Thu May 9 22:10:19 UTC 2024 I: starting to build libbio-featureio-perl/trixie/arm64 on jenkins on '2024-05-09 22:10' Thu May 9 22:10:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/34520/console.log Thu May 9 22:10:19 UTC 2024 I: Downloading source for trixie/libbio-featureio-perl=1.6.905-2 --2024-05-09 22:10:19-- http://deb.debian.org/debian/pool/main/libb/libbio-featureio-perl/libbio-featureio-perl_1.6.905-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2325 (2.3K) [text/prs.lines.tag] Saving to: ‘libbio-featureio-perl_1.6.905-2.dsc’ 0K .. 100% 252M=0s 2024-05-09 22:10:19 (252 MB/s) - ‘libbio-featureio-perl_1.6.905-2.dsc’ saved [2325/2325] Thu May 9 22:10:19 UTC 2024 I: libbio-featureio-perl_1.6.905-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: all Version: 1.6.905-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-FeatureIO Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-featureio-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-featureio-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 12) Build-Depends-Indep: libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl Package-List: libbio-featureio-perl deb perl optional arch=all Checksums-Sha1: 13fea9d01472288a281cc7251951ee068fb283db 54906 libbio-featureio-perl_1.6.905.orig.tar.gz 45a1b10d1dfc0b8c391e9ecf7d923428eb8b5da1 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz Checksums-Sha256: 322e5757b374f2fb90b8f20bdbdc75631f5cb4d122f81a4d35c3a177cf950c7a 54906 libbio-featureio-perl_1.6.905.orig.tar.gz bc047910dd0709363552e88f6323aaaf09be2aba7401fe943b1eba76b94a687f 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz Files: 7e455995c0a9cff706f43b1412dfdb9c 54906 libbio-featureio-perl_1.6.905.orig.tar.gz 5cd2dcb01402b65d4303d5385f2d9954 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4cJYwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGyKQ//YgapUIltkS+bplEEt9pkn5R+g6hK7zZY H27PhfFKt6rpYgXXu6BYvJzAVfOZ30SFdqVfrEe/tPj5dtumcxtPKONNUZCasa/p zpEIjKa0MMoO7BdqOpSPh0HaEz1jB6f6bYi/YO1fWq3M3yeRP28F0AXTKgByLeDa zeRwiK3ppthEAxeifXNuF0emGw30XZjsR/I3dUeTKMavx/rlFWPrQwze/EScAodi DeHUcJVCf6++wmqCUjSNKQsHcOUvY4g5FnAAT3FCwE11VyyeYadxEoXyMf6vOqh4 jnrf+blr5hvRiIQy7GZWVrievniro44CZ+XLQlgVY6SfRa2kZ3SfCCrJaKJ03M7p GDiW6U2uEtuVXuMS+i0Js2I5huujFKdzlHf/jPmp3lCe7+KQP9PTKQssca7oIdeo dhTcD3rIRmbBEFnW5BLVLxgMto+9XvA7px9wz1zQF7sbnumFhWCZQc5KFvmSZ1Vh Gfim1TownM9KEfnJ01kGaPXyLLkNmJuVuPTaMUzeHBLQzU935WuhXKLQxKpNdBdZ EGNA3NaH+8NsXK/eMnhcEumdjC+nnzlBauLefPAM7ogb3T+3LH9M3Q16wcchzpMl MKv0fVMG8MC3JiU2/M76DvPsCMYsI109X/1tw+CAxZvzr9QuQ6fPdxpIfs1X0RWw Vu844SjUfIc= =Xt8x -----END PGP SIGNATURE----- Thu May 9 22:10:19 UTC 2024 I: Checking whether the package is not for us Thu May 9 22:10:19 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu May 9 22:10:19 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu May 9 22:10:50 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 16:33:21 -12 2025 I: pbuilder-time-stamp: 1749702801 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-featureio-perl_1.6.905-2.dsc] I: copying [./libbio-featureio-perl_1.6.905.orig.tar.gz] I: copying [./libbio-featureio-perl_1.6.905-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 13 08:08:44 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-featureio-perl_1.6.905-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-featureio-perl in libbio-featureio-perl-1.6.905 dpkg-source: info: unpacking libbio-featureio-perl_1.6.905.orig.tar.gz dpkg-source: info: unpacking libbio-featureio-perl_1.6.905-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1038190/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='56bf576477944743aac8899b73b6862e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1038190' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/pbuilderrc_yJoY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/b1 --logfile b1/build.log libbio-featureio-perl_1.6.905-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1038190/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libtree-dagnode-perl; however: Package libtree-dagnode-perl is not installed. pbuilder-satisfydepends-dummy depends on liburi-perl; however: Package liburi-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-dom-perl; however: Package libxml-dom-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-dom-xpath-perl; however: Package libxml-dom-xpath-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-slurp-tiny-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtree-dagnode-perl{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-dom-perl{a} libxml-dom-xpath-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-xpathengine-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-libxml-perl libxml-libxslt-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 25.6 MB of archives. After unpacking 96.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 40 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfile-slurp-tiny-perl all 0.004-2 [7592 B] Get: 49 http://deb.debian.org/debian trixie/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.28-1 [98.6 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libhtml-parser-perl arm64 3.82-1 [96.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 59 http://deb.debian.org/debian trixie/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libtree-dagnode-perl all 1.32-1 [61.7 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libxml-parser-perl arm64 2.47-1+b2 [197 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libxml-perl all 0.08-4 [93.0 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get: 77 http://deb.debian.org/debian trixie/main arm64 libxml-dom-perl all 1.46-2 [152 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libxml-dom-xpath-perl all 0.14-4 [9352 B] Fetched 25.6 MB in 0s (148 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.2.1-3_arm64.deb ... Unpacking openssl (3.2.1-3) ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/libbio-featureio-perl-1.6.905/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-featureio-perl_1.6.905-2_source.changes dpkg-buildpackage: info: source package libbio-featureio-perl dpkg-buildpackage: info: source version 1.6.905-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-featureio-perl-1.6.905=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-featureio-perl-1.6.905=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::FeatureIO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-featureio-perl-1.6.905' cp lib/Bio/FeatureIO/interpro.pm blib/lib/Bio/FeatureIO/interpro.pm cp lib/Bio/FeatureIO.pm blib/lib/Bio/FeatureIO.pm cp lib/Bio/SeqFeature/Annotated.pm blib/lib/Bio/SeqFeature/Annotated.pm cp lib/Bio/FeatureIO/bed.pm blib/lib/Bio/FeatureIO/bed.pm cp lib/Bio/FeatureIO/ptt.pm blib/lib/Bio/FeatureIO/ptt.pm cp lib/Bio/FeatureIO/vecscreen_simple.pm blib/lib/Bio/FeatureIO/vecscreen_simple.pm cp lib/Bio/FeatureIO/gff.pm blib/lib/Bio/FeatureIO/gff.pm cp lib/Bio/FeatureIO/gtf.pm blib/lib/Bio/FeatureIO/gtf.pm Manifying 8 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-featureio-perl-1.6.905' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-featureio-perl-1.6.905' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/release-SeqFeature/*.t t/00-compile.t .................... 1..8 ok 1 - Bio/FeatureIO.pm loaded ok ok 2 - Bio/FeatureIO/bed.pm loaded ok ok 3 - Bio/FeatureIO/gff.pm loaded ok ok 4 - Bio/FeatureIO/gtf.pm loaded ok ok 5 - Bio/FeatureIO/interpro.pm loaded ok ok 6 - Bio/FeatureIO/ptt.pm loaded ok ok 7 - Bio/FeatureIO/vecscreen_simple.pm loaded ok ok 8 - Bio/SeqFeature/Annotated.pm loaded ok ok t/bed.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 1..7 ok t/FeatureIO.t ..................... ok 1 - use Bio::FeatureIO; ok 2 - use Bio::FeatureIO::gff; ok 3 - use Bio::FeatureIO::ptt; ok 4 - use Bio::FeatureIO::vecscreen_simple; ok 5 - use Bio::SeqFeature::Annotated; 1..5 ok t/gff.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeatureI' ok 8 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeature::Annotated' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 not ok 122 # TODO Add clustering groups based on grouping within the file # Failed (TODO) test at t/gff.t line 366. 1..122 ok t/ptt.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - ptt file 1..11 ok t/release-mojibake.t .............. skipped: these tests are for release candidate testing t/release-pod-coverage.t .......... skipped: these tests are for release candidate testing t/release-pod-syntax.t ............ skipped: these tests are for release candidate testing t/release-SeqFeature/Annotated.t .. skipped: these tests are for release candidate testing t/vecscreen.t ..................... ok 1 ok 2 - vecscreen_simple gets the correct features 1..2 ok All tests successful. Files=10, Tests=155, 3 wallclock secs ( 0.04 usr 0.05 sys + 2.16 cusr 0.38 csys = 2.63 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-featureio-perl-1.6.905' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install --destdir=debian/libbio-featureio-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-featureio-perl-1.6.905' Manifying 8 pod documents Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/SeqFeature/Annotated.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gtf.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gff.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/vecscreen_simple.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/ptt.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/bed.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/interpro.pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::SeqFeature::Annotated.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::ptt.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::interpro.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gtf.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gff.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::bed.3pm Installing /build/reproducible-path/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-featureio-perl-1.6.905' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-featureio-perl' in '../libbio-featureio-perl_1.6.905-2_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-featureio-perl_1.6.905-2_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-featureio-perl_1.6.905-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1038190 and its subdirectories I: Current time: Wed Jun 11 16:33:49 -12 2025 I: pbuilder-time-stamp: 1749702829 Thu May 9 22:10:51 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu May 9 22:10:51 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu May 9 22:11:32 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu May 9 22:11:32 UTC 2024 I: libbio-featureio-perl_1.6.905-2_arm64.changes: Format: 1.8 Date: Mon, 13 Jan 2020 09:01:02 +0100 Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: all Version: 1.6.905-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-featureio-perl - Modules for reading, writing, and manipulating sequence features Changes: libbio-featureio-perl (1.6.905-2) unstable; urgency=medium . * Team upload * Source-only upload to allow testing migration Checksums-Sha1: 292118ae3859728f913797de402eca546aa61cee 50984 libbio-featureio-perl_1.6.905-2_all.deb dabc6b94f56a2bd4ee34e7a3abf94d542d6a03a6 6485 libbio-featureio-perl_1.6.905-2_arm64.buildinfo Checksums-Sha256: 3124f7dd5e8c509d0d07dab8986a59d5b21d5839b29b31ce28f560d635c1fe62 50984 libbio-featureio-perl_1.6.905-2_all.deb 124ebc085ee676e48a106a07e367d132aba1c48f322c7d1160e74dd30e1358c9 6485 libbio-featureio-perl_1.6.905-2_arm64.buildinfo Files: 5d42b645a053bd7c18c37cc879c5a911 50984 perl optional libbio-featureio-perl_1.6.905-2_all.deb 1adf4e48746682b1ead0f28555f9d95f 6485 science optional libbio-featureio-perl_1.6.905-2_arm64.buildinfo Thu May 9 22:11:34 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-34520.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/libbio-featureio-perl_1.6.905-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/libbio-featureio-perl_1.6.905-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/libbio-featureio-perl_1.6.905-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/b1/libbio-featureio-perl_1.6.905-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ThHST53L/b2/libbio-featureio-perl_1.6.905-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.371s) 0.371s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 711ms CPU time consumed: 710ms Thu May 9 22:11:35 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Thu May 9 22:11:35 UTC 2024 I: libbio-featureio-perl from trixie built successfully and reproducibly on arm64. Thu May 9 22:11:36 UTC 2024 I: Submitting .buildinfo files to external archives: Thu May 9 22:11:36 UTC 2024 I: Submitting 8.0K b1/libbio-featureio-perl_1.6.905-2_arm64.buildinfo.asc Thu May 9 22:11:37 UTC 2024 I: Submitting 8.0K b2/libbio-featureio-perl_1.6.905-2_arm64.buildinfo.asc Thu May 9 22:11:37 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 9 22:11:37 UTC 2024 I: Done submitting .buildinfo files. Thu May 9 22:11:37 UTC 2024 I: Removing signed libbio-featureio-perl_1.6.905-2_arm64.buildinfo.asc files: removed './b1/libbio-featureio-perl_1.6.905-2_arm64.buildinfo.asc' removed './b2/libbio-featureio-perl_1.6.905-2_arm64.buildinfo.asc'