Thu Dec 5 10:24:25 UTC 2024 I: starting to build glam2/trixie/arm64 on jenkins on '2024-12-05 10:24' Thu Dec 5 10:24:25 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/49585/console.log Thu Dec 5 10:24:25 UTC 2024 I: Downloading source for trixie/glam2=1064-10 --2024-12-05 10:24:25-- http://deb.debian.org/debian/pool/main/g/glam2/glam2_1064-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2035 (2.0K) [text/prs.lines.tag] Saving to: ‘glam2_1064-10.dsc’ 0K . 100% 291M=0s 2024-12-05 10:24:25 (291 MB/s) - ‘glam2_1064-10.dsc’ saved [2035/2035] Thu Dec 5 10:24:25 UTC 2024 I: glam2_1064-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: glam2 Binary: glam2 Architecture: any Version: 1064-10 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: https://meme-suite.org/meme/doc/glam2.html?man_type=web Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/glam2 Vcs-Git: https://salsa.debian.org/med-team/glam2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libfftw3-dev Package-List: glam2 deb science optional arch=any Checksums-Sha1: 655dec5140c3293953c7160b41cdbd073c00e2ca 237926 glam2_1064.orig.tar.gz c50011f8ae76c237332905b1e086c34ca1502140 12624 glam2_1064-10.debian.tar.xz Checksums-Sha256: 7cdcb290792e79d984d1244940cd2f4d9f92182e4611e6c441d3c273d1f30c40 237926 glam2_1064.orig.tar.gz 5eb5edb9eaf6f6b403ab7aab3ae9241334e8ba7bb0584edf6137e653f792e343 12624 glam2_1064-10.debian.tar.xz Files: 84ec46d59e299c4cd70cd0b900696c30 237926 glam2_1064.orig.tar.gz 4b094e946edc2c30b744e1cefbcb5d0b 12624 glam2_1064-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdO+gkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHVDA//Xx9Q1wJerMDjLkZ1CYagkvBN5WgGkD85 bSGgtyFX9a9wO4+YkaUf815sBMDTcmeOq+PxZqc/5Y44v/EmYxwJrlbNxF1YBhtg HyRjYmeIyACckIlslIdlA6OpYBjs8h8COQk2zwj+9E0Rq+Nr+uIw2aVIUv9rxCtX Qtp+imEg7XhVAzxqdCHR6gOEyUG/Rq3igkvrBRtVTxXcCqCu/+PgEir6q+VOVKjy 2CaAlem0b9wztuOQ6FDDUHTW/wHMx3nn4N4WVEh+CDv8mdFd+aM75pR7fhiR5OAR +RAaqq6Ba+alwfmrokw5Icd6WxmJ8L3R9qUYXCg8SEpKGlMoEJ3A1v2W4svpU7lW yFydWgCvcv9U1LVe+UJIiqYwpwEz3vw0SNclLEXq9iZKRoXUH3ta2Btbd/JQkB8U fROh/4o9Ld3CueoFHV1Kqhhxu++VLYylphzgl5YGhxV1xLl8IZoKsA/PvBavHhZe 0Gb6NeCDRilB5K0gYlNZby4ZK2gGnUhDRTtEFiNDCkYNpt9mzjlL1184p8PNGHG2 IxqgoHRWdETBsETOwe5fex6obek4XFLsPf5VkBAvg9uxHUTQqDXkligewOJ4RJ5f 2QRJ4Af8DpJ4dBEUnqlz/hsec3JxQ3qLPECHzonwx9rO/KU5NaYypBbL2B9korUy Ax+5v7OYJU8= =I6/Y -----END PGP SIGNATURE----- Thu Dec 5 10:24:25 UTC 2024 I: Checking whether the package is not for us Thu Dec 5 10:24:25 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Dec 5 10:24:25 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Dec 5 10:25:07 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 7 04:47:27 -12 2026 I: pbuilder-time-stamp: 1767804447 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [glam2_1064-10.dsc] I: copying [./glam2_1064.orig.tar.gz] I: copying [./glam2_1064-10.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 3 12:31:05 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./glam2_1064-10.dsc: no acceptable signature found dpkg-source: info: extracting glam2 in glam2-1064 dpkg-source: info: unpacking glam2_1064.orig.tar.gz dpkg-source: info: unpacking glam2_1064-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying change-fixed-compilers.patch dpkg-source: info: applying fix_html_syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/932337/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e2b304101ddc49ed85bed6bebab54f9c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='932337' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/pbuilderrc_6HDV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/b1 --logfile b1/build.log glam2_1064-10.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/932337/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libfftw3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 22.1 MB of archives. After unpacking 91.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libfftw3-long3 arm64 3.3.10-2+b1 [546 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libfftw3-single3 arm64 3.3.10-2+b1 [517 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libfftw3-bin arm64 3.3.10-2+b1 [44.3 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libfftw3-dev arm64 3.3.10-2+b1 [1280 kB] Fetched 22.1 MB in 0s (143 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../29-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libfftw3-long3:arm64. Preparing to unpack .../30-libfftw3-long3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-long3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libfftw3-single3:arm64. Preparing to unpack .../31-libfftw3-single3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-single3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../32-libfftw3-bin_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-bin (3.3.10-2+b1) ... Selecting previously unselected package libfftw3-dev:arm64. Preparing to unpack .../33-libfftw3-dev_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-dev:arm64 (3.3.10-2+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libfftw3-single3:arm64 (3.3.10-2+b1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libfftw3-long3:arm64 (3.3.10-2+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libfftw3-dev:arm64 (3.3.10-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/glam2-1064/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../glam2_1064-10_source.changes dpkg-buildpackage: info: source package glam2 dpkg-buildpackage: info: source version 1064-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_clean rm -f purge/*.o purge/purge src/*.o src/glam2 src/glam2mask scr/glam2format src/glam2scan src/glam2fft src/glam2format make[1]: Leaving directory '/build/reproducible-path/glam2-1064' debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_auto_build cd src && make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/glam2-1064/src' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -o glam2 alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -o glam2scan alphabet.c scan_args.c dirichlet.c dna_prior.c fasta.c scan.c scan_init.c scan_output.c recode3_20comp.c util.c heap.c motif.c alignment.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -o glam2format glam2format.c alignment.c fasta.c util.c -lm -Wl,-z,relro -Wl,-z,now cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -o glam2mask glam2mask.c alignment.c fasta.c util.c -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/glam2-1064/src' dh_auto_build -B src -- glam2fft cd src && make -j12 "INSTALL=install --strip-program=true" glam2fft make[2]: Entering directory '/build/reproducible-path/glam2-1064/src' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -DFFT -o glam2fft alphabet.c args.c column_sample.c dirichlet.c dna_prior.c fasta.c glam2.c glam2_aln.c init.c output.c recode3_20comp.c site_sample.c util.c convolve.c -lm -lfftw3 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/glam2-1064/src' dh_auto_build -B purge cd purge && make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/glam2-1064/purge' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/glam2-1064=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -o purge *.c -lm -Wl,-z,relro -Wl,-z,now block.c: In function 'IntersectBlockL': block.c:314:25: warning: operation on '*(B2->b + (sizetype)e)' may be undefined [-Wsequence-point] 314 | if((B2->b[e] = B1->b[e]) & B2->b[e]) {B2->list[k++]=e; } | ~~~~~~~~~~^~~~~~~~~~~ gblast.c: In function 'MakeGBlast': gblast.c:110:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 110 | for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); | ^~~ gblast.c:110:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 110 | for(c=0; c <= nAlpha(A); c++) free(best[c]); free(best); | ^~~~ gblast.c:14:21: warning: variable 'time1' set but not used [-Wunused-but-set-variable] 14 | long time1; | ^~~~~ gblast.c:11:19: warning: variable 'R' set but not used [-Wunused-but-set-variable] 11 | int **R; | ^ sequence.c: In function 'RandomizeSeq': sequence.c:235:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 235 | if(E->info!=NULL)free(E->info); E->info = NULL; return E; | ^~ sequence.c:235:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 235 | if(E->info!=NULL)free(E->info); E->info = NULL; return E; | ^ sequence.c: In function 'ShuffleSeq': sequence.c:290:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 290 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^~ sequence.c:290:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 290 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^ sequence.c: In function 'ShuffleSeq2': sequence.c:309:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 309 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^~ sequence.c:309:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | if(E->info!=NULL)free(E->info); E->info = NULL; | ^ sequence.c: In function 'CenterSeqHSP': sequence.c:429:27: warning: variable 'score' set but not used [-Wunused-but-set-variable] 429 | long v,n,n1,n2,score=0,e,start,end; | ^~~~~ make[2]: Leaving directory '/build/reproducible-path/glam2-1064/purge' make[1]: Leaving directory '/build/reproducible-path/glam2-1064' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/glam2/ -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_install # purge is renamed glam2-purge to avoid namespace problems. mv /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/purge /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/glam2-purge # FFT is enabled by default in Debian. mv /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/glam2fft /build/reproducible-path/glam2-1064/debian/glam2/usr/bin/glam2 make[1]: Leaving directory '/build/reproducible-path/glam2-1064' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/glam2-1064' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/glam2-1064' dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'glam2' in '../glam2_1064-10_arm64.deb'. dpkg-deb: building package 'glam2-dbgsym' in '../glam2-dbgsym_1064-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../glam2_1064-10_arm64.buildinfo dpkg-genchanges --build=binary -O../glam2_1064-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/932337 and its subdirectories I: Current time: Wed Jan 7 04:48:06 -12 2026 I: pbuilder-time-stamp: 1767804486 Thu Dec 5 10:25:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Dec 5 10:25:08 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Dec 5 10:26:00 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Dec 5 10:26:01 UTC 2024 I: glam2_1064-10_arm64.changes: Format: 1.8 Date: Tue, 03 Dec 2024 13:28:48 +0100 Source: glam2 Binary: glam2 glam2-dbgsym Architecture: arm64 Version: 1064-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: glam2 - gapped protein motifs from unaligned sequences Closes: 1081315 Changes: glam2 (1064-10) unstable; urgency=medium . * Fix Homepage Closes: #1081315 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 8c9011bf46fa1ca35b49fb528a9a37223092f011 258096 glam2-dbgsym_1064-10_arm64.deb 25a4759afb13a7b1faa02ade4b7c00d55223ea64 5157 glam2_1064-10_arm64.buildinfo 9ec13fc94360f29700c3bb4c04881ce8d15f4448 229136 glam2_1064-10_arm64.deb Checksums-Sha256: 4796fda534daa9ebd9fd622f30136866c87a6287a2d2af8e8648dd8a13a8fdc6 258096 glam2-dbgsym_1064-10_arm64.deb 7b001f87867bec6a06e917973c9ae346766137d45c8a75632def53280da40b9a 5157 glam2_1064-10_arm64.buildinfo 30cba87548042abf8ab4e3e16ed92ab4bdc2094ce232ed9597358d9a4fba56ab 229136 glam2_1064-10_arm64.deb Files: 0c9916caed1a01d71d3cd224e7f6ecda 258096 debug optional glam2-dbgsym_1064-10_arm64.deb 907d5eb5d7e2cb437f8f448c5351a6c3 5157 science optional glam2_1064-10_arm64.buildinfo 9548b0876bc2ca4d421f2f7bc24bd323 229136 science optional glam2_1064-10_arm64.deb Thu Dec 5 10:26:02 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-49585.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/glam2_1064-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/glam2_1064-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/glam2_1064-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/b1/glam2_1064-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.w0nBYfMh/b2/glam2_1064-10_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.434s) 0.434s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 819ms CPU time consumed: 815ms Thu Dec 5 10:26:03 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 5 10:26:03 UTC 2024 I: glam2 from trixie built successfully and reproducibly on arm64. Thu Dec 5 10:26:04 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Dec 5 10:26:04 UTC 2024 I: Submitting 8.0K b1/glam2_1064-10_arm64.buildinfo.asc Thu Dec 5 10:26:05 UTC 2024 I: Submitting 8.0K b2/glam2_1064-10_arm64.buildinfo.asc Thu Dec 5 10:26:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 5 10:26:06 UTC 2024 I: Done submitting .buildinfo files. Thu Dec 5 10:26:06 UTC 2024 I: Removing signed glam2_1064-10_arm64.buildinfo.asc files: removed './b1/glam2_1064-10_arm64.buildinfo.asc' removed './b2/glam2_1064-10_arm64.buildinfo.asc'