 796 | /* Globals used: qual_trim.c:797:1: warning: "/*" within comment [-Wcomment] 797 | /* int num_windows, (number of windows) qual_trim.c:798:1: warning: "/*" within comment [-Wcomment] 798 | /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:799:1: warning: "/*" within comment [-Wcomment] 799 | /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:800:1: warning: "/*" within comment [-Wcomment] 800 | /* (for each window size) qual_trim.c:801:1: warning: "/*" within comment [-Wcomment] 801 | /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:802:1: warning: "/*" within comment [-Wcomment] 802 | /* qual_trim.c:827:1: warning: "/*" within comment [-Wcomment] 827 | /* Simulates the functionality of the old grim() function, by calling qual_trim.c:828:1: warning: "/*" within comment [-Wcomment] 828 | /* quality_trim(). qual_trim.c:829:1: warning: "/*" within comment [-Wcomment] 829 | /* qual_trim.c:830:1: warning: "/*" within comment [-Wcomment] 830 | /* Globals used: qual_trim.c:831:1: warning: "/*" within comment [-Wcomment] 831 | /* int num_windows, (number of windows) qual_trim.c:832:1: warning: "/*" within comment [-Wcomment] 832 | /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:833:1: warning: "/*" within comment [-Wcomment] 833 | /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:834:1: warning: "/*" within comment [-Wcomment] 834 | /* (for each window size) qual_trim.c:835:1: warning: "/*" within comment [-Wcomment] 835 | /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:836:1: warning: "/*" within comment [-Wcomment] 836 | /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] 837 | /* ( at each end of clean range) qual_trim.c:838:1: warning: "/*" within comment [-Wcomment] 838 | /* vector.c: In function 'tag_code': vector.c:45:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] 45 | return tmp; | ^~~ vector.c:23:16: note: 'tmp' was declared here 23 | register int tmp; | ^~~ abi.c: In function 'abi_code': abi.c:85:10: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] 85 | return tmp; | ^~~ abi.c:63:16: note: 'tmp' was declared here 63 | register int tmp; | ^~~ rm -f lucy cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lucy-1.20=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -o lucy lucy.o qual_trim.o abi.o vector.o splice.o poly.o -lpthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[1]: Leaving directory '/build/reproducible-path/lucy-1.20' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-qi0DiYvk create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/lucy.substvars rm -fr -- debian/.debhelper/generated/lucy/ debian/lucy/ debian/tmp/ dh_auto_install --destdir=debian/lucy/ install -m0755 -d /build/reproducible-path/lucy-1.20/debian/lucy dh_install install -m0755 -d debian/lucy/usr/bin cp --reflink=auto -a ./lucy debian/lucy/usr/bin/ dh_installdocs install -m0755 -d debian/lucy/usr/share/doc/lucy install -m0755 -d debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.Debian debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.source debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./README.FIRST debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./HISTORY debian/lucy/usr/share/doc/lucy chmod -R u\+rw,go=rX debian/lucy/usr/share/doc install -p -m0644 debian/README.Debian debian/lucy/usr/share/doc/lucy/README.Debian install -p -m0644 debian/copyright debian/lucy/usr/share/doc/lucy/copyright dh_installchangelogs install -m0755 -d debian/lucy/usr/share/doc/lucy install -p -m0644 debian/.debhelper/generated/lucy/dh_installchangelogs.dch.trimmed debian/lucy/usr/share/doc/lucy/changelog.Debian mv debian/lucy/usr/share/doc/lucy/HISTORY debian/lucy/usr/share/doc/lucy/changelog chmod 0644 -- debian/lucy/usr/share/doc/lucy/changelog dh_installexamples install -m0755 -d debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./ARMTM40TR.qul debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./ARMTM40TR.seq debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19 debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19splice debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19splice.for debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./PUC19splice.rev debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./atie.2nd debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./atie.qul debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./atie.seq debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./pSPORT1splice debian/lucy/usr/share/doc/lucy/examples cp --reflink=auto -a ./pSPORT1vector debian/lucy/usr/share/doc/lucy/examples dh_installman install -m0755 -d debian/lucy/usr/share/man/man1/ install -p -m0644 ./lucy.1 debian/lucy/usr/share/man/man1/lucy.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lucy/usr/share/man/man1/lucy.1 mv debian/lucy/usr/share/man/man1/lucy.1.dh-new debian/lucy/usr/share/man/man1/lucy.1 chmod 0644 -- debian/lucy/usr/share/man/man1/lucy.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/lucy chmod a-x usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 gzip -9nf usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 cd '/build/reproducible-path/lucy-1.20' dh_fixperms find debian/lucy ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lucy/usr/share/doc -type f -a -true -a ! -regex 'debian/lucy/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lucy/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/lucy/usr/bin/lucy dh_strip -a install -m0755 -d debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/lucy/usr/bin/lucy debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/4e/976cfce4f84c677549f795e801b2c455bbeefd.debug chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/4e/976cfce4f84c677549f795e801b2c455bbeefd.debug strip --remove-section=.comment --remove-section=.note debian/lucy/usr/bin/lucy objcopy --add-gnu-debuglink debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/4e/976cfce4f84c677549f795e801b2c455bbeefd.debug debian/lucy/usr/bin/lucy install -m0755 -d debian/.debhelper/lucy/dbgsym-root/usr/share/doc ln -s lucy debian/.debhelper/lucy/dbgsym-root/usr/share/doc/lucy-dbgsym install -m0755 -d debian/.debhelper/lucy dh_makeshlibs -a rm -f debian/lucy/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/lucy/DEBIAN dpkg-shlibdeps -Tdebian/lucy.substvars debian/lucy/usr/bin/lucy dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/lucy/DEBIAN dh_gencontrol install -m0755 -d debian/lucy/DEBIAN echo misc:Depends= >> debian/lucy.substvars echo misc:Pre-Depends= >> debian/lucy.substvars install -m0755 -d debian/.debhelper/lucy/dbgsym-root/DEBIAN dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -cdebian/control -Pdebian/.debhelper/lucy/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=lucy-dbgsym "-DDepends=lucy (= \${binary:Version})" "-DDescription=debug symbols for lucy" -DBuild-Ids=4e976cfce4f84c677549f795e801b2c455bbeefd -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/control dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -cdebian/control -Pdebian/lucy chmod 0644 -- debian/lucy/DEBIAN/control dh_md5sums install -m0755 -d debian/lucy/DEBIAN cd debian/lucy >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lucy/DEBIAN/md5sums install -m0755 -d debian/.debhelper/lucy/dbgsym-root/DEBIAN cd debian/.debhelper/lucy/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/.debhelper/lucy/dbgsym-root .. dpkg-deb --root-owner-group --build debian/lucy .. dpkg-deb: building package 'lucy-dbgsym' in '../lucy-dbgsym_1.20-5_arm64.deb'. dpkg-deb: building package 'lucy' in '../lucy_1.20-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../lucy_1.20-5_arm64.buildinfo dpkg-genchanges --build=binary -O../lucy_1.20-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2826732 and its subdirectories I: Current time: Tue Dec 3 06:30:49 -12 2024 I: pbuilder-time-stamp: 1733250649 Tue Dec 3 18:30:51 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Tue Dec 3 18:30:51 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Tue Dec 3 18:31:25 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Tue Dec 3 18:31:25 UTC 2024 I: lucy_1.20-5_arm64.changes: Format: 1.8 Date: Sat, 20 Jul 2024 11:38:49 +0200 Source: lucy Binary: lucy lucy-dbgsym Architecture: arm64 Version: 1.20-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: lucy - DNA sequence quality and vector trimming tool Closes: 1075241 Changes: lucy (1.20-5) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. * d/control: bump to debhelper compat 13. * gcc-14.patch: new: fix implicit types. (Closes: #1075241) Checksums-Sha1: c751d60ea3567b8d5f5f09411121b3006b560bdb 42892 lucy-dbgsym_1.20-5_arm64.deb d92ce42e637c3d5644e34a195bada8150dac9a1f 4892 lucy_1.20-5_arm64.buildinfo 1c18b84bc32f0d2b70b33416cf5ee41a09b76570 911440 lucy_1.20-5_arm64.deb Checksums-Sha256: 353db9585165be778bc4c91c32d07f3e6af3bb6f3168a33b90e23f79ee5e34ab 42892 lucy-dbgsym_1.20-5_arm64.deb 1bd9df1f27ee7b7448a6b32851c7292b5bcc83cf4ae8a052f2f466d2b1e83834 4892 lucy_1.20-5_arm64.buildinfo a89a6c7d0ec1aa1b950938de5906d8bcf81af8feb7f5075384222d4cd1bb837d 911440 lucy_1.20-5_arm64.deb Files: 6477e0d6aa012abed98fdc8d5dfb41af 42892 debug optional lucy-dbgsym_1.20-5_arm64.deb 22539387a95c1cd5fd863c80aece1995 4892 science optional lucy_1.20-5_arm64.buildinfo 65697fa63045a2c1de20fb76c6234ba7 911440 science optional lucy_1.20-5_arm64.deb Tue Dec 3 18:31:26 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_8-39378.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/lucy_1.20-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/lucy_1.20-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/lucy_1.20-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/b1/lucy_1.20-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FjkzY25x/b2/lucy_1.20-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.350s) 0.350s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 697ms CPU time consumed: 685ms Tue Dec 3 18:31:27 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 3 18:31:27 UTC 2024 I: lucy from trixie built successfully and reproducibly on arm64. Tue Dec 3 18:31:28 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 3 18:31:28 UTC 2024 I: Submitting 8.0K b1/lucy_1.20-5_arm64.buildinfo.asc Tue Dec 3 18:31:29 UTC 2024 I: Submitting 8.0K b2/lucy_1.20-5_arm64.buildinfo.asc Tue Dec 3 18:31:31 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 3 18:31:31 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 3 18:31:31 UTC 2024 I: Removing signed lucy_1.20-5_arm64.buildinfo.asc files: removed './b1/lucy_1.20-5_arm64.buildinfo.asc' removed './b2/lucy_1.20-5_arm64.buildinfo.asc'