Tue May 14 10:10:11 UTC 2024 I: starting to build libbio-cluster-perl/trixie/arm64 on jenkins on '2024-05-14 10:09' Tue May 14 10:10:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_18/41001/console.log Tue May 14 10:10:11 UTC 2024 I: Downloading source for trixie/libbio-cluster-perl=1.7.3-6 --2024-05-14 10:10:11-- http://deb.debian.org/debian/pool/main/libb/libbio-cluster-perl/libbio-cluster-perl_1.7.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-cluster-perl_1.7.3-6.dsc’ 0K .. 100% 258M=0s 2024-05-14 10:10:11 (258 MB/s) - ‘libbio-cluster-perl_1.7.3-6.dsc’ saved [2201/2201] Tue May 14 10:10:11 UTC 2024 I: libbio-cluster-perl_1.7.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-cluster-perl Binary: libbio-cluster-perl Architecture: all Version: 1.7.3-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Cluster Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-cluster-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-cluster-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl Package-List: libbio-cluster-perl deb perl optional arch=all Checksums-Sha1: fd457abb417cd02daa2d9fd679f74aa372974e08 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 3ad3a0be46ebcac0abd0501a052975daad9f909c 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz Checksums-Sha256: 1967fb3899b92f245b5bf6cb64ef076fc3f8427b1a96ca5f7b74d220b6191fbb 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 9ba3e4d2ad5f9d3b62b5156b8e9e05949ab1c267c0f495349852bbe7260dd153 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz Files: 9a1b88476a3fe576ca6749b98aff3453 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 0aba216206f1d7d942ae86057d7f1b08 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmJAOAoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpg8g//WvwchPxH77MokJHH4sPOQovPLwnD C6bCFgzH7dlNNMf39cdS9mn4V1SwIRLU22gp6a3F9qii+yaxLO+ErCkC9HSRL25L O1kPaJP3VGVswKkTgMqwAB3nIEzjVO6rZgjrwfRB194cno5Y/Y+8z3Fa6Dfj+cWP AWR6BwBFlcdOXMU4M9CMC6oyesyKZnDmV7TBxGg0q/bhxp4JVa26anbRy5pJjGR3 vlMXkwiCARgWKwx16HJFVAxsZrPuScqfPLV2KmW26rATr5nkRfbw7H3ZmZ7WWHVG 5ApAbU5Ijpu+Vf1G+vL4Qv5dBkjVodBy4oEL96l0lm634CockjgCbSoNBD9dxA0s yzKD+xgelORTTs36kQVcJpaje/IfRViSXel58tO8P8rYdAAQuVeJYgH2uMFciHNQ Q7zZ5gW6D/h70Q7tOncRoiWLNA5bkfRBPWkTshrjhIk/iHyLyl/9JgCuSes+BUeT biAqM1/HOfd2YZ9QRtqeA9VdWPIEGmKEQ7cflg9mEtNQDBtqkI9konvjrcAEJx+T krw5J11UFv75kBcVH8IqaTNBGHJGDBQsBPcj2Qlu9LZrWHR5ryDBS+CPqnJLYspS CVTHiDQ78x1nzeBIRaZ9vkyD8mHuOVB6zcQkB+sly+3ME6kuzSpU4zUo99vjpxQR Cnjt0IwiOjC+IBA= =sGra -----END PGP SIGNATURE----- Tue May 14 10:10:11 UTC 2024 I: Checking whether the package is not for us Tue May 14 10:10:11 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue May 14 10:10:11 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue May 14 10:10:45 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 22:10:13 -12 2024 I: pbuilder-time-stamp: 1715681413 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-cluster-perl_1.7.3-6.dsc] I: copying [./libbio-cluster-perl_1.7.3.orig.tar.gz] I: copying [./libbio-cluster-perl_1.7.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 27 10:10:18 2022 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-cluster-perl_1.7.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-cluster-perl in libbio-cluster-perl-1.7.3 dpkg-source: info: unpacking libbio-cluster-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3922690/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d0f6bd46471b482cae9cf889a35f7036' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3922690' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/pbuilderrc_BHqz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/b1 --logfile b1/build.log libbio-cluster-perl_1.7.3-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 11 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3922690/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however: Package libxml-sax-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-variation-perl; however: Package libbio-variation-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 25.7 MB of archives. After unpacking 96.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.2.1-3 [1324 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.28-1 [98.6 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libhtml-parser-perl arm64 3.82-1 [96.9 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libxml-parser-perl arm64 2.47-1+b2 [197 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 68 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Fetched 25.7 MB in 0s (93.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.2.1-3_arm64.deb ... Unpacking openssl (3.2.1-3) ... 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Setting up libexpat1:arm64 (2.6.2-1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.2.1-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.21-14+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-4) ... Setting up libhtml-parser-perl:arm64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.15.3) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b2) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Processing triggers for libc-bin (2.38-10) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes dpkg-buildpackage: info: source package libbio-cluster-perl dpkg-buildpackage: info: source version 1.7.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Cluster Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm Manifying 10 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..10 ok 1 - Bio/Cluster.pm loaded ok ok 2 - Bio/Cluster/ClusterFactory.pm loaded ok ok 3 - Bio/Cluster/FamilyI.pm loaded ok ok 4 - Bio/Cluster/SequenceFamily.pm loaded ok ok 5 - Bio/Cluster/UniGene.pm loaded ok ok 6 - Bio/Cluster/UniGeneI.pm loaded ok ok 7 - Bio/ClusterI.pm loaded ok ok 8 - Bio/ClusterIO.pm loaded ok ok 9 - Bio/ClusterIO/dbsnp.pm loaded ok ok 10 - Bio/ClusterIO/unigene.pm loaded ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/Cluster-UniGene.t .... 1..2 ok 1 - use Bio::Cluster::UniGene; ok 2 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::AnnotatableI' ok t/ClusterIO-unigene.t .. 1..73 ok 1 - use Bio::ClusterIO; ok 2 - new Bio::ClusterIO object defined ok 3 ok 4 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 5 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::ClusterI' ok 6 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::IdentifiableI' ok 7 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::DescribableI' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 49 ok 50 ok 51 - annotation object defined ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 67 ok 68 - next cluster ok 69 ok 70 ok 71 ok 72 ok 73 ok t/ClusterIO.t .......... 1..12 ok 1 - use Bio::ClusterIO; ok 2 - use Bio::Cluster::ClusterFactory; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 12 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok t/SequenceFamily.t ..... 1..17 ok 1 - use Bio::SeqIO; ok 2 - use Bio::Cluster::SequenceFamily; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok All tests successful. Files=7, Tests=114, 2 wallclock secs ( 0.06 usr 0.01 sys + 1.39 cusr 0.22 csys = 1.68 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-cluster-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' Manifying 10 pod documents Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::FamilyI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-cluster-perl' in '../libbio-cluster-perl_1.7.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3922690 and its subdirectories I: Current time: Mon May 13 22:10:44 -12 2024 I: pbuilder-time-stamp: 1715681444 Tue May 14 10:10:46 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Tue May 14 10:10:46 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Tue May 14 10:12:10 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Tue May 14 10:12:11 UTC 2024 I: libbio-cluster-perl_1.7.3-6_arm64.changes: Format: 1.8 Date: Sun, 27 Mar 2022 11:18:53 +0200 Source: libbio-cluster-perl Binary: libbio-cluster-perl Architecture: all Version: 1.7.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbio-cluster-perl - BioPerl cluster modules Changes: libbio-cluster-perl (1.7.3-6) unstable; urgency=medium . * Team upload. * d/control: depend on libxml-sax-perl, needed by needed by Bio::ClusterIO, fixing autopkgtest failure in the process. * Standards-Version: 4.6.0 (routine-update) * watch file standard 4 (routine-update) Checksums-Sha1: 18a92e8dce1eb03d6b2da3499f70e2bb7e733768 50668 libbio-cluster-perl_1.7.3-6_all.deb e914c91bf49b16b402a22757d22025846b6ba1ea 6468 libbio-cluster-perl_1.7.3-6_arm64.buildinfo Checksums-Sha256: 34e4862023f3f46028cac228ae617d7ba16ebda75ddffe5fee8a436ef94c09e1 50668 libbio-cluster-perl_1.7.3-6_all.deb e0cba4e894006f7d0942a0cde9e585dfa575253ddc176a5f28eb629be037a1b1 6468 libbio-cluster-perl_1.7.3-6_arm64.buildinfo Files: c39e38f3558fc112bd32ba6ec157611d 50668 perl optional libbio-cluster-perl_1.7.3-6_all.deb cde71674214c6d90f81f88cc84ef39e9 6468 perl optional libbio-cluster-perl_1.7.3-6_arm64.buildinfo Tue May 14 10:12:12 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_18-41001.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/libbio-cluster-perl_1.7.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/libbio-cluster-perl_1.7.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/libbio-cluster-perl_1.7.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/b1/libbio-cluster-perl_1.7.3-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eNFEz2y7/b2/libbio-cluster-perl_1.7.3-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.365s) 0.365s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 703ms CPU time consumed: 704ms Tue May 14 10:12:14 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Tue May 14 10:12:14 UTC 2024 I: libbio-cluster-perl from trixie built successfully and reproducibly on arm64. Tue May 14 10:12:15 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 14 10:12:15 UTC 2024 I: Submitting 8.0K b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc Tue May 14 10:12:16 UTC 2024 I: Submitting 8.0K b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc Tue May 14 10:12:16 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 14 10:12:16 UTC 2024 I: Done submitting .buildinfo files. Tue May 14 10:12:16 UTC 2024 I: Removing signed libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc files: removed './b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc' removed './b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc'