Wed May 15 11:30:20 UTC 2024 I: starting to build gffread/trixie/arm64 on jenkins on '2024-05-15 11:29' Wed May 15 11:30:20 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/11281/console.log Wed May 15 11:30:20 UTC 2024 I: Downloading source for trixie/gffread=0.12.7-4 --2024-05-15 11:30:21-- http://deb.debian.org/debian/pool/main/g/gffread/gffread_0.12.7-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2440 (2.4K) [text/prs.lines.tag] Saving to: ‘gffread_0.12.7-4.dsc’ 0K .. 100% 370M=0s 2024-05-15 11:30:21 (370 MB/s) - ‘gffread_0.12.7-4.dsc’ saved [2440/2440] Wed May 15 11:30:21 UTC 2024 I: gffread_0.12.7-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gffread Binary: gffread Architecture: any Version: 0.12.7-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe , Steffen Moeller Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/gffread Vcs-Git: https://salsa.debian.org/med-team/gffread.git Testsuite: autopkgtest Testsuite-Triggers: augustus-doc, bash, bedtools-test, cnvkit, dpkg-dev, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir, proteinortho, python3-gffutils, python3-pybedtools, seqan-apps, spades Build-Depends: debhelper-compat (= 13), libgclib-dev Package-List: gffread deb science optional arch=any Checksums-Sha1: 2d8d3e6e0e2fba6d9c4df6d194280f46b31072d1 403734 gffread_0.12.7.orig.tar.gz 9e913617549c92c3c7b83936d72b22740cbeef93 8828 gffread_0.12.7-4.debian.tar.xz Checksums-Sha256: 6f3417090b3beb74f435bf5d462c87475b3c704a8a0d71821f6c1321c47dbbbe 403734 gffread_0.12.7.orig.tar.gz 5589db070fe18a904eb4323955355a28464753b77ce39adb1dc7773a795e7742 8828 gffread_0.12.7-4.debian.tar.xz Files: e7b6121f75bf707b487af8850fe3d47c 403734 gffread_0.12.7.orig.tar.gz c306b7afcf06a54da9b8123fc161c8c8 8828 gffread_0.12.7-4.debian.tar.xz Dgit: 6e433f38cd198c0f7600bd479a519696c3d69032 debian archive/debian/0.12.7-4 https://git.dgit.debian.org/gffread -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmSR+x0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqewQ//dt0WvvOXG63up6BwYvj0RIv9nrZY hymCM09BbNqsk5I9f7072TCVWY4RStwTCtr/v8A/xv1FFpS5cFlbSyTezZdQECLs at/SYY5X81P+3lWuE51/uF+o3p2ZY/kaevJAEonKk5L/cnqGoxQPEzWECmnEysU2 XPo7r78j6sUNrTJ7ZmQYMqrQHzxPNZt+wTly/538LPkCNI9CsNjUQCcJOMfC0iK7 P+trjz6552t0zsDGgZK1S99KmDbj+tVQHcJMAQOwZXEY4K+pJ08QRXu4dJn1Gfeh RzU3SsPduFnjPRisk93GO+6tNqZS51kruDlEVxYW06Xa11gxFWJ6wsjUKZhkjCsS /TleZk45CS7ULVdoxp/9M0DrqPBmTlzyywBM1eVkT05Yd2kdEAFxukpD4vznozR+ zN20o86EIpRnEU5BDLca6TmvUKOR4U7YIRtSRTOCTQAiA9EEe7+ZlqeGv84qaKww mpvwNIOIHFdGVY0ocVzrQUo0yJW3zuhV9rUTv64rv8HL4Jb1HPZiisI6w6suXfUX FDCNjekz7QLTN6JUvapQcIJQlRGwn9l2IG9XdnploWtK5G00hofiJmaiG0NzU3F7 OjDGxxP9MHrMNVI/mdNOUKkIbAnOb0pXynIJvNbzPomodGxbEVfWyMQUDoo7XtBz s19ur26++5DTIZ4= =u6Jg -----END PGP SIGNATURE----- Wed May 15 11:30:21 UTC 2024 I: Checking whether the package is not for us Wed May 15 11:30:21 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed May 15 11:30:21 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed May 15 11:30:51 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 14 23:30:23 -12 2024 I: pbuilder-time-stamp: 1715772623 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gffread_0.12.7-4.dsc] I: copying [./gffread_0.12.7.orig.tar.gz] I: copying [./gffread_0.12.7-4.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jun 20 19:16:45 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-4.dsc: no acceptable signature found dpkg-source: info: extracting gffread in gffread-0.12.7 dpkg-source: info: unpacking gffread_0.12.7.orig.tar.gz dpkg-source: info: unpacking gffread_0.12.7-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gclib.patch dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2465907/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6b843e54f73d4637b5c5091b0a7d0380' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2465907' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/pbuilderrc_mTTY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/b1 --logfile b1/build.log gffread_0.12.7-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 14 11:23 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2465907/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libgclib-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libgclib-dev; however: Package libgclib-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgclib-dev{a} libgclib3{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After unpacking 77.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libgclib3 arm64 0.12.7+ds-5+b1 [133 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libgclib-dev arm64 0.12.7+ds-5+b1 [270 kB] Fetched 19.1 MB in 0s (52.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libgclib3:arm64. Preparing to unpack .../30-libgclib3_0.12.7+ds-5+b1_arm64.deb ... Unpacking libgclib3:arm64 (0.12.7+ds-5+b1) ... Selecting previously unselected package libgclib-dev:arm64. Preparing to unpack .../31-libgclib-dev_0.12.7+ds-5+b1_arm64.deb ... Unpacking libgclib-dev:arm64 (0.12.7+ds-5+b1) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libgclib3:arm64 (0.12.7+ds-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libgclib-dev:arm64 (0.12.7+ds-5+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gffread-0.12.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gffread_0.12.7-4_source.changes dpkg-buildpackage: info: source package gffread dpkg-buildpackage: info: source version 0.12.7-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/gffread-0.12.7' make[1]: Leaving directory '/build/reproducible-path/gffread-0.12.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/gffread-0.12.7' dh_auto_build -- 'LINKER=$(CXX)' make -j12 "INSTALL=install --strip-program=true" LINKER=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/gffread-0.12.7' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -std=c++11 -I. -I/usr/include/gclib -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O2 -ffile-prefix-map=/build/reproducible-path/gffread-0.12.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gffread.cpp -o gffread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -std=c++11 -I. -I/usr/include/gclib -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O2 -ffile-prefix-map=/build/reproducible-path/gffread-0.12.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gff_utils.cpp -o gff_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -o gffread gffread.o gff_utils.o -lgclib -pthread make[2]: Leaving directory '/build/reproducible-path/gffread-0.12.7' make[1]: Leaving directory '/build/reproducible-path/gffread-0.12.7' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/gffread/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'gffread' in '../gffread_0.12.7-4_arm64.deb'. dpkg-deb: building package 'gffread-dbgsym' in '../gffread-dbgsym_0.12.7-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../gffread_0.12.7-4_arm64.buildinfo dpkg-genchanges --build=binary -O../gffread_0.12.7-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2465907 and its subdirectories I: Current time: Tue May 14 23:30:50 -12 2024 I: pbuilder-time-stamp: 1715772650 Wed May 15 11:30:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Wed May 15 11:30:52 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Wed May 15 11:31:43 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Wed May 15 11:31:44 UTC 2024 I: gffread_0.12.7-4_arm64.changes: Format: 1.8 Date: Tue, 20 Jun 2023 21:03:42 +0200 Source: gffread Binary: gffread gffread-dbgsym Architecture: arm64 Version: 0.12.7-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: gffread - GFF/GTF format conversions, region filtering, FASTA sequence extr Closes: 1033703 Changes: gffread (0.12.7-4) unstable; urgency=medium . * Team upload. * d/t/*: work around uninstallable packages. The change involves not testing gffread anymore against trinityrnaseq until it is back to testing, and not testing against R BioC modules until libboost 1.81 transition is finished. (Closes: #1033703) * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: dffe89ff1d961151d3bbb9bea75a678db6f3d3fa 202908 gffread-dbgsym_0.12.7-4_arm64.deb cdaba3fbb9bcbb4f783e70c2e4245105760221f6 5153 gffread_0.12.7-4_arm64.buildinfo 28eed22a1a1e9def3ee87841294cb4f909c8dced 56744 gffread_0.12.7-4_arm64.deb Checksums-Sha256: fc21a7cc6588acc39ebf7fd0ea54f80178fd24e92ae13410f1b0cf1a7d7f3f8d 202908 gffread-dbgsym_0.12.7-4_arm64.deb e2cd1220b1969816eb0aae27a2c2bc8042e99c099ca9a982278a3df7e5e60cf0 5153 gffread_0.12.7-4_arm64.buildinfo 0b2c6986c0fcc0955ac109b7c5b9ac2e2e27937980f4826cc665bd48b725872e 56744 gffread_0.12.7-4_arm64.deb Files: 0ae58a3deb839480e8e5de9dbd595104 202908 debug optional gffread-dbgsym_0.12.7-4_arm64.deb 39947d47cd877df88b8dd31883d3b9df 5153 science optional gffread_0.12.7-4_arm64.buildinfo 95ca049acc1c1faab85f6f9d7922a650 56744 science optional gffread_0.12.7-4_arm64.deb Wed May 15 11:31:45 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_22-11281.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/gffread_0.12.7-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/gffread_0.12.7-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/gffread_0.12.7-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/b1/gffread_0.12.7-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ulJJbAaR/b2/gffread_0.12.7-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.386s) 0.386s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 730ms CPU time consumed: 731ms Wed May 15 11:31:46 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Wed May 15 11:31:46 UTC 2024 I: gffread from trixie built successfully and reproducibly on arm64. Wed May 15 11:31:47 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 15 11:31:47 UTC 2024 I: Submitting 8.0K b1/gffread_0.12.7-4_arm64.buildinfo.asc Wed May 15 11:31:48 UTC 2024 I: Submitting 8.0K b2/gffread_0.12.7-4_arm64.buildinfo.asc Wed May 15 11:31:49 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 15 11:31:49 UTC 2024 I: Done submitting .buildinfo files. Wed May 15 11:31:49 UTC 2024 I: Removing signed gffread_0.12.7-4_arm64.buildinfo.asc files: removed './b1/gffread_0.12.7-4_arm64.buildinfo.asc' removed './b2/gffread_0.12.7-4_arm64.buildinfo.asc'