Sat May 4 09:05:35 UTC 2024 I: starting to build libbpp-raa/trixie/arm64 on jenkins on '2024-05-04 09:05' Sat May 4 09:05:35 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/33590/console.log Sat May 4 09:05:35 UTC 2024 I: Downloading source for trixie/libbpp-raa=2.4.1-8 --2024-05-04 09:05:35-- http://deb.debian.org/debian/pool/main/libb/libbpp-raa/libbpp-raa_2.4.1-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2146 (2.1K) [text/prs.lines.tag] Saving to: ‘libbpp-raa_2.4.1-8.dsc’ 0K .. 100% 319M=0s 2024-05-04 09:05:35 (319 MB/s) - ‘libbpp-raa_2.4.1-8.dsc’ saved [2146/2146] Sat May 4 09:05:35 UTC 2024 I: libbpp-raa_2.4.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-raa Binary: libbpp-raa-dev, libbpp-raa4t64 Architecture: any Version: 2.4.1-8 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-raa Vcs-Git: https://salsa.debian.org/med-team/libbpp-raa.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev Package-List: libbpp-raa-dev deb libdevel optional arch=any libbpp-raa4t64 deb libs optional arch=any Checksums-Sha1: 31eefa01d441b72db441e1f5e1fb0e07acc24717 83211 libbpp-raa_2.4.1.orig.tar.gz 98a1eab89f73e551314e509627117f38c304df5a 12224 libbpp-raa_2.4.1-8.debian.tar.xz Checksums-Sha256: 21ed87b5c0c80f5b1632493127b30a77ae92ac0853985c048f31bed5fd0fb301 83211 libbpp-raa_2.4.1.orig.tar.gz 7e826208c52c14f20af119a7d02c6b246a00a1341f5475af723ba64f49d70622 12224 libbpp-raa_2.4.1-8.debian.tar.xz Files: 6ccf1fcd43852bb6d20959b0308fb754 83211 libbpp-raa_2.4.1.orig.tar.gz c12c0837bef3cd395749e84547307564 12224 libbpp-raa_2.4.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYBu1gACgkQPCZ2P2xn 5uIqZw/9HfKNXbNpx4C5pf/BulFUKJVa+6dPHWLQ5SuVMRytqiquOwCQTlR6iLfx pMnjYaG1fVravAWlbRq12cI+5sxLINxdmPUGhjs6mz17uhHkARsE8Ql9h+SFvyG2 dlOkSCCYj/PrHBNfRlMei+gnurUJVXf0VhY9wgnd+jqCcnar13wgnh+UFxPsFW/O jJ1JsbeL5XxMYW2X5uhMvfptpX/2S/6Natj2Dlt5QxhKMi8MAP0GG9oNdnT7ZMUq ueW7nyk7ybNUfs0B6soaUnRLLw1mzOFNe80UUix6xYcEgAXvHz18BBD/IQIeYESn 5hfNcqBWu6qy73RsSh0khIjgP+AUAjsXxrfZG6CZAc4P9sPsZFsj6BMZPw9LnARR RkG8kSDCQ2ONbE7VXBWbEd2ZLpc5ovRSdb0IzCr1PuCtA94AOaGpD4P9yaILpmsc K822sLJbFU5YSJWfGFFk7v7qVqnT2E7FUNC7MinwLIM3KUcse+2rDjmxKPESiFyN j3WdEbOJKu9/ranh/v/v790G2KMrfvZ8MHtNxwieO/GGN3pLASlAtjd+JoLdW5nr hXlcEOJgMCDjSFxVv6H+WhVLZhCrEozmxDqfLkZMeZXQ6qndhkbb0As7rlx8bo57 qiW0OG/KI/ef6xSLRVIzE/wZUTDolwesgCHorV3+UocmCnRrtCE= =sLM9 -----END PGP SIGNATURE----- Sat May 4 09:05:35 UTC 2024 I: Checking whether the package is not for us Sat May 4 09:05:35 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Sat May 4 09:05:35 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Sat May 4 09:06:06 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 6 03:28:37 -12 2025 I: pbuilder-time-stamp: 1749223717 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-raa_2.4.1-8.dsc] I: copying [./libbpp-raa_2.4.1.orig.tar.gz] I: copying [./libbpp-raa_2.4.1-8.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 17:58:48 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-raa_2.4.1-8.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-raa in libbpp-raa-2.4.1 dpkg-source: info: unpacking libbpp-raa_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-raa_2.4.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1160888/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e17cd352a38c40038337ce85f94ef7e7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1160888' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/pbuilderrc_E8KW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/b1 --logfile b1/build.log libbpp-raa_2.4.1-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-20-cloud-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 14:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1160888/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19736 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 37.1 MB of archives. After unpacking 155 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.2-2 [321 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.0-2.4 [20.1 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.7.1-3 [412 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-1.1 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.29.2-2 [9059 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 d-shlibs all 0.106 [10.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 50 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libbpp-core4t64 arm64 2.4.1-12 [540 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libbpp-core-dev arm64 2.4.1-12 [933 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libbpp-seq12t64 arm64 2.4.1-12 [439 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libbpp-seq-dev arm64 2.4.1-12 [721 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] Fetched 37.1 MB in 0s (178 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19736 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3+b1_arm64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbpp-raa-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-raa_2.4.1-8_source.changes dpkg-buildpackage: info: source package libbpp-raa dpkg-buildpackage: info: source version 2.4.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 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/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp [ 50%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c [ 55%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o [ 61%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o [ 66%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ [ 72%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c [ 77%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c [ 83%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c [ 88%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c [ 94%] Linking CXX static library libbpp-raa.a cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-raa-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-raa.a "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o" /usr/bin/ranlib libbpp-raa.a make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' [ 94%] Built target bpp-raa-static [100%] Linking CXX shared library libbpp-raa.so cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-raa.so.4 -o libbpp-raa.so.4.0.0 "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o" /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-raa.so.4.0.0 libbpp-raa.so.4 libbpp-raa.so make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' [100%] Built target bpp-raa-shared make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/libbpp-raa-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-config.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-config-version.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.a -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4.0.0 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/parser.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSpeciesTree.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSeqAttributes.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaList.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA_acnuc.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-targets.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbpp-raa4t64/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.a debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4 debian/libbpp-raa4t64/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4.0.0 debian/libbpp-raa4t64/usr/lib/aarch64-linux-gnu PKGDEV=libbpp-raa-dev PKGSHL=libbpp-raa4t64 install -d -m 755 debian/libbpp-raa-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-raa-dev/usr/include install -d -m 755 debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-raa-dev' in '../libbpp-raa-dev_2.4.1-8_arm64.deb'. dpkg-deb: building package 'libbpp-raa4t64' in '../libbpp-raa4t64_2.4.1-8_arm64.deb'. dpkg-deb: building package 'libbpp-raa4t64-dbgsym' in '../libbpp-raa4t64-dbgsym_2.4.1-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-raa_2.4.1-8_arm64.buildinfo dpkg-genchanges --build=binary -O../libbpp-raa_2.4.1-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1160888 and its subdirectories I: Current time: Fri Jun 6 03:29:05 -12 2025 I: pbuilder-time-stamp: 1749223745 Sat May 4 09:06:07 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat May 4 09:06:07 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat May 4 09:06:44 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat May 4 09:06:45 UTC 2024 I: libbpp-raa_2.4.1-8_arm64.changes: Format: 1.8 Date: Mon, 25 Mar 2024 16:12:11 +0100 Source: libbpp-raa Binary: libbpp-raa-dev libbpp-raa4t64 libbpp-raa4t64-dbgsym Architecture: arm64 Version: 2.4.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libbpp-raa-dev - Bio++ Remote Acnuc Access library development files libbpp-raa4t64 - Bio++ Remote Acnuc Access library Changes: libbpp-raa (2.4.1-8) unstable; urgency=medium . * Team upload. * d/patches/unforce-cxxflags.patch: merge with upstreams flags especially "-std=c++11"; and forward this patch to them. * d/control: rely on substvars for more dependencies. * Silence some false-positive Lintian warnings and errors related to the t64 transition. * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 1a4e74c18766117fbbf7fea9c32afd05775b8c79 66888 libbpp-raa-dev_2.4.1-8_arm64.deb 903fc262a12244c70d7ed74ca19962927ad78576 234980 libbpp-raa4t64-dbgsym_2.4.1-8_arm64.deb f92d09853bce35ff8b8872ad3815426d1ad64822 50016 libbpp-raa4t64_2.4.1-8_arm64.deb edf5b89dac909c429b1425f57625da079220f046 6806 libbpp-raa_2.4.1-8_arm64.buildinfo Checksums-Sha256: 9bab39ed380f8273cf17b7b5a92c59d49c6638a575647cdb6f3f716234a6afda 66888 libbpp-raa-dev_2.4.1-8_arm64.deb 1d76df374ec117eb1b85b7cb179265ae8f32616c99f694dc6c5aeb5e3d2f8b15 234980 libbpp-raa4t64-dbgsym_2.4.1-8_arm64.deb 115a30864c75912633e79be0eb8e6a9891cf04152a27064223b89fa8bc8e5322 50016 libbpp-raa4t64_2.4.1-8_arm64.deb 0823a9011c1c1aa4c7b660dc3ce9583f63af53da6bed8cac62d1b3fc9d4b75ea 6806 libbpp-raa_2.4.1-8_arm64.buildinfo Files: e93f67e91ec8d2f1c99c435e091505a5 66888 libdevel optional libbpp-raa-dev_2.4.1-8_arm64.deb d715951f037d9133fb2ef93c82db0e98 234980 debug optional libbpp-raa4t64-dbgsym_2.4.1-8_arm64.deb f62079ed20c0ca32c773e4bfa7b64d6a 50016 libs optional libbpp-raa4t64_2.4.1-8_arm64.deb 64118e19adfe0fec83e2980b0f3687e4 6806 science optional libbpp-raa_2.4.1-8_arm64.buildinfo Sat May 4 09:06:46 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-33590.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/libbpp-raa_2.4.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/libbpp-raa_2.4.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/libbpp-raa_2.4.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/b1/libbpp-raa_2.4.1-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5w3yv77Q/b2/libbpp-raa_2.4.1-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.382s) 0.382s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.489s CPU time consumed: 754ms Sat May 4 09:06:49 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 4 09:06:49 UTC 2024 I: libbpp-raa from trixie built successfully and reproducibly on arm64. Sat May 4 09:06:50 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 4 09:06:50 UTC 2024 I: Submitting 8.0K b1/libbpp-raa_2.4.1-8_arm64.buildinfo.asc Sat May 4 09:06:51 UTC 2024 I: Submitting 8.0K b2/libbpp-raa_2.4.1-8_arm64.buildinfo.asc Sat May 4 09:06:52 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 4 09:06:52 UTC 2024 I: Done submitting .buildinfo files. Sat May 4 09:06:52 UTC 2024 I: Removing signed libbpp-raa_2.4.1-8_arm64.buildinfo.asc files: removed './b1/libbpp-raa_2.4.1-8_arm64.buildinfo.asc' removed './b2/libbpp-raa_2.4.1-8_arm64.buildinfo.asc'