Thu May 2 07:16:41 UTC 2024 I: starting to build libpll/trixie/arm64 on jenkins on '2024-05-02 07:16' Thu May 2 07:16:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/32979/console.log Thu May 2 07:16:41 UTC 2024 I: Downloading source for trixie/libpll=0.3.2-5 --2024-05-02 07:16:41-- http://deb.debian.org/debian/pool/main/libp/libpll/libpll_0.3.2-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2086 (2.0K) [text/prs.lines.tag] Saving to: ‘libpll_0.3.2-5.dsc’ 0K .. 100% 158M=0s 2024-05-02 07:16:41 (158 MB/s) - ‘libpll_0.3.2-5.dsc’ saved [2086/2086] Thu May 2 07:16:41 UTC 2024 I: libpll_0.3.2-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libpll Binary: libpll0, libpll-dev Architecture: any Version: 0.3.2-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.libpll.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libpll Vcs-Git: https://salsa.debian.org/med-team/libpll.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive Package-List: libpll-dev deb libdevel optional arch=any libpll0 deb libs optional arch=any Checksums-Sha1: fac5db76dbc6a9582d9342f078ae7af925830ea8 2237460 libpll_0.3.2.orig.tar.gz 46e15a26db3a6fe9148818d73d711117507d6f19 238476 libpll_0.3.2-5.debian.tar.xz Checksums-Sha256: 45107d59d87be921c522478bb3688beee60dc79154e0b4a183af01122c597132 2237460 libpll_0.3.2.orig.tar.gz a19f40d2c2b0de7b33a6f56970bf5e64c6df49a57526f4208439454b449ed112 238476 libpll_0.3.2-5.debian.tar.xz Files: ee62af658af8aaf9c68af75e7714e055 2237460 libpll_0.3.2.orig.tar.gz 271e25f36e33993310e95fa6e09fb389 238476 libpll_0.3.2-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV7HmMWHGVtb2xsaWVy QGVtbHdrczk5OS5ldQAKCRB5PPZ+jw0R2hevD/wLeNC5d4nbFIPsTLXK+B4SbYe1 zefSqtqCbg2UDSyPMinupQ0ojGWMC4GPyZ2lXZZIH63efMLN5Hl7S1tzckEZ3SCn smbqXdqNgKGq0xhjxKdYB+fux9yKUINWTELsnidgRVswhoI1sbaUvPVQsQqWDvyi ocpq5vfaM+FVS1MfZGIHzrBZmsji8LOHutKSFezQX55OPhle0qOTgEHIXDGvCDEG SPhTeFykm8IByYxUscPucKHT0PdNq02M6mH5HLbc+H+YuxHXNgnGLrNUhWVSEj+I gXYMgcOcpbBigl/GHkF4cF7RH/LITg6TBFfZgm+FG6GiyqNw1xA/sb++qBOsinDX opZfEvGTYqM4IAm6SxbHHOoFM1KPigKByD6hT/KzDPkELWJsUeBa3SiB+xnhbNmf dUir04mcup5QDapbtIRAFr8X8qPtjVktbxjSPclZxk+PvogigrSzSw1dHhXTNGgw LbKzKdCLlwhS4VfJ0xtD4HFbngWksKVOyxOh8MnfDo7CJWaiRs2qGqwSmg5wz8c7 sExIG6Y9AjJFirQ1kGMQTaf9dcR0TCi7OmtOA8dZIWklz/4qRPNs4ujV3v8hkwgd oTHXuxZDkK2JgxL0HGyD1lzyb1dVYo/0ljvTUJFdyyllvJ9doZegdvqjA8KXsChG zSnJmsX/hzR2a2ksdg== =wcMj -----END PGP SIGNATURE----- Thu May 2 07:16:41 UTC 2024 I: Checking whether the package is not for us Thu May 2 07:16:41 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu May 2 07:16:41 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu May 2 07:18:21 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 1 19:16:44 -12 2024 I: pbuilder-time-stamp: 1714634204 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpll_0.3.2-5.dsc] I: copying [./libpll_0.3.2.orig.tar.gz] I: copying [./libpll_0.3.2-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 14 15:25:23 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libpll_0.3.2-5.dsc: no acceptable signature found dpkg-source: info: extracting libpll in libpll-0.3.2 dpkg-source: info: unpacking libpll_0.3.2.orig.tar.gz dpkg-source: info: unpacking libpll_0.3.2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix-parallel-build.patch dpkg-source: info: applying pass_cflags_during_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/205037/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='92cd3a7280f846aa835c357cf4ae2f76' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='205037' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/pbuilderrc_Qq33 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/b1 --logfile b1/build.log libpll_0.3.2-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 23 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/205037/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19915 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libfl-dev libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 21.0 MB of archives. After unpacking 86.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 flex arm64 2.6.4-8.2+b2 [413 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 bison arm64 2:3.8.2+dfsg-1+b1 [1152 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.106 [10.9 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Fetched 21.0 MB in 0s (95.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19915 files and directories currently installed.) Preparing to unpack .../00-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package m4. Preparing to unpack .../01-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../02-flex_2.6.4-8.2+b2_arm64.deb ... Unpacking flex (2.6.4-8.2+b2) ... 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Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up autoconf-archive (20220903-3) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up d-shlibs (0.106) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up flex (2.6.4-8.2+b2) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpll_0.3.2-5_source.changes dpkg-buildpackage: info: source package libpll dpkg-buildpackage: info: source version 0.3.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from libpll-0.3.2/debian/source/options: --extend-diff-ignore=man/libpll.3 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: installing 'm4/libtool.m4' from '/usr/share/aclocal/libtool.m4' aclocal: installing 'm4/ltoptions.m4' from '/usr/share/aclocal/ltoptions.m4' aclocal: installing 'm4/ltsugar.m4' from '/usr/share/aclocal/ltsugar.m4' aclocal: installing 'm4/ltversion.m4' from '/usr/share/aclocal/ltversion.m4' aclocal: installing 'm4/lt~obsolete.m4' from '/usr/share/aclocal/lt~obsolete.m4' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:18: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:18: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:19: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:19: the top level configure.ac:17: installing './compile' configure.ac:11: installing './config.guess' configure.ac:11: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am:3: warning: shell dpkg-buildflags --get CFLAGS: non-POSIX variable name src/Makefile.am:3: (probably a GNU make extension) src/Makefile.am: installing './depcomp' configure.ac: installing './ylwrap' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' dh_auto_configure -- --disable-sse --disable-avx --disable-avx2 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-sse --disable-avx --disable-avx2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for bison... bison -y checking for exp in -lm... yes checking for assert.h... yes checking for math.h... yes checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for ctype.h... yes checking for x86intrin.h... no checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for asprintf... yes checking for memcpy... yes checking for memset... yes checking for posix_memalign... yes checking for ps2pdf... no configure: WARNING: *** ps2pdf is required to build a PDF version of the manual checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands libpll 0.3.2 Target: linux-gnu aarch64 Compiler: gcc CFLAGS: -g -Wdate-time -D_FORTIFY_SOURCE=2 LIBS: -lm -Wl,-z,relro -Wl,-z,now Continue with 'make' command make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' make all-recursive make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making all in src make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` /bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 102 | %error-verbose | ^~~~~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 102 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:104.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 104 | %destructor { pll_rtree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:105.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 105 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:106.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 106 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:107.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 107 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 159 | %error-verbose | ^~~~~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 159 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 161 | %destructor { pll_utree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:162.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 162 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:163.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 163 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 164 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] /build/reproducible-path/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_rtree.h updating parse_utree.h make all-am make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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-ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -o libpll_la-core_derivatives.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -fPIC -DPIC -o .libs/libpll_la-parse_utree.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -fPIC -DPIC -o .libs/libpll_la-stepwise.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -fPIC -DPIC -o .libs/libpll_la-random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -fPIC -DPIC -o .libs/libpll_la-phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -fPIC -DPIC -o .libs/libpll_la-hardware.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -fPIC -DPIC -o .libs/libpll_la-lex_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -o libpll_la-fast_parsimony.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -o libpll_la-random.o >/dev/null 2>&1 lex_utree.l: In function 'pll_utree_lex': lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); | ^ lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -o libpll_la-hardware.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -o libpll_la-stepwise.o >/dev/null 2>&1 lex_rtree.l: In function 'pll_rtree_lex': lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); | ^ lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/aarch64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o -lm -g -O2 -fstack-protector-strong -mbranch-protection=standard -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0") libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so") libtool: link: ar cr .libs/libpll.a libpll_la-fasta.o libpll_la-gamma.o libpll_la-likelihood.o libpll_la-list.o libpll_la-maps.o libpll_la-models.o libpll_la-pll.o libpll_la-output.o libpll_la-utree.o libpll_la-rtree.o libpll_la-derivatives.o libpll_la-partials.o libpll_la-compress.o libpll_la-utree_moves.o libpll_la-utree_svg.o libpll_la-parsimony.o libpll_la-core_derivatives.o libpll_la-core_partials.o libpll_la-core_pmatrix.o libpll_la-core_likelihood.o libpll_la-parse_utree.o libpll_la-parse_rtree.o libpll_la-lex_utree.o libpll_la-lex_rtree.o libpll_la-fast_parsimony.o libpll_la-stepwise.o libpll_la-random.o libpll_la-phylip.o libpll_la-hardware.o libtool: link: ranlib .libs/libpll.a libtool: link: ( cd ".libs" && rm -f "libpll.la" && ln -s "../libpll.la" "libpll.la" ) make[4]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making all in man make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making all in examples make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making check in src make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make check-am make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making check in man make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making check in examples make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libpll-0.3.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making install in src make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make install-am make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libpll.la '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so.0.0.0 libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; }) libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; }) libtool: install: /usr/bin/install -c .libs/libpll.lai /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.la libtool: install: /usr/bin/install -c .libs/libpll.a /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a libtool: install: chmod 644 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a libtool: install: ranlib /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/include/libpll' /usr/bin/install -c -m 644 pll.h '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/include/libpll' make[4]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making install in man make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 libpll.3 '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/man/man3' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making install in examples make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/install -c -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/install -c -m 644 lg4/lg4.c lg4/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/install -c -m 644 lg4/data/example.fas lg4/data/example.tree '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/install -c -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/install -c -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/install -c -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/install -c -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/install -c -m 644 newton/newton.c newton/Makefile newton/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/install -c -m 644 parsimony/npr-pars.c parsimony/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/install -c -m 644 partial-traversal/partial.c partial-traversal/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/install -c -m 644 protein-list/protein-list.c protein-list/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/install -c -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/install -c -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/install -c -m 644 stepwise/stepwise.c stepwise/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' /usr/bin/install -c -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/ld64-1-dev// \ --override s/ld-kfreebsd-x86-64-1-dev// \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpll-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libpll0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpll.a debian/libpll-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so debian/libpll-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so.0 debian/libpll0/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpll.so.0.0.0 debian/libpll0/usr/lib/aarch64-linux-gnu PKGDEV=libpll-dev PKGSHL=libpll0 install -d -m 755 debian/libpll-dev/usr/include mv debian/tmp/usr/include/libpll debian/libpll-dev/usr/include make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' sed -i 's/conjuction/conjunction/' man/libpll.3 dh_installman make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' find debian/tmp -type f \( -name "*.la" -o -name "libpll.3" \) | xargs rm -rf find debian/tmp -name examples | xargs rm -rf find debian/libpll-dev/usr/share/doc/libpll-dev/examples/ -name .gitignore | xargs rm -rf dh_missing make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libpll-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-5_arm64.deb'. dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-5_arm64.deb'. dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libpll_0.3.2-5_arm64.buildinfo dpkg-genchanges --build=binary -O../libpll_0.3.2-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from libpll-0.3.2/debian/source/options: --extend-diff-ignore=man/libpll.3 dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/205037 and its subdirectories I: Current time: Wed May 1 19:18:20 -12 2024 I: pbuilder-time-stamp: 1714634300 Thu May 2 07:18:22 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu May 2 07:18:22 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu May 2 07:19:24 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu May 2 07:19:25 UTC 2024 I: libpll_0.3.2-5_arm64.changes: Format: 1.8 Date: Tue, 12 Dec 2023 19:59:18 +0700 Source: libpll Binary: libpll-dev libpll0 libpll0-dbgsym Architecture: arm64 Version: 0.3.2-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: libpll-dev - Phylogenetic Likelihood Library (development) libpll0 - Phylogenetic Likelihood Library Closes: 1046603 1049759 Changes: libpll (0.3.2-5) unstable; urgency=medium . * Team upload. * Fix watchfile to detect new versions on github * Standards-Version: 4.6.2 (routine-update) * Apply multi-arch hints. * d/clean: Remove autogenerated files in src/ (Closes: #1046603) * d/source/options: Ignore modified manpage (Closes: #1049759) * d/libpll-dev.examples: Install examples folder * d/rules: Remove files from debian/tmp that do not get installed * d/tests/run-unit-test: Run tests for all supported python versions * d/patches: Pass CFLAGS during build Checksums-Sha1: 6e89c1c00cac379c00784636091fb953eb0bd6c8 167716 libpll-dev_0.3.2-5_arm64.deb dfedaeba0d509d211af7133da1e98d98597b3d36 232480 libpll0-dbgsym_0.3.2-5_arm64.deb 53993c8035b1c486b65e49792bc0b741e99da3f4 118428 libpll0_0.3.2-5_arm64.deb 08a74b5fba34e9ca1caadf8395533f53183c655f 5911 libpll_0.3.2-5_arm64.buildinfo Checksums-Sha256: fce8ccc17c6199df35a70d3078f5b16a58c85785f3c83ac4952745b2af15aa38 167716 libpll-dev_0.3.2-5_arm64.deb 7f22ef82c639da6457896cb8f3459143f90d9e913a01d3645ee5717c7f44f4ce 232480 libpll0-dbgsym_0.3.2-5_arm64.deb 64b876994b2d7a358f3fb914fec7135df107d0f0a1ca9630866742427b78d648 118428 libpll0_0.3.2-5_arm64.deb 975de27d7bd2659923bbd366c71a12d39cfa557fdac2d6243bead3efa40641c1 5911 libpll_0.3.2-5_arm64.buildinfo Files: d35480bf4510a46b05ea56e5d609ea43 167716 libdevel optional libpll-dev_0.3.2-5_arm64.deb 2c2e229b1b7fdf499ef85f5651edc296 232480 debug optional libpll0-dbgsym_0.3.2-5_arm64.deb 1e802c49d7ca747d0ce0b4dd91c75b49 118428 libs optional libpll0_0.3.2-5_arm64.deb 1cdf877cb1b8f8d280cba91f512a7911 5911 science optional libpll_0.3.2-5_arm64.buildinfo Thu May 2 07:19:26 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_24-32979.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/libpll_0.3.2-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/libpll_0.3.2-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/libpll_0.3.2-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/b1/libpll_0.3.2-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7wWMydgw/b2/libpll_0.3.2-5_arm64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.213s) 0.136s 7 calls diff 0.059s 6 calls xz 0.008s 3 calls cmp 0.008s 3 calls cmp (external) 0.001s 11 calls cmp (internal) ## compare_files (cumulative) (total time: 1.612s) 0.427s 1 call abc.DotChangesFile 0.401s 1 call abc.DebFile 0.372s 2 calls abc.XzFile 0.250s 1 call abc.DebDataTarFile 0.098s 2 calls abc.TextFile 0.055s 1 call abc.TarFile 0.009s 1 call abc.Md5sumsFile ## container_extract (total time: 0.101s) 0.060s 6 calls diffoscope.comparators.xz.XzContainer 0.033s 124 calls diffoscope.comparators.deb.DebTarContainer 0.005s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.004s) 0.004s 5 calls linediff ## has_same_content_as (total time: 0.011s) 0.006s 3 calls abc.DebFile 0.003s 1 call abc.DebDataTarFile 0.000s 3 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.XzFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.TarFile 0.000s 1 call abc.DotChangesFile ## main (total time: 0.863s) 0.857s 2 calls outputs 0.006s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.046s) 0.045s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 0.095s) 0.052s 546 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile 0.015s 260 calls diffoscope.comparators.utils.archive.ArchiveMember 0.006s 162 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.062s) 0.062s 14 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 1.223s CPU time consumed: 1.290s Thu May 2 07:19:28 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Thu May 2 07:19:28 UTC 2024 E: libpll failed to build reproducibly in trixie on arm64. Thu May 2 07:19:30 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 2 07:19:30 UTC 2024 I: Submitting 8.0K b1/libpll_0.3.2-5_arm64.buildinfo.asc Thu May 2 07:19:31 UTC 2024 I: Submitting 8.0K b2/libpll_0.3.2-5_arm64.buildinfo.asc Thu May 2 07:19:32 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 2 07:19:32 UTC 2024 I: Done submitting .buildinfo files. Thu May 2 07:19:32 UTC 2024 I: Removing signed libpll_0.3.2-5_arm64.buildinfo.asc files: removed './b1/libpll_0.3.2-5_arm64.buildinfo.asc' removed './b2/libpll_0.3.2-5_arm64.buildinfo.asc'