Fri Apr 26 15:34:35 UTC 2024 I: starting to build libsmithwaterman/trixie/arm64 on jenkins on '2024-04-26 15:34' Fri Apr 26 15:34:35 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/38346/console.log Fri Apr 26 15:34:35 UTC 2024 I: Downloading source for trixie/libsmithwaterman=0.0+git20160702.2610e25-12 --2024-04-26 15:34:35-- http://deb.debian.org/debian/pool/main/libs/libsmithwaterman/libsmithwaterman_0.0%2bgit20160702.2610e25-12.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2337 (2.3K) [text/prs.lines.tag] Saving to: ‘libsmithwaterman_0.0+git20160702.2610e25-12.dsc’ 0K .. 100% 320M=0s 2024-04-26 15:34:35 (320 MB/s) - ‘libsmithwaterman_0.0+git20160702.2610e25-12.dsc’ saved [2337/2337] Fri Apr 26 15:34:36 UTC 2024 I: libsmithwaterman_0.0+git20160702.2610e25-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libsmithwaterman Binary: libsmithwaterman0, libsmithwaterman-dev, smithwaterman Architecture: any Version: 0.0+git20160702.2610e25-12 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/ekg/smithwaterman Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libsmithwaterman Vcs-Git: https://salsa.debian.org/med-team/libsmithwaterman.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev Package-List: libsmithwaterman-dev deb libdevel optional arch=any libsmithwaterman0 deb libs optional arch=any smithwaterman deb science optional arch=any Checksums-Sha1: 6b131fcd61fdcbd2d86ac7ea415983caf3a0e03e 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz 5426e9515a47f3fc38f4fb91999c784ea3ac9331 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz Checksums-Sha256: 6266f043c8a12cad8b1309f620c180fc422a1e9ee9df0163691652fa523f5bd3 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz d37cebbe58fa8ab750eff71dcf0ddafe63895ecc254e52c17eb34dcb746b681b 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz Files: 75f2ad1f67ed481fcd8b8a4178950e5c 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz 8ed7f78831dbbd00b613afb87724010a 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFmktsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtED/Q//bygXEryBJWTVDRou3puu6bHWXDrG8D2d 456e7RyCvUXJljUY8fvQF6mYsv7hC/MHuLlKkY5S4lmsA7AU9+FTZ0eyQFfqVBJG XIvAefc5KURSgeDsuVtmf5e2wehlfkl6ecWKJ6VMO67ZXogHkCT+MgHJrc3qc4rK 6Be1uhfhzIP/g8DwaoI+TxHPmyDVfyEjVDZXYYwchWwXlRtfeVopaRNAZPq5zyEl Lnc8sWjpwn9wRyxCwmZaJ9b9tvGiJMO54JgHu+LzHaKYwjFWRBhke7+7E9wykccj VonmSmyzshlt7FSXBU/2uD7awL3giOkzBKbJ2y6c4mFgd4jOF4bKhtQNn5ryLEnp CrOI1tHyN7ztVDFpM2bz1KedQHz4V0NppKm80hMUPIWr5RW52B0bpiMIb/ZNUZpb 8eYnH8qnb08zEbpaSlgoXo+FlTSlY7e4cPGkYPKTn9ti/hpaRStjSt6m7lxH+p9e 0RLswUVu4o0cmm6bl/fhcjby4fu0bC4b5f92CjLbIZYOgCTgEOr3P8TqLNKazgoU cGOVmVscgVFgURmKpep78nmhz9Dbcz7m0yQMxdo5q/Se5UbapSinsyk8KT81loQn BhsDznAKvvojZw1mXVNI5LO0R0QinfNiwrk5D8auMxn4NYw9bd9UVWyf9gHTMorf KsOR5zmnVWc= =r5ar -----END PGP SIGNATURE----- Fri Apr 26 15:34:36 UTC 2024 I: Checking whether the package is not for us Fri Apr 26 15:34:36 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Apr 26 15:34:36 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Apr 26 15:35:31 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 26 03:34:39 -12 2024 I: pbuilder-time-stamp: 1714145679 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libsmithwaterman_0.0+git20160702.2610e25-12.dsc] I: copying [./libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz] I: copying [./libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Oct 13 08:03:39 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libsmithwaterman_0.0+git20160702.2610e25-12.dsc: no acceptable signature found dpkg-source: info: extracting libsmithwaterman in libsmithwaterman-0.0+git20160702.2610e25 dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/195172/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='62f62f336dca4d798707886521ae9534' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='195172' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/pbuilderrc_BtLY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/b1 --logfile b1/build.log libsmithwaterman_0.0+git20160702.2610e25-12.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/195172/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19938 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 76.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1 arm64 1:5.45-2+b1 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-2+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.39.3-6 [90.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.106 [10.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b1 [4880 B] Get: 33 http://deb.debian.org/debian trixie/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b1 [4856 B] Fetched 18.7 MB in 0s (136 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19938 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_arm64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3+b1_arm64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_arm64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_arm64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libdisorder0:arm64. Preparing to unpack .../31-libdisorder0_0.0.2+git20130809.8062ee1-4+b1_arm64.deb ... Unpacking libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libdisorder-dev:arm64. Preparing to unpack .../32-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1_arm64.deb ... Unpacking libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:arm64 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libsmithwaterman_0.0+git20160702.2610e25-12_source.changes dpkg-buildpackage: info: source package libsmithwaterman dpkg-buildpackage: info: source version 0.0+git20160702.2610e25-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure -O--no-parallel ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 16912: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libsmithwaterman.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -O--no-parallel make -j1 make[1]: Entering directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' make all-am make[2]: Entering directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o smithwaterman.o smithwaterman.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libsmithwaterman_la-BandedSmithWaterman.lo `test -f 'BandedSmithWaterman.cpp' || echo './'`BandedSmithWaterman.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c BandedSmithWaterman.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-BandedSmithWaterman.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c BandedSmithWaterman.cpp -o libsmithwaterman_la-BandedSmithWaterman.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libsmithwaterman_la-IndelAllele.lo `test -f 'IndelAllele.cpp' || echo './'`IndelAllele.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c IndelAllele.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-IndelAllele.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c IndelAllele.cpp -o libsmithwaterman_la-IndelAllele.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libsmithwaterman_la-LeftAlign.lo `test -f 'LeftAlign.cpp' || echo './'`LeftAlign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c LeftAlign.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-LeftAlign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c LeftAlign.cpp -o libsmithwaterman_la-LeftAlign.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libsmithwaterman_la-Repeats.lo `test -f 'Repeats.cpp' || echo './'`Repeats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c Repeats.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-Repeats.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c Repeats.cpp -o libsmithwaterman_la-Repeats.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libsmithwaterman_la-SmithWatermanGotoh.lo `test -f 'SmithWatermanGotoh.cpp' || echo './'`SmithWatermanGotoh.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c SmithWatermanGotoh.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-SmithWatermanGotoh.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c SmithWatermanGotoh.cpp -o libsmithwaterman_la-SmithWatermanGotoh.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libsmithwaterman.la -rpath /usr/lib/aarch64-linux-gnu libsmithwaterman_la-BandedSmithWaterman.lo libsmithwaterman_la-IndelAllele.lo libsmithwaterman_la-LeftAlign.lo libsmithwaterman_la-Repeats.lo libsmithwaterman_la-SmithWatermanGotoh.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/13/crtbeginS.o .libs/libsmithwaterman_la-BandedSmithWaterman.o .libs/libsmithwaterman_la-IndelAllele.o .libs/libsmithwaterman_la-LeftAlign.o .libs/libsmithwaterman_la-Repeats.o .libs/libsmithwaterman_la-SmithWatermanGotoh.o -L/usr/lib/gcc/aarch64-linux-gnu/13 -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/13/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/13/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/13/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/13/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsmithwaterman.so.0 -o .libs/libsmithwaterman.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so.0" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so.0") libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so") libtool: link: ar cr .libs/libsmithwaterman.a libsmithwaterman_la-BandedSmithWaterman.o libsmithwaterman_la-IndelAllele.o libsmithwaterman_la-LeftAlign.o libsmithwaterman_la-Repeats.o libsmithwaterman_la-SmithWatermanGotoh.o libtool: link: ranlib .libs/libsmithwaterman.a libtool: link: ( cd ".libs" && rm -f "libsmithwaterman.la" && ln -s "../libsmithwaterman.la" "libsmithwaterman.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o smithwaterman smithwaterman.o libsmithwaterman.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/smithwaterman smithwaterman.o ./.libs/libsmithwaterman.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' dh_auto_test -O--no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel make -j1 install DESTDIR=/build/reproducible-path/libsmithwaterman-0.0\+git20160702.2610e25/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' make[2]: Entering directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' /usr/bin/mkdir -p '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsmithwaterman.la '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsmithwaterman.so.0.0.0 /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.so.0.0.0 libtool: install: (cd /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so.0 || { rm -f libsmithwaterman.so.0 && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so.0; }; }) libtool: install: (cd /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so || { rm -f libsmithwaterman.so && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so; }; }) libtool: install: /usr/bin/install -c .libs/libsmithwaterman.lai /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.la libtool: install: /usr/bin/install -c .libs/libsmithwaterman.a /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.a libtool: install: chmod 644 /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.a libtool: install: ranlib /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c smithwaterman '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin' libtool: warning: 'libsmithwaterman.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/smithwaterman /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin/smithwaterman /usr/bin/mkdir -p '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/include/smithwaterman' /usr/bin/install -c -m 644 BandedSmithWaterman.h IndelAllele.h LeftAlign.h Mosaik.h Repeats.h SmithWatermanGotoh.h convert.h '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/include/smithwaterman' /usr/bin/mkdir -p '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsmithwaterman.pc '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libsmithwaterman-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libsmithwaterman0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.a debian/libsmithwaterman-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.so debian/libsmithwaterman-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.so.0 debian/libsmithwaterman0/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/aarch64-linux-gnu/libsmithwaterman.so.0.0.0 debian/libsmithwaterman0/usr/lib/aarch64-linux-gnu PKGDEV=libsmithwaterman-dev PKGSHL=libsmithwaterman0 install -d -m 755 debian/libsmithwaterman-dev/usr/include mv debian/tmp/usr/include/smithwaterman debian/libsmithwaterman-dev/usr/include install -d -m 755 debian/libsmithwaterman-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsmithwaterman-dev/usr/lib/aarch64-linux-gnu/pkgconfig find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/libsmithwaterman-0.0+git20160702.2610e25' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dpkg-shlibdeps: warning: symbol shannon_H used by debian/libsmithwaterman0/usr/lib/aarch64-linux-gnu/libsmithwaterman.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/smithwaterman/usr/bin/smithwaterman was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libsmithwaterman-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'libsmithwaterman0' in '../libsmithwaterman0_0.0+git20160702.2610e25-12_arm64.deb'. dpkg-deb: building package 'libsmithwaterman-dev' in '../libsmithwaterman-dev_0.0+git20160702.2610e25-12_arm64.deb'. dpkg-deb: building package 'libsmithwaterman0-dbgsym' in '../libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_arm64.deb'. dpkg-deb: building package 'smithwaterman' in '../smithwaterman_0.0+git20160702.2610e25-12_arm64.deb'. dpkg-deb: building package 'smithwaterman-dbgsym' in '../smithwaterman-dbgsym_0.0+git20160702.2610e25-12_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo dpkg-genchanges --build=binary -O../libsmithwaterman_0.0+git20160702.2610e25-12_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/195172 and its subdirectories I: Current time: Fri Apr 26 03:35:30 -12 2024 I: pbuilder-time-stamp: 1714145730 Fri Apr 26 15:35:32 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Apr 26 15:35:32 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Apr 26 15:36:31 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Apr 26 15:36:32 UTC 2024 I: libsmithwaterman_0.0+git20160702.2610e25-12_arm64.changes: Format: 1.8 Date: Wed, 13 Oct 2021 10:01:23 +0200 Source: libsmithwaterman Binary: libsmithwaterman-dev libsmithwaterman0 libsmithwaterman0-dbgsym smithwaterman smithwaterman-dbgsym Architecture: arm64 Version: 0.0+git20160702.2610e25-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libsmithwaterman-dev - determine similar regions between two strings or genomic sequence libsmithwaterman0 - determine similar regions between two strings or genomic sequence smithwaterman - determine similar regions between two strings or genomic sequence Closes: 984207 Changes: libsmithwaterman (0.0+git20160702.2610e25-12) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + libsmithwaterman-dev, libsmithwaterman0: Add Multi-Arch: same. * Drop symbols file to reduce maintenance burden Closes: #984207 Checksums-Sha1: f3f26aabb8a2b68dcbf5b28c13bca3c9af49faa9 37916 libsmithwaterman-dev_0.0+git20160702.2610e25-12_arm64.deb 4206f4d6bf89f53e739b97c22f3b87f99f0e90b3 357744 libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_arm64.deb 6f779dad694188b50756edbfb321061914a2339d 32268 libsmithwaterman0_0.0+git20160702.2610e25-12_arm64.deb ba7f3e4caf074695ad46184707c45b1dbdd0013b 6959 libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo eebd8092eeddac9a3ba4832d0f0d0ade3eb212e3 60172 smithwaterman-dbgsym_0.0+git20160702.2610e25-12_arm64.deb c08e587dafd84f1dc760203a92c7c482c8b978b8 12148 smithwaterman_0.0+git20160702.2610e25-12_arm64.deb Checksums-Sha256: 718f62a184c050131f364d84d315eaf4cf2176b3329c62058279f776a323cd03 37916 libsmithwaterman-dev_0.0+git20160702.2610e25-12_arm64.deb ed93c6810e043e266c57b37354b115438a14afe11f7d49b44f5c18e09dd5d6ae 357744 libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_arm64.deb 6f4102e2fea6cd86e7ff155c9211ed88605f0a609fbde8d94ca5c256bca4068d 32268 libsmithwaterman0_0.0+git20160702.2610e25-12_arm64.deb c0897b1071696ab1275c520654b73c878b2790e202749aaa726be84a4dbea289 6959 libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo 2c622fb584d96f19308db7f4007f0ed920de5a3cf5ef5a4aa4e7145f7d66b3cf 60172 smithwaterman-dbgsym_0.0+git20160702.2610e25-12_arm64.deb bb86d007de7516318fa255bf26bd6201dbcc0751717f41213343627a8d9929b9 12148 smithwaterman_0.0+git20160702.2610e25-12_arm64.deb Files: 4c7b526c2b30e784293ca7f42f0454bb 37916 libdevel optional libsmithwaterman-dev_0.0+git20160702.2610e25-12_arm64.deb db1250a7fcce4857edca23c8837240b9 357744 debug optional libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_arm64.deb b6c2574d78397861a35c587ee02b64c7 32268 libs optional libsmithwaterman0_0.0+git20160702.2610e25-12_arm64.deb df4a0b2a4e6e889f8d4600db3ce6699f 6959 science optional libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo 776b9c37bdfdc4ad7a2b258ca70a3799 60172 debug optional smithwaterman-dbgsym_0.0+git20160702.2610e25-12_arm64.deb 42ba85386e357e6a411d79feaa85abb8 12148 science optional smithwaterman_0.0+git20160702.2610e25-12_arm64.deb Fri Apr 26 15:36:33 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-38346.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/libsmithwaterman_0.0+git20160702.2610e25-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/libsmithwaterman_0.0+git20160702.2610e25-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/libsmithwaterman_0.0+git20160702.2610e25-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/b1/libsmithwaterman_0.0+git20160702.2610e25-12_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1Q7Q5cZA/b2/libsmithwaterman_0.0+git20160702.2610e25-12_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.352s) 0.352s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 687ms CPU time consumed: 687ms Fri Apr 26 15:36:34 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 26 15:36:34 UTC 2024 I: libsmithwaterman from trixie built successfully and reproducibly on arm64. Fri Apr 26 15:36:36 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Apr 26 15:36:36 UTC 2024 I: Submitting 8.0K b1/libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo.asc Fri Apr 26 15:36:38 UTC 2024 I: Submitting 8.0K b2/libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo.asc Fri Apr 26 15:36:40 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 26 15:36:40 UTC 2024 I: Done submitting .buildinfo files. Fri Apr 26 15:36:40 UTC 2024 I: Removing signed libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo.asc files: removed './b1/libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo.asc' removed './b2/libsmithwaterman_0.0+git20160702.2610e25-12_arm64.buildinfo.asc'