Thu May 9 23:42:51 UTC 2024 I: starting to build loki/trixie/arm64 on jenkins on '2024-05-09 23:42' Thu May 9 23:42:51 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_17/35225/console.log Thu May 9 23:42:51 UTC 2024 I: Downloading source for trixie/loki=2.4.7.4-10 --2024-05-09 23:42:51-- http://deb.debian.org/debian/pool/main/l/loki/loki_2.4.7.4-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1941 (1.9K) [text/prs.lines.tag] Saving to: ‘loki_2.4.7.4-10.dsc’ 0K . 100% 238M=0s 2024-05-09 23:42:51 (238 MB/s) - ‘loki_2.4.7.4-10.dsc’ saved [1941/1941] Thu May 9 23:42:52 UTC 2024 I: loki_2.4.7.4-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: loki Binary: loki, loki-doc Architecture: any all Version: 2.4.7.4-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/loki Vcs-Git: https://salsa.debian.org/med-team/loki.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: loki deb science optional arch=any loki-doc deb doc optional arch=all Checksums-Sha1: ce7d6ff3ca6159c329ca0f5f6ed633bf265acd33 904260 loki_2.4.7.4.orig.tar.gz 36d1dd1af418942f735e7691ff0562d79e738d19 29080 loki_2.4.7.4-10.debian.tar.xz Checksums-Sha256: 78bc51f47fb756fcdc9ab55bc4c7dd649ee87aaa6bd9be87eac44e4a8eac9eb5 904260 loki_2.4.7.4.orig.tar.gz cc666373faa439b9c1a485904797aa4353829743a92581ab41943498ba6b3f5b 29080 loki_2.4.7.4-10.debian.tar.xz Files: 7764c55d3c3a33584a6f92740210b677 904260 loki_2.4.7.4.orig.tar.gz 707ea1abf958fbd5a98536a5dfdc9f53 29080 loki_2.4.7.4-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl5TeosRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHLog/7BL6jnFWgLE/ORHkJ12vxxWIi8BeLFlXy 0Iuhl2N+JWjmZkngcvZCBQv8lFhJRIc0xOmyoJldoeAm/5USrMSGpDHc1SroX6NJ h9uJBiKdMRNNkZK7fc855kh4SMPccMhRpaP9QSNcC4bZcW6v83uPCQvZQUsEVr52 3vU+2cNM9vAZYyE57YvQowMCrUHrfYdPHB805xv8HvW01WEuXq5ReOEwpRfEPSI1 lEaMeS+htocFXDt0jajNNRVSoZV0FsmI/PfmlV6HXgEfpa2cpaZNoCXuuS0uf7B7 p3Qndvi+QcffFKA79n+L+VSsyXuVOhL593Izv17KQfVvDuSjhSgoEefibTLPfKjw wiawZVUValt9uXxzKflxeeMdiuraOwmg6qjOpqtgO9LRYz0HO8Or4iY9IUa2dpCW 7C6GGo8lPzkfJg13WbHLBNCbiDZxNAlPFXFueu2MQrimchKYXzRFYduBMIbbbQqD p4EmOEF2K+upR941FTpuplbhR4fzrA3WaMbHgt3pSwikamotuKYmO9rLUrvg1y7a URJN2x5cHTXRVCUQH/tneT+hMJHMpgiUZ6VT97oiNE2tgYfC3xi/2WMjDe46YErh 6g6GwIClRMCPCTBMCWQH88MqZGB4Zs12q38KbL/UMMeBDx4MmnStaK21NNTy4T6L pPwOgbRZ/nQ= =ca3c -----END PGP SIGNATURE----- Thu May 9 23:42:52 UTC 2024 I: Checking whether the package is not for us Thu May 9 23:42:52 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu May 9 23:42:52 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu May 9 23:43:45 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 18:05:54 -12 2025 I: pbuilder-time-stamp: 1749708354 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [loki_2.4.7.4-10.dsc] I: copying [./loki_2.4.7.4.orig.tar.gz] I: copying [./loki_2.4.7.4-10.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Feb 24 07:26:03 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./loki_2.4.7.4-10.dsc: no acceptable signature found dpkg-source: info: extracting loki in loki-2.4.7.4 dpkg-source: info: unpacking loki_2.4.7.4.orig.tar.gz dpkg-source: info: unpacking loki_2.4.7.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_utils.patch dpkg-source: info: applying 10_lex.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3174582/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5f62769c0a7c43aaa1774a46eb09d470' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3174582' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/pbuilderrc_V0Jh --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/b1 --logfile b1/build.log loki_2.4.7.4-10.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 9 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3174582/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 75.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Fetched 18.7 MB in 0s (147 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/loki-2.4.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../loki_2.4.7.4-10_source.changes dpkg-buildpackage: info: source package loki dpkg-buildpackage: info: source version 2.4.7.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:4: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.in:4: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.in:4: the top level configure.in:40: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.in:40: the top level configure.in:57: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:57: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:57: the top level configure.in:111: warning: AC_OUTPUT should be used without arguments. configure.in:111: You should run autoupdate. autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_configure -- --exec_prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --exec_prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr checking whether make sets $(MAKE)... yes checking for DMALLOC library Looking for dmalloc.h in ${prefix}/include and libdmalloc.a in ${prefix}/lib/aarch64-linux-gnu Looking for dmalloc.h in /usr/local/include and libdmalloc.a in /usr/local/lib Looking for dmalloc.h in /usr/include and libdmalloc.a in /usr/lib Looking for dmalloc.h in /nonexistent/first-build/include and libdmalloc.a in /nonexistent/first-build/lib checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking for ranlib... /usr/bin/ranlib checking for ar... /usr/bin/ar checking for sed... /usr/bin/sed checking for cp... /usr/bin/cp checking for grep... /usr/bin/grep checking for mv... /usr/bin/mv checking for gzip... /usr/bin/gzip checking for chmod... /usr/bin/chmod checking for perl... /usr/bin/perl checking for makedepend... : checking for sin in -lm... yes checking for accept in -lsocket... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/wait.h that is POSIX.1 compatible... yes checking for fcntl.h... yes checking for limits.h... yes checking for values.h... yes checking for unistd.h... (cached) yes checking for sys/systeminfo.h... no checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for socklen_t... no checking for an ANSI C-conforming const... yes checking for vprintf... yes checking for memcpy... yes checking for regcomp... yes checking for strtod... yes checking for strtol... yes checking for gethostname... yes checking for popen... yes checking for snprintf... yes checking for atexit... yes checking for memmove... yes configure: creating ./config.status config.status: creating Makefile config.status: creating libsrc/Makefile config.status: creating prepsrc/Makefile config.status: creating prepsrc/compat/Makefile config.status: creating lokisrc/Makefile config.status: creating test/Makefile config.status: creating utils/Makefile config.status: creating include/config.h make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' # do nothing here make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' # nothing to do here make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_build -Nloki-doc make -j12 make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make depend) \ done make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' : -I../include/ io_stuff.c ranlib.c genrand.c ran_xtra.c mkbackup.c strsep.c utils.c remember.c peel_utils.c qsort.c min_deg.c bin_tree.c getopt_long.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' : -I../include control_parse.c control_lex.c check_het.c test_het.c prep.c calc_nrm.c write_report.c prep_utils.c gen_elim.c prep_do_peel_op.c write_data.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' : -I../include loki.c loki_peel.c loki_init.c alloc_loki.c loki_sample.c loki_pen.c loki_tlmoves.c meiosis_scan.c loki_identity.c sample_rand.c sample_effects.c loki_setup.c loki_dump.c sample_cens.c handle_res.c print_data.c calc_var_locus.c loki_output.c sample_nu.c loki_complex_peel.c loki_npl.c loki_simple_sample.c loki_simple_peel.c loki_trait_simple_peel.c loki_trait_simple_sample.c get_par_probs.c read_solar_idfile.c peel_to_par.c update_segs.c param_parse.c param_lex.c read_binfiles.c loki_utils.c kinship.c genedrop.c mat_utils.c output_recomb.c seg_pen.c gen_pen.c loki_ibd.c get_founders.c pass_founder_genes.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' : -I../include qavg.c hist.c touch depend make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' touch depend for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o io_stuff.o io_stuff.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ranlib.o ranlib.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o genrand.o genrand.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ran_xtra.o ran_xtra.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mkbackup.o mkbackup.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsep.o strsep.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o remember.o remember.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peel_utils.o peel_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qsort.o qsort.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o min_deg.o min_deg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bin_tree.o bin_tree.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getopt_long.o getopt_long.c /usr/bin/ar cr libgen.a io_stuff.o ranlib.o genrand.o ran_xtra.o mkbackup.o strsep.o utils.o remember.o peel_utils.o qsort.o min_deg.o bin_tree.o getopt_long.o /usr/bin/ranlib libgen.a make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o control_parse.o control_parse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o control_lex.o control_lex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_data.o read_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o setup_ped.o setup_ped.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o recode_fact.o recode_fact.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanup.o cleanup.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restrict_data.o restrict_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o match_records.o match_records.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o init_fam.o init_fam.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o output_data.o output_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_marker_name.o get_marker_name.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep.o prep.c lex.yy.c:2062:12: warning: 'input' defined but not used [-Wunused-function] setup_ped.c: In function 'setup_pedigree': setup_ped.c:426:83: warning: this statement may fall through [-Wimplicit-fallthrough=] 426 | if(i!=id) { | ^ setup_ped.c:430:74: note: here 430 | default: | ^~~~~~~ setup_ped.c: In function 'check_ymark': setup_ped.c:1135:42: warning: pointer 'list' may be used after 'free' [-Wuse-after-free] 1135 | if(pl->type==LINK_Y) list[ny++]=locus; | ^ setup_ped.c:1127:9: note: call to 'free' here 1127 | free(list); | ^~~~~~~~~~ setup_ped.c:1141:17: warning: pointer 'list' may be used after 'free' [-Wuse-after-free] 1141 | do_yprint(i,list,ny); | ^~~~~~~~~~~~~~~~~~~~ setup_ped.c:1127:9: note: call to 'free' here 1127 | free(list); | ^~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o calc_nrm.o calc_nrm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o write_report.o write_report.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep_utils.o prep_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gen_elim.o gen_elim.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep_do_peel_op.o prep_do_peel_op.c write_report.c: In function 'WriteReport': write_report.c:286:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 286 | if(!elem->type&(ST_MODEL|ST_TRAIT)) continue; | ^~~~~~~~~~~ write_report.c:300:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 300 | if(!elem->type&(ST_MODEL|ST_TRAIT)) continue; | ^~~~~~~~~~~ control_lex.l: In function 'yy_orig_lex': control_lex.l:106:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation] 106 | (void)strncpy(linebuf,yytext+1,LINEBUFSIZE); | ^ control_lex.l:95:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation] 95 | (void)strncpy(linebuf,yytext,LINEBUFSIZE); | ^ gen_elim.c: In function 'min_degree': gen_elim.c:1075:31: warning: variable 'best_fg' set but not used [-Wunused-but-set-variable] 1075 | int x,i1,k1,k2,*trans,best_fg=0; | ^~~~~~~ gen_elim.c: In function 'find_sequence': gen_elim.c:1156:24: warning: variable 'mark' set but not used [-Wunused-but-set-variable] 1156 | struct Marker *mark; | ^~~~ gen_elim.c:1155:31: warning: variable 'order1' set but not used [-Wunused-but-set-variable] 1155 | int *g_perm,*order=0,*order1; | ^~~~~~ prep_do_peel_op.c: In function 'do_peel_op': gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o write_data.o write_data.c gen_elim.c: In function 'logical_peel': gen_elim.c:1268:24: warning: variable 'mark' set but not used [-Wunused-but-set-variable] 1268 | struct Marker *mark; | ^~~~ gen_elim.c:1266:34: warning: variable 'pp1' set but not used [-Wunused-but-set-variable] 1266 | struct Peelseq_Head *pp,*pp1; | ^~~ prep_do_peel_op.c:238:26: warning: variable 'fill' set but not used [-Wunused-but-set-variable] 238 | double max_terms,fill; | ^~~~ /usr/bin/ar cr libprep.a control_parse.o control_lex.o read_data.o setup_ped.o recode_fact.o cleanup.o restrict_data.o match_records.o init_fam.o output_data.o get_marker_name.o /usr/bin/ranlib libprep.a (cd compat; make) make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compat.o compat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o merlin.o merlin.c merlin.c: In function 'process_qtdt': merlin.c:59:60: warning: parameter 'error_check' set but not used [-Wunused-but-set-parameter] 59 | int process_qtdt(int argc,char *argv[],char **LogFile,int *error_check,loki_time *lt) | ~~~~~^~~~~~~~~~~ merlin.c:162:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 162 | nmark++; | ~~~~~^~ merlin.c:163:26: note: here 163 | case 'A': | ^~~~ /usr/bin/ar cr libcompat.a compat.o merlin.o /usr/bin/ranlib libcompat.a make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:51: prep] Error 1 make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o param_parse.o param_parse.c gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -DYY_NO_UNPUT param_lex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_binfiles.o read_binfiles.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_utils.o loki_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kinship.o kinship.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o genedrop.o genedrop.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mat_utils.o mat_utils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o output_recomb.o output_recomb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seg_pen.o seg_pen.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gen_pen.o gen_pen.c param_lex.c: In function 'yy_get_next_buffer': param_lex.c:641:32: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 641 | for ( n = 0; n < max_size && \ | ^ param_lex.c:1161:17: note: in expansion of macro 'YY_INPUT' 1161 | YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), | ^~~~~~~~ gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -DIBD_COMPRESS_PROG=\"/usr/bin/gzip\" loki_ibd.c param_lex.c: At top level: param_lex.c:1301:16: warning: 'input' defined but not used [-Wunused-function] 1301 | static int input (void) | ^~~~~ param_lex.c:1260:17: warning: 'yyunput' defined but not used [-Wunused-function] 1260 | static void yyunput (int c, register char * yy_bp ) | ^~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_founders.o get_founders.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pass_founder_genes.o pass_founder_genes.c gen_pen.c: In function 'calc_degree': gen_pen.c:321:31: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 321 | int i1,j,j1,j2,k=0,k1,k2; | ^~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki.o loki.c loki_ibd.c: In function 'SetupIBD': loki_ibd.c:215:102: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long unsigned int' [-Wformat=] 215 | fprintf(stderr,"Asked for 2*n_locations*n_pairs*sizeof(int)=2*%d*%d*%d=%d bytes\n",j,np,sizeof(int),2*j*np*sizeof(int)); | ~^ ~~~~~~~~~~~ | | | | int long unsigned int | %ld loki_ibd.c:215:105: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long unsigned int' [-Wformat=] 215 | fprintf(stderr,"Asked for 2*n_locations*n_pairs*sizeof(int)=2*%d*%d*%d=%d bytes\n",j,np,sizeof(int),2*j*np*sizeof(int)); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld pass_founder_genes.c: In function 'pass_founder_genes': pass_founder_genes.c:35:47: warning: variable 'locus1' set but not used [-Wunused-but-set-variable] 35 | int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1; | ^~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_peel.o loki_peel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_init.o loki_init.c param_lex.l: In function 'yylex': param_lex.l:91:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation] 91 | (void)strncpy(linebuf,yytext+1,512); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ param_lex.l:64:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation] 64 | (void)strncpy(linebuf,yytext,512); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alloc_loki.o alloc_loki.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_sample.o loki_sample.c loki_init.c: In function 'InitValues': loki_init.c:125:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 125 | tau_beta[mod]*=residual_var[mod]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ loki_init.c:126:18: note: here 126 | case 1: | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_pen.o loki_pen.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_tlmoves.o loki_tlmoves.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o meiosis_scan.o meiosis_scan.c loki_tlmoves.c: In function 'sample_mpos': loki_tlmoves.c:152:36: warning: variable 'idd' set but not used [-Wunused-but-set-variable] 152 | int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1; | ^~~ meiosis_scan.c: In function 'meiosis_scan': meiosis_scan.c:162:76: warning: variable 'n_comp1' set but not used [-Wunused-but-set-variable] 162 | int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1; | ^~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_identity.o loki_identity.c loki_peel.c: In function 'peel_locus': loki_peel.c:427:43: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized] 427 | if(z== -DBL_MAX) { | ^ loki_peel.c:145:26: note: 'z' was declared here 145 | double like=0.0,like1,z,z1,theta,Mtp[2],Ptp[2],*pos,*eff,**count,*tpp,*freq1,*count1; | ^ loki_tlmoves.c:210:61: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized] 210 | r=.5*(1.0-exp(.02*(x-x1))); | ~~^~~~ loki_tlmoves.c:153:48: note: 'x' was declared here 153 | double pp[2][50],ct1[2][50],ct2[2][50],x,x1,r,z,z1; | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_rand.o sample_rand.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_effects.o sample_effects.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_setup.o loki_setup.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_dump.o loki_dump.c loki_tlmoves.c: In function 'get_tl_position': loki_tlmoves.c:623:17: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized] 623 | prior[i]+=z; | ^~ loki_tlmoves.c:606:16: note: 'z' was declared here 606 | double z,z1,z2,map_length; | ^ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_cens.o sample_cens.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o handle_res.o handle_res.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o print_data.o print_data.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o calc_var_locus.o calc_var_locus.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_output.o loki_output.c loki_output.c: In function 'OutputSample': loki_output.c:345:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 345 | OutputSample_2(fptr,lp); | ^~~~~~~~~~~~~~~~~~~~~~~ loki_output.c:346:10: note: here 346 | case OUTPUT_VERSION_2_3: | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_nu.o sample_nu.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_complex_peel.o loki_complex_peel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_npl.o loki_npl.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_simple_sample.o loki_simple_sample.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_simple_peel.o loki_simple_peel.c loki_complex_peel.c: In function 'loki_complex_peelop': loki_complex_peel.c:458:169: warning: format '%d' expects argument of type 'int', but argument 8 has type 'long unsigned int' [-Wformat=] 458 | (void)fprintf(stderr,"\nToo many individuals in output R-Function for marker %s\nn_peel = %d, n_all = %d, n_bits1 = %d, required size = %d, LONG_BIT = %d\n",marker[locus].name,n_peel,n_all,n_bits1,n_peel*n_bits1,LK_LONG_BIT); | ~^ | | | int | %ld loki_complex_peel.c:379:16: warning: variable 'max_terms' set but not used [-Wunused-but-set-variable] 379 | double max_terms,*tp,prob=0.0,z,p1,Konst=0.0; | ^~~~~~~~~ loki_simple_sample.c: In function 'loki_simple_sample': loki_simple_sample.c:25:58: warning: variable 'tpp2' set but not used [-Wunused-but-set-variable] 25 | double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2; | ^~~~ loki_simple_sample.c:25:52: warning: variable 'tpp1' set but not used [-Wunused-but-set-variable] 25 | double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2; | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_par_probs.o get_par_probs.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_solar_idfile.o read_solar_idfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peel_to_par.o peel_to_par.c loki_simple_peel.c: In function 'loki_simple_peelop': loki_simple_peel.c:601:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized] 601 | id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i; | ~~~~~~~~~~^~~~ loki_simple_peel.c:27:28: note: 'cm[0]' was declared here 27 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ loki_simple_peel.c:600:54: warning: 'cm[1]' may be used uninitialized [-Wmaybe-uninitialized] 600 | id_set1[i]=(cm[X_PAT]&a1)?l:i1; | ~~~~~~~~~~^~~~ loki_simple_peel.c:27:28: note: 'cm[1]' was declared here 27 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update_segs.o update_segs.c /usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o /usr/bin/ranlib libloki.a loki_simple_peel.c: In function 'loki_simple_peelop_x': loki_simple_peel.c:1279:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized] 1279 | id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i; | ~~~~~~~~~~^~~~ loki_simple_peel.c:723:28: note: 'cm[0]' was declared here 723 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ loki_simple_peel.c:1278:54: warning: 'cm[1]' may be used uninitialized [-Wmaybe-uninitialized] 1278 | id_set1[i]=(cm[X_PAT]&a1)?l:i1; | ~~~~~~~~~~^~~~ loki_simple_peel.c:723:28: note: 'cm[1]' was declared here 723 | lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask; | ^~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:70: loki] Error 1 make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o qavg qavg.c -Wl,-z,relro -Wl,-z,now -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o hist hist.c -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' cd test; if [ -f Makefile ] ; then make ; fi make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/test' /usr/bin/sed s+SED+/usr/bin/sed+g loki_test.in|/usr/bin/sed s+PREP+../prepsrc/prep+g|\ /usr/bin/sed s+LOKI+../lokisrc/loki+g|/usr/bin/sed s+GREP+/usr/bin/grep+g > tmp cp tmp loki_test && chmod 755 loki_test /usr/bin/sed s+COMPRESS+/usr/bin/gzip+g control_gaw9.in > tmp cp tmp control_gaw9 JV test 1 ... Failed JV test 2 ... Failed JV censored data test ... Failed LM sample test ... Failed Major gene test ... Failed GAW9 test ... Failed JV restart test ... Failed make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/test' make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_test -Nloki create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' dh_auto_install -a make -j12 install DESTDIR=/build/reproducible-path/loki-2.4.7.4/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' for subdir in prepsrc lokisrc utils; do \ (cd $subdir; make install) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) mkdir ../bin make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' for file in ext count dist freq sort_error; do \ /usr/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ done for file in qavg hist; do \ /usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' make install prefix=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr bindir=/build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/libsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' for subdir in prepsrc lokisrc utils; do \ (cd $subdir; make install) \ done make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' (cd compat; make) make[4]: Entering directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' make[4]: 'libcompat.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc/compat' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_nrm.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_report.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_utils.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: gen_elim.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: prep_do_peel_op.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: write_data.o:./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_parse.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(control_lex.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(read_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(setup_ped.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(recode_fact.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(cleanup.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(restrict_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(match_records.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(init_fam.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(output_data.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libprep.a(get_marker_name.o):./prepsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(compat.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/./prepsrc/compat/merlin.c:41: multiple definition of `strip_vars'; prep.o:./prepsrc/./prepsrc/prep.c:43: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:32: multiple definition of `from_abt'; prep.o:./prepsrc/../include/utils.h:32: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `AbMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `MMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `IntErr'; prep.o:./prepsrc/../include/utils.h:31: first defined here /usr/bin/ld: compat/libcompat.a(merlin.o):./prepsrc/compat/../../include/utils.h:31: multiple definition of `FMsg'; prep.o:./prepsrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:51: prep] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/prepsrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_init.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: alloc_loki.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_pen.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_tlmoves.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: meiosis_scan.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_identity.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_rand.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_effects.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_setup.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_dump.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_cens.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: handle_res.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: print_data.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: calc_var_locus.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_output.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: sample_nu.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_complex_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_npl.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_peel.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: loki_trait_simple_sample.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: get_par_probs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: read_solar_idfile.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: peel_to_par.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: update_segs.o:./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_parse.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(param_lex.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(read_binfiles.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_utils.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(kinship.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(genedrop.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(output_recomb.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(seg_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(gen_pen.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(loki_ibd.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(get_founders.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ./libloki.a(pass_founder_genes.o):./lokisrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(genrand.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(utils.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(remember.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:32: multiple definition of `from_abt'; loki.o:./lokisrc/../include/utils.h:32: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `AbMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `MMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `IntErr'; loki.o:./lokisrc/../include/utils.h:31: first defined here /usr/bin/ld: ../libsrc/libgen.a(min_deg.o):./libsrc/../include/utils.h:31: multiple definition of `FMsg'; loki.o:./lokisrc/../include/utils.h:31: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:70: loki] Error 1 make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc' make[3]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils' for file in ext count dist freq sort_error; do \ /usr/bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/loki_$file; \ done for file in qavg hist; do \ /usr/bin/cp $file /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/; \ /usr/bin/chmod 755 /build/reproducible-path/loki-2.4.7.4/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/utils' make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' # nothing to do here make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman-arch make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4' dh_installman -a for man in hist.1 loki_count.1 loki_dist.1 loki_ext.1 loki_freq.1 loki_sort_error.1 prep.1 qavg.1 ; do \ ln -s loki.1.gz debian/loki/usr/share/man/man1/${man}.gz ; \ done make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4' dh_installman -Nloki dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'loki' in '../loki_2.4.7.4-10_arm64.deb'. dpkg-deb: building package 'loki-dbgsym' in '../loki-dbgsym_2.4.7.4-10_arm64.deb'. dpkg-deb: building package 'loki-doc' in '../loki-doc_2.4.7.4-10_all.deb'. dpkg-genbuildinfo --build=binary -O../loki_2.4.7.4-10_arm64.buildinfo dpkg-genchanges --build=binary -O../loki_2.4.7.4-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3174582 and its subdirectories I: Current time: Wed Jun 11 18:06:44 -12 2025 I: pbuilder-time-stamp: 1749708404 Thu May 9 23:43:46 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Thu May 9 23:43:46 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Thu May 9 23:44:45 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Thu May 9 23:44:46 UTC 2024 I: loki_2.4.7.4-10_arm64.changes: Format: 1.8 Date: Mon, 24 Feb 2020 08:22:52 +0100 Source: loki Binary: loki loki-dbgsym loki-doc Architecture: arm64 all Version: 2.4.7.4-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: loki - MCMC linkage analysis on general pedigrees loki-doc - MCMC linkage analysis on general pedigrees (PS manual) Changes: loki (2.4.7.4-10) unstable; urgency=medium . * Define test for architecture any only Checksums-Sha1: 5aec9f65e413a98c050f3e24cbec67d8f8151dbe 15336 loki-dbgsym_2.4.7.4-10_arm64.deb fa6b1de1197d2eef062c27c0b025a8521f8360d1 224236 loki-doc_2.4.7.4-10_all.deb c68cf97fc92c17fb00d93631929bbbe69df7f99c 5326 loki_2.4.7.4-10_arm64.buildinfo b2f32a9ac45c783a72874a29360c8c2d26c06d19 33968 loki_2.4.7.4-10_arm64.deb Checksums-Sha256: 78338ba9b76202a44864111841b22a90f48bde0cf95ddee6675e926d691c537f 15336 loki-dbgsym_2.4.7.4-10_arm64.deb 25b20d037d13834a7d910860123242b8a42ad94628af180cdd78dfaad98d10c0 224236 loki-doc_2.4.7.4-10_all.deb fbf26eda9098a4d18a1410480717eb721f852df78b64ba06c527c0f09e4e6014 5326 loki_2.4.7.4-10_arm64.buildinfo faa4ab73c2330c3cbbe087f14c8f90dafc865cc2548165712f47ede4cff5f199 33968 loki_2.4.7.4-10_arm64.deb Files: 365daa3b100c2c7d466830117c970419 15336 debug optional loki-dbgsym_2.4.7.4-10_arm64.deb b9c0bcf4d108a73c5a4506d7d4084d04 224236 doc optional loki-doc_2.4.7.4-10_all.deb 6f9d7cbb7f3e8760d33719128eb98ad0 5326 science optional loki_2.4.7.4-10_arm64.buildinfo 7324c9b1dc68dbb6c77e8ce22cc6c822 33968 science optional loki_2.4.7.4-10_arm64.deb Thu May 9 23:44:47 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_17-35225.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/loki_2.4.7.4-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/loki_2.4.7.4-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/loki_2.4.7.4-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/b1/loki_2.4.7.4-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JPQqGfdJ/b2/loki_2.4.7.4-10_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.369s) 0.369s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 693ms CPU time consumed: 694ms Thu May 9 23:44:48 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 23:44:48 UTC 2024 I: loki from trixie built successfully and reproducibly on arm64. Thu May 9 23:44:50 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 23:44:50 UTC 2024 I: Submitting 8.0K b1/loki_2.4.7.4-10_arm64.buildinfo.asc Thu May 9 23:44:51 UTC 2024 I: Submitting 8.0K b2/loki_2.4.7.4-10_arm64.buildinfo.asc Thu May 9 23:44:51 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 23:44:51 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 23:44:51 UTC 2024 I: Removing signed loki_2.4.7.4-10_arm64.buildinfo.asc files: removed './b1/loki_2.4.7.4-10_arm64.buildinfo.asc' removed './b2/loki_2.4.7.4-10_arm64.buildinfo.asc'