Thu Feb 20 22:41:26 UTC 2025  I: starting to build freebayes/trixie/arm64 on jenkins on '2025-02-20 22:41'
Thu Feb 20 22:41:26 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/78414/console.log
Thu Feb 20 22:41:26 UTC 2025  I: Downloading source for trixie/freebayes=1.3.9-1
--2025-02-20 22:41:26--  http://deb.debian.org/debian/pool/main/f/freebayes/freebayes_1.3.9-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2201 (2.1K) [text/prs.lines.tag]
Saving to: ‘freebayes_1.3.9-1.dsc’

     0K ..                                                    100%  343M=0s

2025-02-20 22:41:26 (343 MB/s) - ‘freebayes_1.3.9-1.dsc’ saved [2201/2201]

Thu Feb 20 22:41:26 UTC 2025  I: freebayes_1.3.9-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: freebayes
Binary: freebayes
Architecture: any
Version: 1.3.9-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Brad Chapman <chapmanb@50mail.com>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/ekg/freebayes
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/freebayes
Vcs-Git: https://salsa.debian.org/med-team/freebayes.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), meson, ninja-build, pkgconf, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.12~), libtabixpp-dev, libseqlib-dev, bc, samtools, parallel <!nocheck>, libvcflib-tools <!nocheck>, debhelper
Package-List:
 freebayes deb science optional arch=any
Checksums-Sha1:
 0443ffd825ff71056ed8b225e49b1101a65135a1 2896143 freebayes_1.3.9.orig.tar.gz
 a7d2f742fea1903522acf62b793c4366a327cc4f 19708 freebayes_1.3.9-1.debian.tar.xz
Checksums-Sha256:
 41ed3074c7648375286168a6708e02dac6788eaca4ca6039ff5a7ed91f257b53 2896143 freebayes_1.3.9.orig.tar.gz
 7a59242fe78e86986fb0f1410f5a282c19d352651b8f76611a4cedee9e3ccdc3 19708 freebayes_1.3.9-1.debian.tar.xz
Files:
 5675648a05ad1d770a1c1e96f8c8f1d5 2896143 freebayes_1.3.9.orig.tar.gz
 a5d83229bdb0a1bad16e8daba7d9acef 19708 freebayes_1.3.9-1.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=maHH
-----END PGP SIGNATURE-----
Thu Feb 20 22:41:26 UTC 2025  I: Checking whether the package is not for us
Thu Feb 20 22:41:26 UTC 2025  I: Starting 1st build on remote node codethink03-arm64.debian.net.
Thu Feb 20 22:41:26 UTC 2025  I: Preparing to do remote build '1' on codethink03-arm64.debian.net.
Thu Feb 20 22:44:12 UTC 2025  I: Deleting $TMPDIR on codethink03-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 25 17:04:28 -12 2026
I: pbuilder-time-stamp: 1774501468
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [freebayes_1.3.9-1.dsc]
I: copying [./freebayes_1.3.9.orig.tar.gz]
I: copying [./freebayes_1.3.9-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./freebayes_1.3.9-1.dsc: unsupported subcommand
dpkg-source: info: extracting freebayes in freebayes-1.3.9
dpkg-source: info: unpacking freebayes_1.3.9.orig.tar.gz
dpkg-source: info: unpacking freebayes_1.3.9-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Testing-cleaner-build-for-Debian.patch
dpkg-source: info: applying 0003-fastahack-and-smithwaterman-dep-treatment.patch
dpkg-source: info: applying 0004-Simplified-build-for-debian.patch
dpkg-source: info: applying 0005-Put-Variant.h-as-vcflib-Variant.h.patch
dpkg-source: info: applying 0006-Make-vcflib-smithwaterman-and-fastahack-external-inc.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1279144/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  INVOCATION_ID='b4cfe536fd584d77b064cb22a1a02432'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='1279144'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/pbuilderrc_005W --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/b1 --logfile b1/build.log freebayes_1.3.9-1.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.4:3128'
I: uname -a
  Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/1279144/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), meson, ninja-build, pkgconf, zlib1g-dev, libbamtools-dev, libvcflib-dev (>= 1.0.12~), libtabixpp-dev, libseqlib-dev, bc, samtools, parallel, libvcflib-tools, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19923 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on meson; however:
  Package meson is not installed.
 pbuilder-satisfydepends-dummy depends on ninja-build; however:
  Package ninja-build is not installed.
 pbuilder-satisfydepends-dummy depends on pkgconf; however:
  Package pkgconf is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libbamtools-dev; however:
  Package libbamtools-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libvcflib-dev (>= 1.0.12~); however:
  Package libvcflib-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtabixpp-dev; however:
  Package libtabixpp-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libseqlib-dev; however:
  Package libseqlib-dev is not installed.
 pbuilder-satisfydepends-dummy depends on bc; however:
  Package bc is not installed.
 pbuilder-satisfydepends-dummy depends on samtools; however:
  Package samtools is not installed.
 pbuilder-satisfydepends-dummy depends on parallel; however:
  Package parallel is not installed.
 pbuilder-satisfydepends-dummy depends on libvcflib-tools; however:
  Package libvcflib-tools is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper; however:
  Package debhelper is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbamtools-dev{a} libbamtools2.5.2{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbwa-dev{a} libbz2-dev{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfastahack-dev{a} libfastahack0{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfml-dev{a} libfml0{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjbig0{a} libjpeg62-turbo{a} libjsoncpp-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} libldap-dev{a} libldap2{a} liblerc4{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqlib-dev{a} libseqlib2{a} libsharpyuv0{a} libsm6{a} libsmithwaterman-dev{a} libsmithwaterman0{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0t64{a} libtasn1-6{a} libtasn1-6-dev{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libvcflib-dev{a} libvcflib-tools{a} libvcflib2{a} libwebp7{a} libwfa2-0{a} libwfa2-dev{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} openssl{a} parallel{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} r-base-core{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-fansi{a} r-cran-farver{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridbase{a} r-cran-gtable{a} r-cran-isoband{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-scales{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} samtools{a} sensible-utils{a} sysstat{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bcron bzip2-doc cron cronie curl krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libtasn1-doc libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-base-dev r-cran-abind r-cran-bench r-cran-bit64 r-cran-blob r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbi r-cran-diagrammer r-cran-dichromat r-cran-digest r-cran-doparallel r-cran-dplyr r-cran-evaluate r-cran-foreach r-cran-formattable r-cran-fs r-cran-generics r-cran-here r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-lintr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-nanotime r-cran-palmerpenguins r-cran-pkgbuild r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-purrr r-cran-quantreg r-cran-ragg r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-stringi r-cran-survival r-cran-svglite r-cran-testthat r-cran-tidyr r-cran-tidyverse r-cran-unitizer r-cran-units r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info systemd systemd-cron wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 246 newly installed, 0 to remove and 0 not upgraded.
Need to get 132 MB of archives. After unpacking 366 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB]
Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB]
Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB]
Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 16 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 17 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 18 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.1-1 [1390 kB]
Get: 19 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB]
Get: 20 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 21 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 22 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 23 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 24 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 25 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 26 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB]
Get: 27 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 28 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 29 http://deb.debian.org/debian trixie/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B]
Get: 30 http://deb.debian.org/debian trixie/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get: 31 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0049 [42.5 kB]
Get: 32 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 33 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB]
Get: 34 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 35 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB]
Get: 36 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 37 http://deb.debian.org/debian trixie/main arm64 bc arm64 1.07.1-4+b1 [101 kB]
Get: 38 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 39 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB]
Get: 40 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 41 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB]
Get: 42 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 44 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 46 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 47 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 48 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 49 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 50 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 51 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 52 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 53 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 54 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB]
Get: 55 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 56 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB]
Get: 57 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 58 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 59 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 60 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 61 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 62 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-2 [462 kB]
Get: 63 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 64 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 65 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 66 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 67 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 68 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB]
Get: 69 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB]
Get: 70 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB]
Get: 71 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB]
Get: 72 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB]
Get: 73 http://deb.debian.org/debian trixie/main arm64 libbamtools2.5.2 arm64 2.5.2+dfsg-6+b1 [141 kB]
Get: 74 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 75 http://deb.debian.org/debian trixie/main arm64 libbamtools-dev arm64 2.5.2+dfsg-6+b1 [210 kB]
Get: 76 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB]
Get: 77 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB]
Get: 78 http://deb.debian.org/debian trixie/main arm64 libbwa-dev arm64 0.7.18-1 [151 kB]
Get: 79 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get: 80 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 81 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 82 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 83 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 84 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 85 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 86 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 87 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 88 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 89 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB]
Get: 90 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 91 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 92 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 93 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 94 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 95 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 96 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 97 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 98 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 99 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 100 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 101 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 102 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 103 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 105 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.12.0+git20250209.89ed161+ds-1 [336 kB]
Get: 106 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get: 107 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB]
Get: 108 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB]
Get: 109 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB]
Get: 110 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB]
Get: 111 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB]
Get: 112 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB]
Get: 113 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB]
Get: 114 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB]
Get: 115 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB]
Get: 116 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB]
Get: 117 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB]
Get: 118 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB]
Get: 119 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get: 120 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get: 121 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get: 122 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB]
Get: 123 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB]
Get: 124 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB]
Get: 125 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB]
Get: 126 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB]
Get: 127 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB]
Get: 128 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.4.1-1 [3232 kB]
Get: 129 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get: 130 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB]
Get: 131 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.12.0+git20250209.89ed161+ds-1 [465 kB]
Get: 132 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.0+git20250209.89ed161+ds-1 [326 kB]
Get: 133 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB]
Get: 134 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 135 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB]
Get: 136 http://deb.debian.org/debian trixie/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b2 [4920 B]
Get: 137 http://deb.debian.org/debian trixie/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b2 [4888 B]
Get: 138 http://deb.debian.org/debian trixie/main arm64 libfastahack0 arm64 1.0.0+dfsg-11+b2 [23.6 kB]
Get: 139 http://deb.debian.org/debian trixie/main arm64 libfastahack-dev arm64 1.0.0+dfsg-11+b2 [26.1 kB]
Get: 140 http://deb.debian.org/debian trixie/main arm64 libfml0 arm64 0.1+git20221215.85f159e-1 [65.6 kB]
Get: 141 http://deb.debian.org/debian trixie/main arm64 libfml-dev arm64 0.1+git20221215.85f159e-1 [79.9 kB]
Get: 142 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 143 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB]
Get: 144 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.3-2 [1421 kB]
Get: 145 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 146 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 147 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get: 148 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Get: 149 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB]
Get: 150 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB]
Get: 151 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 152 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get: 153 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 154 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 155 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 156 http://deb.debian.org/debian trixie/main arm64 libjsoncpp-dev arm64 1.9.6-3 [25.0 kB]
Get: 157 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB]
Get: 158 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 159 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5+20250125-2 [96.2 kB]
Get: 160 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB]
Get: 161 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB]
Get: 162 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.56.1-1 [213 kB]
Get: 163 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [52.8 kB]
Get: 164 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [33.8 kB]
Get: 165 http://deb.debian.org/debian trixie/main arm64 libpaper2 arm64 2.2.5-0.3+b1 [16.6 kB]
Get: 166 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 2.2.5-0.3+b1 [16.3 kB]
Get: 167 http://deb.debian.org/debian trixie/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 168 http://deb.debian.org/debian trixie/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB]
Get: 169 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-15+b2 [20.0 kB]
Get: 170 http://deb.debian.org/debian trixie/main arm64 libseqlib2 arm64 1.2.0+dfsg-11+b3 [147 kB]
Get: 171 http://deb.debian.org/debian trixie/main arm64 libssw-dev arm64 1.1-15+b2 [23.4 kB]
Get: 172 http://deb.debian.org/debian trixie/main arm64 libseqlib-dev arm64 1.2.0+dfsg-11+b3 [209 kB]
Get: 173 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 174 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB]
Get: 175 http://deb.debian.org/debian trixie/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12+b2 [32.4 kB]
Get: 176 http://deb.debian.org/debian trixie/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-12+b2 [37.9 kB]
Get: 177 http://deb.debian.org/debian trixie/main arm64 libtabixpp0t64 arm64 1.1.2-2.1+b1 [9504 B]
Get: 178 http://deb.debian.org/debian trixie/main arm64 libtabixpp-dev arm64 1.1.2-2.1+b1 [9052 B]
Get: 179 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB]
Get: 180 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 181 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 182 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 183 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get: 184 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB]
Get: 185 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB]
Get: 186 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB]
Get: 187 http://deb.debian.org/debian trixie/main arm64 libwfa2-0 arm64 2.3.3-4+b2 [55.1 kB]
Get: 188 http://deb.debian.org/debian trixie/main arm64 libvcflib2 arm64 1.0.12+dfsg-1 [199 kB]
Get: 189 http://deb.debian.org/debian trixie/main arm64 libwfa2-dev arm64 2.3.3-4+b2 [74.8 kB]
Get: 190 http://deb.debian.org/debian trixie/main arm64 libvcflib-dev arm64 1.0.12+dfsg-1 [77.8 kB]
Get: 191 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB]
Get: 192 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB]
Get: 193 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 194 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB]
Get: 195 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB]
Get: 196 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-2 [102 kB]
Get: 197 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-2 [16.0 kB]
Get: 198 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB]
Get: 199 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.14-1 [2062 kB]
Get: 200 http://deb.debian.org/debian trixie/main arm64 r-cran-plyr arm64 1.8.9-1+b1 [791 kB]
Get: 201 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB]
Get: 202 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.8.0-1 [165 kB]
Get: 203 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.5-1 [1706 kB]
Get: 204 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get: 205 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB]
Get: 206 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB]
Get: 207 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-64-1 [1112 kB]
Get: 208 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB]
Get: 209 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.167-1 [2327 kB]
Get: 210 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-2-1 [4040 kB]
Get: 211 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB]
Get: 212 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1+b1 [1397 kB]
Get: 213 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB]
Get: 214 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB]
Get: 215 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB]
Get: 216 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 217 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get: 218 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB]
Get: 219 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB]
Get: 220 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB]
Get: 221 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB]
Get: 222 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB]
Get: 223 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB]
Get: 224 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
Get: 225 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 226 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [425 kB]
Get: 227 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get: 228 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB]
Get: 229 http://deb.debian.org/debian trixie/main arm64 r-cran-gridbase all 0.4-7-5 [163 kB]
Get: 230 http://deb.debian.org/debian trixie/main arm64 libvcflib-tools arm64 1.0.12+dfsg-1 [548 kB]
Get: 231 http://deb.debian.org/debian trixie/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB]
Get: 232 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 233 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 234 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 235 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 236 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 237 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 238 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 239 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 240 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 241 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 242 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 243 http://deb.debian.org/debian trixie/main arm64 meson all 1.7.0-1 [639 kB]
Get: 244 http://deb.debian.org/debian trixie/main arm64 sysstat arm64 12.7.5-2+b1 [596 kB]
Get: 245 http://deb.debian.org/debian trixie/main arm64 parallel all 20240222+ds-2 [2163 kB]
Get: 246 http://deb.debian.org/debian trixie/main arm64 samtools arm64 1.21-1 [637 kB]
Fetched 132 MB in 1s (98.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:arm64.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19923 files and directories currently installed.)
Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ...
Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ...
Unpacking python3.13-minimal (3.13.2-1) ...
Setting up libpython3.13-minimal:arm64 (3.13.2-1) ...
Setting up libexpat1:arm64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.2-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20257 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ...
Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2025a-2_all.deb ...
Unpacking tzdata (2025a-2) ...
Selecting previously unselected package libffi8:arm64.
Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ...
Unpacking libffi8:arm64 (3.4.7-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../5-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:arm64.
Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:arm64 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:arm64.
Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ...
Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ...
Unpacking python3.13 (3.13.2-1) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21267 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package libproc2-0:arm64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_arm64.deb ...
Unpacking libproc2-0:arm64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-7_arm64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package openssl.
Preparing to unpack .../004-openssl_3.4.1-1_arm64.deb ...
Unpacking openssl (3.4.1-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../005-ca-certificates_20241223_all.deb ...
Unpacking ca-certificates (20241223) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:arm64.
Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../008-file_1%3a5.45-3+b1_arm64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../009-gettext-base_0.23.1-1_arm64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../011-groff-base_1.23.0-7_arm64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../012-bsdextrautils_2.40.4-3_arm64.deb ...
Unpacking bsdextrautils (2.40.4-3) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../013-libpipeline1_1.5.8-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../014-man-db_2.13.0-1_arm64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package libtext-charwidth-perl:arm64.
Preparing to unpack .../015-libtext-charwidth-perl_0.04-11+b4_arm64.deb ...
Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../016-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../017-ucf_3.0049_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0049) ...
Selecting previously unselected package m4.
Preparing to unpack .../018-m4_1.4.19-5_arm64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../019-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../021-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../022-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package bc.
Preparing to unpack .../023-bc_1.07.1-4+b1_arm64.deb ...
Unpacking bc (1.07.1-4+b1) ...
Selecting previously unselected package libcom-err2:arm64.
Preparing to unpack .../024-libcom-err2_1.47.2-1_arm64.deb ...
Unpacking libcom-err2:arm64 (1.47.2-1) ...
Selecting previously unselected package comerr-dev:arm64.
Preparing to unpack .../025-comerr-dev_2.1-1.47.2-1_arm64.deb ...
Unpacking comerr-dev:arm64 (2.1-1.47.2-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../026-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../027-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../028-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../029-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../030-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../031-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../032-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../033-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:arm64.
Preparing to unpack .../034-libunistring5_1.3-1_arm64.deb ...
Unpacking libunistring5:arm64 (1.3-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../035-libicu72_72.1-6_arm64.deb ...
Unpacking libicu72:arm64 (72.1-6) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../036-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ...
Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../037-gettext_0.23.1-1_arm64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../038-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../039-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../040-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libbrotli1:arm64.
Preparing to unpack .../041-libbrotli1_1.1.0-2+b6_arm64.deb ...
Unpacking libbrotli1:arm64 (1.1.0-2+b6) ...
Selecting previously unselected package libpng16-16t64:arm64.
Preparing to unpack .../042-libpng16-16t64_1.6.46-4_arm64.deb ...
Unpacking libpng16-16t64:arm64 (1.6.46-4) ...
Selecting previously unselected package libfreetype6:arm64.
Preparing to unpack .../043-libfreetype6_2.13.3+dfsg-1_arm64.deb ...
Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../044-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../045-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../046-fontconfig-config_2.15.0-2_arm64.deb ...
Unpacking fontconfig-config (2.15.0-2) ...
Selecting previously unselected package libfontconfig1:arm64.
Preparing to unpack .../047-libfontconfig1_2.15.0-2_arm64.deb ...
Unpacking libfontconfig1:arm64 (2.15.0-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../048-fontconfig_2.15.0-2_arm64.deb ...
Unpacking fontconfig (2.15.0-2) ...
Selecting previously unselected package libkrb5support0:arm64.
Preparing to unpack .../049-libkrb5support0_1.21.3-4_arm64.deb ...
Unpacking libkrb5support0:arm64 (1.21.3-4) ...
Selecting previously unselected package libk5crypto3:arm64.
Preparing to unpack .../050-libk5crypto3_1.21.3-4_arm64.deb ...
Unpacking libk5crypto3:arm64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:arm64.
Preparing to unpack .../051-libkeyutils1_1.6.3-4_arm64.deb ...
Unpacking libkeyutils1:arm64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:arm64.
Preparing to unpack .../052-libkrb5-3_1.21.3-4_arm64.deb ...
Unpacking libkrb5-3:arm64 (1.21.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:arm64.
Preparing to unpack .../053-libgssapi-krb5-2_1.21.3-4_arm64.deb ...
Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ...
Selecting previously unselected package libgssrpc4t64:arm64.
Preparing to unpack .../054-libgssrpc4t64_1.21.3-4_arm64.deb ...
Unpacking libgssrpc4t64:arm64 (1.21.3-4) ...
Selecting previously unselected package libkadm5clnt-mit12:arm64.
Preparing to unpack .../055-libkadm5clnt-mit12_1.21.3-4_arm64.deb ...
Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4) ...
Selecting previously unselected package libkdb5-10t64:arm64.
Preparing to unpack .../056-libkdb5-10t64_1.21.3-4_arm64.deb ...
Unpacking libkdb5-10t64:arm64 (1.21.3-4) ...
Selecting previously unselected package libkadm5srv-mit12:arm64.
Preparing to unpack .../057-libkadm5srv-mit12_1.21.3-4_arm64.deb ...
Unpacking libkadm5srv-mit12:arm64 (1.21.3-4) ...
Selecting previously unselected package krb5-multidev:arm64.
Preparing to unpack .../058-krb5-multidev_1.21.3-4_arm64.deb ...
Unpacking krb5-multidev:arm64 (1.21.3-4) ...
Selecting previously unselected package libbamtools2.5.2:arm64.
Preparing to unpack .../059-libbamtools2.5.2_2.5.2+dfsg-6+b1_arm64.deb ...
Unpacking libbamtools2.5.2:arm64 (2.5.2+dfsg-6+b1) ...
Selecting previously unselected package zlib1g-dev:arm64.
Preparing to unpack .../060-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ...
Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package libbamtools-dev:arm64.
Preparing to unpack .../061-libbamtools-dev_2.5.2+dfsg-6+b1_arm64.deb ...
Unpacking libbamtools-dev:arm64 (2.5.2+dfsg-6+b1) ...
Selecting previously unselected package libblas3:arm64.
Preparing to unpack .../062-libblas3_3.12.1-2_arm64.deb ...
Unpacking libblas3:arm64 (3.12.1-2) ...
Selecting previously unselected package libbrotli-dev:arm64.
Preparing to unpack .../063-libbrotli-dev_1.1.0-2+b6_arm64.deb ...
Unpacking libbrotli-dev:arm64 (1.1.0-2+b6) ...
Selecting previously unselected package libbwa-dev.
Preparing to unpack .../064-libbwa-dev_0.7.18-1_arm64.deb ...
Unpacking libbwa-dev (0.7.18-1) ...
Selecting previously unselected package libbz2-dev:arm64.
Preparing to unpack .../065-libbz2-dev_1.0.8-6_arm64.deb ...
Unpacking libbz2-dev:arm64 (1.0.8-6) ...
Selecting previously unselected package libpixman-1-0:arm64.
Preparing to unpack .../066-libpixman-1-0_0.44.0-3_arm64.deb ...
Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
Selecting previously unselected package libxau6:arm64.
Preparing to unpack .../067-libxau6_1%3a1.0.11-1_arm64.deb ...
Unpacking libxau6:arm64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:arm64.
Preparing to unpack .../068-libxdmcp6_1%3a1.1.5-1_arm64.deb ...
Unpacking libxdmcp6:arm64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:arm64.
Preparing to unpack .../069-libxcb1_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb1:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../070-libx11-data_2%3a1.8.10-2_all.deb ...
Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:arm64.
Preparing to unpack .../071-libx11-6_2%3a1.8.10-2_arm64.deb ...
Unpacking libx11-6:arm64 (2:1.8.10-2) ...
Selecting previously unselected package libxcb-render0:arm64.
Preparing to unpack .../072-libxcb-render0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:arm64.
Preparing to unpack .../073-libxcb-shm0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:arm64.
Preparing to unpack .../074-libxext6_2%3a1.3.4-1+b3_arm64.deb ...
Unpacking libxext6:arm64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender1:arm64.
Preparing to unpack .../075-libxrender1_1%3a0.9.10-1.1+b4_arm64.deb ...
Unpacking libxrender1:arm64 (1:0.9.10-1.1+b4) ...
Selecting previously unselected package libcairo2:arm64.
Preparing to unpack .../076-libcairo2_1.18.2-2_arm64.deb ...
Unpacking libcairo2:arm64 (1.18.2-2) ...
Selecting previously unselected package libidn2-0:arm64.
Preparing to unpack .../077-libidn2-0_2.3.7-2+b1_arm64.deb ...
Unpacking libidn2-0:arm64 (2.3.7-2+b1) ...
Selecting previously unselected package libp11-kit0:arm64.
Preparing to unpack .../078-libp11-kit0_0.25.5-3_arm64.deb ...
Unpacking libp11-kit0:arm64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:arm64.
Preparing to unpack .../079-libtasn1-6_4.20.0-2_arm64.deb ...
Unpacking libtasn1-6:arm64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:arm64.
Preparing to unpack .../080-libgnutls30t64_3.8.9-2_arm64.deb ...
Unpacking libgnutls30t64:arm64 (3.8.9-2) ...
Selecting previously unselected package libsasl2-modules-db:arm64.
Preparing to unpack .../081-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ...
Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libsasl2-2:arm64.
Preparing to unpack .../082-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ...
Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libldap2:arm64.
Preparing to unpack .../083-libldap2_2.6.9+dfsg-1_arm64.deb ...
Unpacking libldap2:arm64 (2.6.9+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:arm64.
Preparing to unpack .../084-libnghttp2-14_1.64.0-1_arm64.deb ...
Unpacking libnghttp2-14:arm64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:arm64.
Preparing to unpack .../085-libnghttp3-9_1.6.0-2_arm64.deb ...
Unpacking libnghttp3-9:arm64 (1.6.0-2) ...
Selecting previously unselected package libngtcp2-16:arm64.
Preparing to unpack .../086-libngtcp2-16_1.9.1-1_arm64.deb ...
Unpacking libngtcp2-16:arm64 (1.9.1-1) ...
Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64.
Preparing to unpack .../087-libngtcp2-crypto-gnutls8_1.9.1-1_arm64.deb ...
Unpacking libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ...
Selecting previously unselected package libpsl5t64:arm64.
Preparing to unpack .../088-libpsl5t64_0.21.2-1.1+b1_arm64.deb ...
Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp1:arm64.
Preparing to unpack .../089-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ...
Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:arm64.
Preparing to unpack .../090-libssh2-1t64_1.11.1-1_arm64.deb ...
Unpacking libssh2-1t64:arm64 (1.11.1-1) ...
Selecting previously unselected package libcurl3t64-gnutls:arm64.
Preparing to unpack .../091-libcurl3t64-gnutls_8.12.0+git20250209.89ed161+ds-1_arm64.deb ...
Unpacking libcurl3t64-gnutls:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
Selecting previously unselected package libevent-2.1-7t64:arm64.
Preparing to unpack .../092-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ...
Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ...
Selecting previously unselected package libunbound8:arm64.
Preparing to unpack .../093-libunbound8_1.22.0-1+b1_arm64.deb ...
Unpacking libunbound8:arm64 (1.22.0-1+b1) ...
Selecting previously unselected package libgnutls-dane0t64:arm64.
Preparing to unpack .../094-libgnutls-dane0t64_3.8.9-2_arm64.deb ...
Unpacking libgnutls-dane0t64:arm64 (3.8.9-2) ...
Selecting previously unselected package libgnutls-openssl27t64:arm64.
Preparing to unpack .../095-libgnutls-openssl27t64_3.8.9-2_arm64.deb ...
Unpacking libgnutls-openssl27t64:arm64 (3.8.9-2) ...
Selecting previously unselected package libidn2-dev:arm64.
Preparing to unpack .../096-libidn2-dev_2.3.7-2+b1_arm64.deb ...
Unpacking libidn2-dev:arm64 (2.3.7-2+b1) ...
Selecting previously unselected package libp11-kit-dev:arm64.
Preparing to unpack .../097-libp11-kit-dev_0.25.5-3_arm64.deb ...
Unpacking libp11-kit-dev:arm64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6-dev:arm64.
Preparing to unpack .../098-libtasn1-6-dev_4.20.0-2_arm64.deb ...
Unpacking libtasn1-6-dev:arm64 (4.20.0-2) ...
Selecting previously unselected package libgmpxx4ldbl:arm64.
Preparing to unpack .../099-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_arm64.deb ...
Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ...
Selecting previously unselected package libgmp-dev:arm64.
Preparing to unpack .../100-libgmp-dev_2%3a6.3.0+dfsg-3_arm64.deb ...
Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-3) ...
Selecting previously unselected package nettle-dev:arm64.
Preparing to unpack .../101-nettle-dev_3.10-1+b1_arm64.deb ...
Unpacking nettle-dev:arm64 (3.10-1+b1) ...
Selecting previously unselected package libgnutls28-dev:arm64.
Preparing to unpack .../102-libgnutls28-dev_3.8.9-2_arm64.deb ...
Unpacking libgnutls28-dev:arm64 (3.8.9-2) ...
Selecting previously unselected package libkrb5-dev:arm64.
Preparing to unpack .../103-libkrb5-dev_1.21.3-4_arm64.deb ...
Unpacking libkrb5-dev:arm64 (1.21.3-4) ...
Selecting previously unselected package libldap-dev:arm64.
Preparing to unpack .../104-libldap-dev_2.6.9+dfsg-1_arm64.deb ...
Unpacking libldap-dev:arm64 (2.6.9+dfsg-1) ...
Selecting previously unselected package libpkgconf3:arm64.
Preparing to unpack .../105-libpkgconf3_1.8.1-4_arm64.deb ...
Unpacking libpkgconf3:arm64 (1.8.1-4) ...
Selecting previously unselected package pkgconf-bin.
Preparing to unpack .../106-pkgconf-bin_1.8.1-4_arm64.deb ...
Unpacking pkgconf-bin (1.8.1-4) ...
Selecting previously unselected package pkgconf:arm64.
Preparing to unpack .../107-pkgconf_1.8.1-4_arm64.deb ...
Unpacking pkgconf:arm64 (1.8.1-4) ...
Selecting previously unselected package libnghttp2-dev:arm64.
Preparing to unpack .../108-libnghttp2-dev_1.64.0-1_arm64.deb ...
Unpacking libnghttp2-dev:arm64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-dev:arm64.
Preparing to unpack .../109-libnghttp3-dev_1.6.0-2_arm64.deb ...
Unpacking libnghttp3-dev:arm64 (1.6.0-2) ...
Selecting previously unselected package libngtcp2-crypto-gnutls-dev:arm64.
Preparing to unpack .../110-libngtcp2-crypto-gnutls-dev_1.9.1-1_arm64.deb ...
Unpacking libngtcp2-crypto-gnutls-dev:arm64 (1.9.1-1) ...
Selecting previously unselected package libngtcp2-dev:arm64.
Preparing to unpack .../111-libngtcp2-dev_1.9.1-1_arm64.deb ...
Unpacking libngtcp2-dev:arm64 (1.9.1-1) ...
Selecting previously unselected package libpsl-dev:arm64.
Preparing to unpack .../112-libpsl-dev_0.21.2-1.1+b1_arm64.deb ...
Unpacking libpsl-dev:arm64 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp-dev:arm64.
Preparing to unpack .../113-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ...
Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssl-dev:arm64.
Preparing to unpack .../114-libssl-dev_3.4.1-1_arm64.deb ...
Unpacking libssl-dev:arm64 (3.4.1-1) ...
Selecting previously unselected package libssh2-1-dev:arm64.
Preparing to unpack .../115-libssh2-1-dev_1.11.1-1_arm64.deb ...
Unpacking libssh2-1-dev:arm64 (1.11.1-1) ...
Selecting previously unselected package libzstd-dev:arm64.
Preparing to unpack .../116-libzstd-dev_1.5.6+dfsg-2_arm64.deb ...
Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ...
Selecting previously unselected package libcurl4-gnutls-dev:arm64.
Preparing to unpack .../117-libcurl4-gnutls-dev_8.12.0+git20250209.89ed161+ds-1_arm64.deb ...
Unpacking libcurl4-gnutls-dev:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
Selecting previously unselected package libcurl4t64:arm64.
Preparing to unpack .../118-libcurl4t64_8.12.0+git20250209.89ed161+ds-1_arm64.deb ...
Unpacking libcurl4t64:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
Selecting previously unselected package libdatrie1:arm64.
Preparing to unpack .../119-libdatrie1_0.2.13-3+b1_arm64.deb ...
Unpacking libdatrie1:arm64 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate0:arm64.
Preparing to unpack .../120-libdeflate0_1.23-1+b1_arm64.deb ...
Unpacking libdeflate0:arm64 (1.23-1+b1) ...
Selecting previously unselected package libdeflate-dev:arm64.
Preparing to unpack .../121-libdeflate-dev_1.23-1+b1_arm64.deb ...
Unpacking libdeflate-dev:arm64 (1.23-1+b1) ...
Selecting previously unselected package libdisorder0:arm64.
Preparing to unpack .../122-libdisorder0_0.0.2+git20130809.8062ee1-4+b2_arm64.deb ...
Unpacking libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4+b2) ...
Selecting previously unselected package libdisorder-dev:arm64.
Preparing to unpack .../123-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2_arm64.deb ...
Unpacking libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b2) ...
Selecting previously unselected package libfastahack0:arm64.
Preparing to unpack .../124-libfastahack0_1.0.0+dfsg-11+b2_arm64.deb ...
Unpacking libfastahack0:arm64 (1.0.0+dfsg-11+b2) ...
Selecting previously unselected package libfastahack-dev:arm64.
Preparing to unpack .../125-libfastahack-dev_1.0.0+dfsg-11+b2_arm64.deb ...
Unpacking libfastahack-dev:arm64 (1.0.0+dfsg-11+b2) ...
Selecting previously unselected package libfml0:arm64.
Preparing to unpack .../126-libfml0_0.1+git20221215.85f159e-1_arm64.deb ...
Unpacking libfml0:arm64 (0.1+git20221215.85f159e-1) ...
Selecting previously unselected package libfml-dev:arm64.
Preparing to unpack .../127-libfml-dev_0.1+git20221215.85f159e-1_arm64.deb ...
Unpacking libfml-dev:arm64 (0.1+git20221215.85f159e-1) ...
Selecting previously unselected package libfribidi0:arm64.
Preparing to unpack .../128-libfribidi0_1.0.16-1_arm64.deb ...
Unpacking libfribidi0:arm64 (1.0.16-1) ...
Selecting previously unselected package libgfortran5:arm64.
Preparing to unpack .../129-libgfortran5_14.2.0-16_arm64.deb ...
Unpacking libgfortran5:arm64 (14.2.0-16) ...
Selecting previously unselected package libglib2.0-0t64:arm64.
Preparing to unpack .../130-libglib2.0-0t64_2.83.3-2_arm64.deb ...
Unpacking libglib2.0-0t64:arm64 (2.83.3-2) ...
Selecting previously unselected package libgraphite2-3:arm64.
Preparing to unpack .../131-libgraphite2-3_1.3.14-2+b1_arm64.deb ...
Unpacking libgraphite2-3:arm64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:arm64.
Preparing to unpack .../132-libharfbuzz0b_10.2.0-1_arm64.deb ...
Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
Selecting previously unselected package libhtscodecs2:arm64.
Preparing to unpack .../133-libhtscodecs2_1.6.1-1_arm64.deb ...
Unpacking libhtscodecs2:arm64 (1.6.1-1) ...
Selecting previously unselected package libhts3t64:arm64.
Preparing to unpack .../134-libhts3t64_1.21+ds-1_arm64.deb ...
Unpacking libhts3t64:arm64 (1.21+ds-1) ...
Selecting previously unselected package liblzma-dev:arm64.
Preparing to unpack .../135-liblzma-dev_5.6.3-1+b1_arm64.deb ...
Unpacking liblzma-dev:arm64 (5.6.3-1+b1) ...
Selecting previously unselected package libhts-dev:arm64.
Preparing to unpack .../136-libhts-dev_1.21+ds-1_arm64.deb ...
Unpacking libhts-dev:arm64 (1.21+ds-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../137-x11-common_1%3a7.7+24_all.deb ...
Unpacking x11-common (1:7.7+24) ...
Selecting previously unselected package libice6:arm64.
Preparing to unpack .../138-libice6_2%3a1.1.1-1_arm64.deb ...
Unpacking libice6:arm64 (2:1.1.1-1) ...
Selecting previously unselected package libjbig0:arm64.
Preparing to unpack .../139-libjbig0_2.1-6.1+b2_arm64.deb ...
Unpacking libjbig0:arm64 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:arm64.
Preparing to unpack .../140-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ...
Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ...
Selecting previously unselected package libjsoncpp26:arm64.
Preparing to unpack .../141-libjsoncpp26_1.9.6-3_arm64.deb ...
Unpacking libjsoncpp26:arm64 (1.9.6-3) ...
Selecting previously unselected package libjsoncpp-dev:arm64.
Preparing to unpack .../142-libjsoncpp-dev_1.9.6-3_arm64.deb ...
Unpacking libjsoncpp-dev:arm64 (1.9.6-3) ...
Selecting previously unselected package liblapack3:arm64.
Preparing to unpack .../143-liblapack3_3.12.1-2_arm64.deb ...
Unpacking liblapack3:arm64 (3.12.1-2) ...
Selecting previously unselected package liblerc4:arm64.
Preparing to unpack .../144-liblerc4_4.0.0+ds-5_arm64.deb ...
Unpacking liblerc4:arm64 (4.0.0+ds-5) ...
Selecting previously unselected package libncurses6:arm64.
Preparing to unpack .../145-libncurses6_6.5+20250125-2_arm64.deb ...
Unpacking libncurses6:arm64 (6.5+20250125-2) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../146-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libthai0:arm64.
Preparing to unpack .../147-libthai0_0.1.29-2+b1_arm64.deb ...
Unpacking libthai0:arm64 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:arm64.
Preparing to unpack .../148-libpango-1.0-0_1.56.1-1_arm64.deb ...
Unpacking libpango-1.0-0:arm64 (1.56.1-1) ...
Selecting previously unselected package libpangoft2-1.0-0:arm64.
Preparing to unpack .../149-libpangoft2-1.0-0_1.56.1-1_arm64.deb ...
Unpacking libpangoft2-1.0-0:arm64 (1.56.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:arm64.
Preparing to unpack .../150-libpangocairo-1.0-0_1.56.1-1_arm64.deb ...
Unpacking libpangocairo-1.0-0:arm64 (1.56.1-1) ...
Selecting previously unselected package libpaper2:arm64.
Preparing to unpack .../151-libpaper2_2.2.5-0.3+b1_arm64.deb ...
Unpacking libpaper2:arm64 (2.2.5-0.3+b1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../152-libpaper-utils_2.2.5-0.3+b1_arm64.deb ...
Unpacking libpaper-utils (2.2.5-0.3+b1) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../153-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:arm64.
Preparing to unpack .../154-libsensors5_1%3a3.6.0-10+b1_arm64.deb ...
Unpacking libsensors5:arm64 (1:3.6.0-10+b1) ...
Selecting previously unselected package libssw0:arm64.
Preparing to unpack .../155-libssw0_1.1-15+b2_arm64.deb ...
Unpacking libssw0:arm64 (1.1-15+b2) ...
Selecting previously unselected package libseqlib2:arm64.
Preparing to unpack .../156-libseqlib2_1.2.0+dfsg-11+b3_arm64.deb ...
Unpacking libseqlib2:arm64 (1.2.0+dfsg-11+b3) ...
Selecting previously unselected package libssw-dev:arm64.
Preparing to unpack .../157-libssw-dev_1.1-15+b2_arm64.deb ...
Unpacking libssw-dev:arm64 (1.1-15+b2) ...
Selecting previously unselected package libseqlib-dev:arm64.
Preparing to unpack .../158-libseqlib-dev_1.2.0+dfsg-11+b3_arm64.deb ...
Unpacking libseqlib-dev:arm64 (1.2.0+dfsg-11+b3) ...
Selecting previously unselected package libsharpyuv0:arm64.
Preparing to unpack .../159-libsharpyuv0_1.5.0-0.1_arm64.deb ...
Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
Selecting previously unselected package libsm6:arm64.
Preparing to unpack .../160-libsm6_2%3a1.2.4-1_arm64.deb ...
Unpacking libsm6:arm64 (2:1.2.4-1) ...
Selecting previously unselected package libsmithwaterman0:arm64.
Preparing to unpack .../161-libsmithwaterman0_0.0+git20160702.2610e25-12+b2_arm64.deb ...
Unpacking libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12+b2) ...
Selecting previously unselected package libsmithwaterman-dev:arm64.
Preparing to unpack .../162-libsmithwaterman-dev_0.0+git20160702.2610e25-12+b2_arm64.deb ...
Unpacking libsmithwaterman-dev:arm64 (0.0+git20160702.2610e25-12+b2) ...
Selecting previously unselected package libtabixpp0t64:arm64.
Preparing to unpack .../163-libtabixpp0t64_1.1.2-2.1+b1_arm64.deb ...
Unpacking libtabixpp0t64:arm64 (1.1.2-2.1+b1) ...
Selecting previously unselected package libtabixpp-dev:arm64.
Preparing to unpack .../164-libtabixpp-dev_1.1.2-2.1+b1_arm64.deb ...
Unpacking libtabixpp-dev:arm64 (1.1.2-2.1+b1) ...
Selecting previously unselected package libtcl8.6:arm64.
Preparing to unpack .../165-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
Selecting previously unselected package libwebp7:arm64.
Preparing to unpack .../166-libwebp7_1.5.0-0.1_arm64.deb ...
Unpacking libwebp7:arm64 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:arm64.
Preparing to unpack .../167-libtiff6_4.5.1+git230720-5_arm64.deb ...
Unpacking libtiff6:arm64 (4.5.1+git230720-5) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../168-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:arm64.
Preparing to unpack .../169-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libxft2:arm64.
Preparing to unpack .../170-libxft2_2.3.6-1+b4_arm64.deb ...
Unpacking libxft2:arm64 (2.3.6-1+b4) ...
Selecting previously unselected package libxss1:arm64.
Preparing to unpack .../171-libxss1_1%3a1.2.3-1+b3_arm64.deb ...
Unpacking libxss1:arm64 (1:1.2.3-1+b3) ...
Selecting previously unselected package libtk8.6:arm64.
Preparing to unpack .../172-libtk8.6_8.6.16-1_arm64.deb ...
Unpacking libtk8.6:arm64 (8.6.16-1) ...
Selecting previously unselected package libwfa2-0:arm64.
Preparing to unpack .../173-libwfa2-0_2.3.3-4+b2_arm64.deb ...
Unpacking libwfa2-0:arm64 (2.3.3-4+b2) ...
Selecting previously unselected package libvcflib2:arm64.
Preparing to unpack .../174-libvcflib2_1.0.12+dfsg-1_arm64.deb ...
Unpacking libvcflib2:arm64 (1.0.12+dfsg-1) ...
Selecting previously unselected package libwfa2-dev.
Preparing to unpack .../175-libwfa2-dev_2.3.3-4+b2_arm64.deb ...
Unpacking libwfa2-dev (2.3.3-4+b2) ...
Selecting previously unselected package libvcflib-dev:arm64.
Preparing to unpack .../176-libvcflib-dev_1.0.12+dfsg-1_arm64.deb ...
Unpacking libvcflib-dev:arm64 (1.0.12+dfsg-1) ...
Selecting previously unselected package zip.
Preparing to unpack .../177-zip_3.0-14+b1_arm64.deb ...
Unpacking zip (3.0-14+b1) ...
Selecting previously unselected package unzip.
Preparing to unpack .../178-unzip_6.0-28+b1_arm64.deb ...
Unpacking unzip (6.0-28+b1) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../179-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package libxt6t64:arm64.
Preparing to unpack .../180-libxt6t64_1%3a1.2.1-1.2+b2_arm64.deb ...
Unpacking libxt6t64:arm64 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../181-r-base-core_4.4.2-1_arm64.deb ...
Unpacking r-base-core (4.4.2-1) ...
Selecting previously unselected package r-cran-littler.
Preparing to unpack .../182-r-cran-littler_0.3.20-2_arm64.deb ...
Unpacking r-cran-littler (0.3.20-2) ...
Selecting previously unselected package littler.
Preparing to unpack .../183-littler_0.3.20-2_all.deb ...
Unpacking littler (0.3.20-2) ...
Selecting previously unselected package r-cran-pkgkitten.
Preparing to unpack .../184-r-cran-pkgkitten_0.2.4-1_all.deb ...
Unpacking r-cran-pkgkitten (0.2.4-1) ...
Selecting previously unselected package r-cran-rcpp.
Preparing to unpack .../185-r-cran-rcpp_1.0.14-1_arm64.deb ...
Unpacking r-cran-rcpp (1.0.14-1) ...
Selecting previously unselected package r-cran-plyr.
Preparing to unpack .../186-r-cran-plyr_1.8.9-1+b1_arm64.deb ...
Unpacking r-cran-plyr (1.8.9-1+b1) ...
Selecting previously unselected package r-cran-cli.
Preparing to unpack .../187-r-cran-cli_3.6.3-1_arm64.deb ...
Unpacking r-cran-cli (3.6.3-1) ...
Selecting previously unselected package r-cran-glue.
Preparing to unpack .../188-r-cran-glue_1.8.0-1_arm64.deb ...
Unpacking r-cran-glue (1.8.0-1) ...
Selecting previously unselected package r-cran-rlang.
Preparing to unpack .../189-r-cran-rlang_1.1.5-1_arm64.deb ...
Unpacking r-cran-rlang (1.1.5-1) ...
Selecting previously unselected package r-cran-lifecycle.
Preparing to unpack .../190-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
Selecting previously unselected package r-cran-gtable.
Preparing to unpack .../191-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
Selecting previously unselected package r-cran-isoband.
Preparing to unpack .../192-r-cran-isoband_0.2.7-1+b1_arm64.deb ...
Unpacking r-cran-isoband (0.2.7-1+b1) ...
Selecting previously unselected package r-cran-mass.
Preparing to unpack .../193-r-cran-mass_7.3-64-1_arm64.deb ...
Unpacking r-cran-mass (7.3-64-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../194-r-cran-lattice_0.22-6-1+b1_arm64.deb ...
Unpacking r-cran-lattice (0.22-6-1+b1) ...
Selecting previously unselected package r-cran-nlme.
Preparing to unpack .../195-r-cran-nlme_3.1.167-1_arm64.deb ...
Unpacking r-cran-nlme (3.1.167-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../196-r-cran-matrix_1.7-2-1_arm64.deb ...
Unpacking r-cran-matrix (1.7-2-1) ...
Selecting previously unselected package r-cran-mgcv.
Preparing to unpack .../197-r-cran-mgcv_1.9-1-1+b1_arm64.deb ...
Unpacking r-cran-mgcv (1.9-1-1+b1) ...
Selecting previously unselected package r-cran-farver.
Preparing to unpack .../198-r-cran-farver_2.1.2-1+b1_arm64.deb ...
Unpacking r-cran-farver (2.1.2-1+b1) ...
Selecting previously unselected package r-cran-labeling.
Preparing to unpack .../199-r-cran-labeling_0.4.3-1_all.deb ...
Unpacking r-cran-labeling (0.4.3-1) ...
Selecting previously unselected package r-cran-colorspace.
Preparing to unpack .../200-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ...
Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
Selecting previously unselected package r-cran-munsell.
Preparing to unpack .../201-r-cran-munsell_0.5.1-1_all.deb ...
Unpacking r-cran-munsell (0.5.1-1) ...
Selecting previously unselected package r-cran-r6.
Preparing to unpack .../202-r-cran-r6_2.5.1-1_all.deb ...
Unpacking r-cran-r6 (2.5.1-1) ...
Selecting previously unselected package r-cran-rcolorbrewer.
Preparing to unpack .../203-r-cran-rcolorbrewer_1.1-3-1_all.deb ...
Unpacking r-cran-rcolorbrewer (1.1-3-1) ...
Selecting previously unselected package r-cran-viridislite.
Preparing to unpack .../204-r-cran-viridislite_0.4.2-2_all.deb ...
Unpacking r-cran-viridislite (0.4.2-2) ...
Selecting previously unselected package r-cran-scales.
Preparing to unpack .../205-r-cran-scales_1.3.0-1_all.deb ...
Unpacking r-cran-scales (1.3.0-1) ...
Selecting previously unselected package r-cran-fansi.
Preparing to unpack .../206-r-cran-fansi_1.0.5-1+b1_arm64.deb ...
Unpacking r-cran-fansi (1.0.5-1+b1) ...
Selecting previously unselected package r-cran-magrittr.
Preparing to unpack .../207-r-cran-magrittr_2.0.3-1+b1_arm64.deb ...
Unpacking r-cran-magrittr (2.0.3-1+b1) ...
Selecting previously unselected package r-cran-utf8.
Preparing to unpack .../208-r-cran-utf8_1.2.4-1+b1_arm64.deb ...
Unpacking r-cran-utf8 (1.2.4-1+b1) ...
Selecting previously unselected package r-cran-vctrs.
Preparing to unpack .../209-r-cran-vctrs_0.6.5-1+b1_arm64.deb ...
Unpacking r-cran-vctrs (0.6.5-1+b1) ...
Selecting previously unselected package r-cran-pillar.
Preparing to unpack .../210-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
Selecting previously unselected package r-cran-pkgconfig.
Preparing to unpack .../211-r-cran-pkgconfig_2.0.3-2_all.deb ...
Unpacking r-cran-pkgconfig (2.0.3-2) ...
Selecting previously unselected package r-cran-tibble.
Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ...
Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
Selecting previously unselected package r-cran-withr.
Preparing to unpack .../213-r-cran-withr_3.0.2+dfsg-1_all.deb ...
Unpacking r-cran-withr (3.0.2+dfsg-1) ...
Selecting previously unselected package r-cran-ggplot2.
Preparing to unpack .../214-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
Selecting previously unselected package r-cran-gridbase.
Preparing to unpack .../215-r-cran-gridbase_0.4-7-5_all.deb ...
Unpacking r-cran-gridbase (0.4-7-5) ...
Selecting previously unselected package libvcflib-tools.
Preparing to unpack .../216-libvcflib-tools_1.0.12+dfsg-1_arm64.deb ...
Unpacking libvcflib-tools (1.0.12+dfsg-1) ...
Selecting previously unselected package ninja-build.
Preparing to unpack .../217-ninja-build_1.12.1-1+b1_arm64.deb ...
Unpacking ninja-build (1.12.1-1+b1) ...
Selecting previously unselected package python3-autocommand.
Preparing to unpack .../218-python3-autocommand_2.2.2-3_all.deb ...
Unpacking python3-autocommand (2.2.2-3) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../219-python3-more-itertools_10.6.0-1_all.deb ...
Unpacking python3-more-itertools (10.6.0-1) ...
Selecting previously unselected package python3-typing-extensions.
Preparing to unpack .../220-python3-typing-extensions_4.12.2-2_all.deb ...
Unpacking python3-typing-extensions (4.12.2-2) ...
Selecting previously unselected package python3-typeguard.
Preparing to unpack .../221-python3-typeguard_4.4.1-1_all.deb ...
Unpacking python3-typeguard (4.4.1-1) ...
Selecting previously unselected package python3-inflect.
Preparing to unpack .../222-python3-inflect_7.3.1-2_all.deb ...
Unpacking python3-inflect (7.3.1-2) ...
Selecting previously unselected package python3-jaraco.context.
Preparing to unpack .../223-python3-jaraco.context_6.0.0-1_all.deb ...
Unpacking python3-jaraco.context (6.0.0-1) ...
Selecting previously unselected package python3-jaraco.functools.
Preparing to unpack .../224-python3-jaraco.functools_4.1.0-1_all.deb ...
Unpacking python3-jaraco.functools (4.1.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../225-python3-pkg-resources_75.6.0-1_all.deb ...
Unpacking python3-pkg-resources (75.6.0-1) ...
Selecting previously unselected package python3-jaraco.text.
Preparing to unpack .../226-python3-jaraco.text_4.0.0-1_all.deb ...
Unpacking python3-jaraco.text (4.0.0-1) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../227-python3-zipp_3.21.0-1_all.deb ...
Unpacking python3-zipp (3.21.0-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../228-python3-setuptools_75.6.0-1_all.deb ...
Unpacking python3-setuptools (75.6.0-1) ...
Selecting previously unselected package meson.
Preparing to unpack .../229-meson_1.7.0-1_all.deb ...
Unpacking meson (1.7.0-1) ...
Selecting previously unselected package sysstat.
Preparing to unpack .../230-sysstat_12.7.5-2+b1_arm64.deb ...
Unpacking sysstat (12.7.5-2+b1) ...
Selecting previously unselected package parallel.
Preparing to unpack .../231-parallel_20240222+ds-2_all.deb ...
Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel'
Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel'
Unpacking parallel (20240222+ds-2) ...
Selecting previously unselected package samtools.
Preparing to unpack .../232-samtools_1.21-1_arm64.deb ...
Unpacking samtools (1.21-1) ...
Setting up libhtscodecs2:arm64 (1.6.1-1) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ...
Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4+b2) ...
Setting up libpixman-1-0:arm64 (0.44.0-3) ...
Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ...
Setting up libwfa2-0:arm64 (2.3.3-4+b2) ...
Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
Setting up libxau6:arm64 (1:1.0.11-1) ...
Setting up libxdmcp6:arm64 (1:1.1.5-1) ...
Setting up libkeyutils1:arm64 (1.6.3-4) ...
Setting up libxcb1:arm64 (1.17.0-2+b1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ...
Setting up liblerc4:arm64 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-3) ...
Setting up libdatrie1:arm64 (0.2.13-3+b1) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:arm64 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up unzip (6.0-28+b1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:arm64 (1.1.0-2+b6) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libsensors-config (1:3.6.0-10) ...
Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12+b2) ...
Setting up libnghttp2-14:arm64 (1.64.0-1) ...
Setting up libdeflate0:arm64 (1.23-1+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ...
Setting up libwfa2-dev (2.3.3-4+b2) ...
Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ...
Setting up libcom-err2:arm64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libfml0:arm64 (0.1+git20221215.85f159e-1) ...
Setting up libfastahack0:arm64 (1.0.0+dfsg-11+b2) ...
Setting up libjbig0:arm64 (2.1-6.1+b2) ...
Setting up ninja-build (1.12.1-1+b1) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libkrb5support0:arm64 (1.21.3-4) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up libfastahack-dev:arm64 (1.0.0+dfsg-11+b2) ...
Setting up tzdata (2025a-2) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Thu Mar 26 05:05:42 UTC 2026.
Universal Time is now:  Thu Mar 26 05:05:42 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up zip (3.0-14+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:arm64 (3.12.1-2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up libunbound8:arm64 (1.22.0-1+b1) ...
Setting up libpkgconf3:arm64 (1.8.1-4) ...
Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ...
Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up libjsoncpp26:arm64 (1.9.6-3) ...
Setting up libncurses6:arm64 (6.5+20250125-2) ...
Setting up libfribidi0:arm64 (1.0.16-1) ...
Setting up libproc2-0:arm64 (2:4.0.4-7) ...
Setting up comerr-dev:arm64 (2.1-1.47.2-1) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libssl-dev:arm64 (3.4.1-1) ...
Setting up libpng16-16t64:arm64 (1.6.46-4) ...
Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libsensors5:arm64 (1:3.6.0-10+b1) ...
Setting up libk5crypto3:arm64 (1.21.3-4) ...
Setting up libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b2) ...
Setting up libbamtools2.5.2:arm64 (2.5.2+dfsg-6+b1) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up libgfortran5:arm64 (14.2.0-16) ...
Setting up autoconf (2.72-3) ...
Setting up libbwa-dev (0.7.18-1) ...
Setting up libnghttp3-9:arm64 (1.6.0-2) ...
Setting up libwebp7:arm64 (1.5.0-0.1) ...
Setting up libnghttp3-dev:arm64 (1.6.0-2) ...
Setting up liblzma-dev:arm64 (5.6.3-1+b1) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:arm64 (3.4.7-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:arm64 (4.5.1+git230720-5) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-7) ...
Setting up libtasn1-6:arm64 (4.20.0-2) ...
Setting up libx11-6:arm64 (2:1.8.10-2) ...
Setting up libthai-data (0.1.29-2) ...
Setting up netbase (6.4) ...
Setting up libngtcp2-16:arm64 (1.9.1-1) ...
Setting up libkrb5-3:arm64 (1.21.3-4) ...
Setting up libpaper2:arm64 (2.2.5-0.3+b1) ...
Setting up libssh2-1t64:arm64 (1.11.1-1) ...
Setting up libtasn1-6-dev:arm64 (4.20.0-2) ...
Setting up openssl (3.4.1-1) ...
Setting up libdeflate-dev:arm64 (1.23-1+b1) ...
Setting up libssw0:arm64 (1.1-15+b2) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libldap2:arm64 (2.6.9+dfsg-1) ...
Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ...
Setting up libbz2-dev:arm64 (1.0.8-6) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up libice6:arm64 (2:1.1.1-1) ...
Setting up libjsoncpp-dev:arm64 (1.9.6-3) ...
Setting up liblapack3:arm64 (3.12.1-2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libfml-dev:arm64 (0.1+git20221215.85f159e-1) ...
Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ...
Setting up nettle-dev:arm64 (3.10-1+b1) ...
Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ...
Setting up libssw-dev:arm64 (1.1-15+b2) ...
Setting up libtool (2.5.4-3) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up libxext6:arm64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:arm64 (2.3.7-2+b1) ...
Setting up libpaper-utils (2.2.5-0.3+b1) ...
Setting up libngtcp2-dev:arm64 (1.9.1-1) ...
Setting up pkgconf:arm64 (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:arm64 (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:arm64 (2.83.3-2) ...
No schema files found: doing nothing.
Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ...
Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ...
Setting up libbamtools-dev:arm64 (2.5.2+dfsg-6+b1) ...
Setting up libp11-kit0:arm64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ...
Setting up libsmithwaterman-dev:arm64 (0.0+git20160702.2610e25-12+b2) ...
Setting up ucf (3.0049) ...
Setting up libssh2-1-dev:arm64 (1.11.1-1) ...
Setting up libidn2-dev:arm64 (2.3.7-2+b1) ...
Setting up libreadline8t64:arm64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
Setting up libxss1:arm64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:arm64 (2.15.0-2) ...
Setting up libsm6:arm64 (2:1.2.4-1) ...
Setting up libpython3.13-stdlib:arm64 (3.13.2-1) ...
Setting up sysstat (12.7.5-2+b1) ...
Creating config file /etc/default/sysstat with new version
update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode
Setting up libp11-kit-dev:arm64 (0.25.5-3) ...
Setting up libpython3-stdlib:arm64 (3.13.1-2) ...
Setting up libgnutls30t64:arm64 (3.8.9-2) ...
Setting up libgnutls-openssl27t64:arm64 (3.8.9-2) ...
Setting up libnghttp2-dev:arm64 (1.64.0-1) ...
Setting up fontconfig (2.15.0-2) ...
Regenerating fonts cache... done.
Setting up libxft2:arm64 (2.3.6-1+b4) ...
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Setting up python3.13 (3.13.2-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:arm64 (8.6.16-1) ...
Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Setting up bc (1.07.1-4+b1) ...
Setting up python3 (3.13.1-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:arm64 (1.18.2-2) ...
Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ...
Setting up libgnutls-dane0t64:arm64 (3.8.9-2) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libgssrpc4t64:arm64 (1.21.3-4) ...
Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up parallel (20240222+ds-2) ...
Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ...
Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ...
Setting up libgnutls28-dev:arm64 (3.8.9-2) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libcurl4t64:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
Setting up libkdb5-10t64:arm64 (1.21.3-4) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up libcurl3t64-gnutls:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
Setting up debhelper (13.24.1) ...
Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.9.1-1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up r-base-core (4.4.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-lattice (0.22-6-1+b1) ...
Setting up r-cran-nlme (3.1.167-1) ...
Setting up r-cran-farver (2.1.2-1+b1) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ...
Setting up libhts3t64:arm64 (1.21+ds-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.4-1) ...
Setting up r-cran-magrittr (2.0.3-1+b1) ...
Setting up libseqlib2:arm64 (1.2.0+dfsg-11+b3) ...
Setting up krb5-multidev:arm64 (1.21.3-4) ...
Setting up r-cran-littler (0.3.20-2) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up r-cran-rcpp (1.0.14-1) ...
Setting up r-cran-rlang (1.1.5-1) ...
Setting up r-cran-gridbase (0.4-7-5) ...
Setting up littler (0.3.20-2) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-fansi (1.0.5-1+b1) ...
Setting up r-cran-mass (7.3-64-1) ...
Setting up meson (1.7.0-1) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-cli (3.6.3-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up samtools (1.21-1) ...
Setting up libkrb5-dev:arm64 (1.21.3-4) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1+b1) ...
Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
Setting up r-cran-plyr (1.8.9-1+b1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.7-1+b1) ...
Setting up r-cran-gtable (0.3.6+dfsg-1) ...
Setting up r-cran-matrix (1.7-2-1) ...
Setting up r-cran-mgcv (1.9-1-1+b1) ...
Setting up libtabixpp0t64:arm64 (1.1.2-2.1+b1) ...
Setting up r-cran-vctrs (0.6.5-1+b1) ...
Setting up r-cran-pillar (1.10.1+dfsg-1) ...
Setting up r-cran-munsell (0.5.1-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-3) ...
Setting up libcurl4-gnutls-dev:arm64 (8.12.0+git20250209.89ed161+ds-1) ...
Setting up libvcflib2:arm64 (1.0.12+dfsg-1) ...
Setting up r-cran-scales (1.3.0-1) ...
Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
Setting up libhts-dev:arm64 (1.21+ds-1) ...
Setting up libseqlib-dev:arm64 (1.2.0+dfsg-11+b3) ...
Setting up libvcflib-tools (1.0.12+dfsg-1) ...
Setting up libtabixpp-dev:arm64 (1.1.2-2.1+b1) ...
Setting up libvcflib-dev:arm64 (1.0.12+dfsg-1) ...
Processing triggers for libc-bin (2.40-6) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/freebayes-1.3.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../freebayes_1.3.9-1_source.changes
dpkg-buildpackage: info: source package freebayes
dpkg-buildpackage: info: source version 1.3.9-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --buildsystem=meson --builddir=build
   dh_auto_clean -O--buildsystem=meson -O--builddir=build
   dh_autoreconf_clean -O--buildsystem=meson -O--builddir=build
   dh_clean -O--buildsystem=meson -O--builddir=build
 debian/rules binary
dh binary --buildsystem=meson --builddir=build
   dh_update_autotools_config -O--buildsystem=meson -O--builddir=build
   dh_autoreconf -O--buildsystem=meson -O--builddir=build
   debian/rules execute_before_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/freebayes-1.3.9'
cp -a debian/ext/* contrib/
make[1]: Leaving directory '/build/reproducible-path/freebayes-1.3.9'
   dh_auto_configure -O--buildsystem=meson -O--builddir=build
	cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1
The Meson build system
Version: 1.7.0
Source dir: /build/reproducible-path/freebayes-1.3.9
Build dir: /build/reproducible-path/freebayes-1.3.9/build
Build type: native build
Project name: freebayes
Project version: 1.3.9
C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-16) 14.2.0")
C linker for the host machine: cc ld.bfd 2.44
C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-16) 14.2.0")
C++ linker for the host machine: c++ ld.bfd 2.44
Host machine cpu family: aarch64
Host machine cpu: aarch64
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Run-time dependency liblzma found: YES 5.6.3
Run-time dependency threads found: YES
WARNING: find_library('libwfa2') starting in "lib" only works by accident and is not portable
Library libwfa2 found: YES
Run-time dependency zlib found: YES 1.3.1
Run-time dependency htslib found: YES 1.21
WARNING: find_library('libvcflib') starting in "lib" only works by accident and is not portable
Library libvcflib found: YES
Run-time dependency libseqlib found: YES 1.0
Library tabixpp found: YES
Message: Using /usr/include/vcflib dir
WARNING: find_library('libfastahack') starting in "lib" only works by accident and is not portable
Library libfastahack found: YES
WARNING: find_library('libsmithwaterman') starting in "lib" only works by accident and is not portable
Library libsmithwaterman found: YES
Message: Using /usr/include/fastahack dir
Compiler for C++ supports arguments -fpermissive: YES 
Compiler for C++ supports arguments -Wno-reorder: YES 
Compiler for C++ supports arguments -Wno-sign-compare: YES 
Compiler for C++ supports arguments -Wno-unused-variable: YES 
Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES 
Program prove found: YES (/usr/bin/prove)
Build targets in project: 3

freebayes 1.3.9

  User defined options
    buildtype         : plain
    libdir            : lib/aarch64-linux-gnu
    localstatedir     : /var
    prefix            : /usr
    python.bytecompile: -1
    sysconfdir        : /etc
    wrap_mode         : nodownload

Found ninja-1.12.1 at /usr/bin/ninja
   dh_auto_build -O--buildsystem=meson -O--builddir=build
	cd build && LC_ALL=C.UTF-8 ninja -j12 -v
[1/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Bias.cpp.o -MF libfreebayes_common.a.p/src_Bias.cpp.o.d -o libfreebayes_common.a.p/src_Bias.cpp.o -c ../src/Bias.cpp
[2/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_IndelAllele.cpp.o -MF libfreebayes_common.a.p/src_IndelAllele.cpp.o.d -o libfreebayes_common.a.p/src_IndelAllele.cpp.o -c ../src/IndelAllele.cpp
[3/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Dirichlet.cpp.o -MF libfreebayes_common.a.p/src_Dirichlet.cpp.o.d -o libfreebayes_common.a.p/src_Dirichlet.cpp.o -c ../src/Dirichlet.cpp
[4/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Contamination.cpp.o -MF libfreebayes_common.a.p/src_Contamination.cpp.o.d -o libfreebayes_common.a.p/src_Contamination.cpp.o -c ../src/Contamination.cpp
[5/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_CNV.cpp.o -MF libfreebayes_common.a.p/src_CNV.cpp.o.d -o libfreebayes_common.a.p/src_CNV.cpp.o -c ../src/CNV.cpp
[6/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Ewens.cpp.o -MF libfreebayes_common.a.p/src_Ewens.cpp.o.d -o libfreebayes_common.a.p/src_Ewens.cpp.o -c ../src/Ewens.cpp
[7/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Multinomial.cpp.o -MF libfreebayes_common.a.p/src_Multinomial.cpp.o.d -o libfreebayes_common.a.p/src_Multinomial.cpp.o -c ../src/Multinomial.cpp
[8/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_LeftAlign.cpp.o -MF libfreebayes_common.a.p/src_LeftAlign.cpp.o.d -o libfreebayes_common.a.p/src_LeftAlign.cpp.o -c ../src/LeftAlign.cpp
[9/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_BedReader.cpp.o -MF libfreebayes_common.a.p/src_BedReader.cpp.o.d -o libfreebayes_common.a.p/src_BedReader.cpp.o -c ../src/BedReader.cpp
In file included from ../src/BedReader.cpp:14:
/usr/include/SeqLib/IntervalTree.h:85:5: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor]
   85 |     ~TIntervalTree<T,K>() {
      |     ^
/usr/include/SeqLib/IntervalTree.h:85:5: note: remove the ‘< >’
/usr/include/SeqLib/IntervalTree.h:92:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   92 |     TIntervalTree<T,K>(void)
      |                       ^
/usr/include/SeqLib/IntervalTree.h:92:23: note: remove the ‘< >’
/usr/include/SeqLib/IntervalTree.h:104:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
  104 |     TIntervalTree<T,K>(const intervalTree& other)
      |                       ^
/usr/include/SeqLib/IntervalTree.h:104:23: note: remove the ‘< >’
/usr/include/SeqLib/IntervalTree.h:124:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
  124 |             intervalVector& ivals,
      |             ^~~~~~~~~~~~~~
/usr/include/SeqLib/IntervalTree.h:124:13: note: remove the ‘< >’
[10/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -MF libfreebayes_common.a.p/src_SegfaultHandler.cpp.o.d -o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o -c ../src/SegfaultHandler.cpp
[11/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Result.cpp.o -MF libfreebayes_common.a.p/src_Result.cpp.o.d -o libfreebayes_common.a.p/src_Result.cpp.o -c ../src/Result.cpp
[12/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_FBFasta.cpp.o -MF libfreebayes_common.a.p/src_FBFasta.cpp.o.d -o libfreebayes_common.a.p/src_FBFasta.cpp.o -c ../src/FBFasta.cpp
../src/FBFasta.cpp: In member function ‘std::string FB::FastaReference::getRawSequence(std::string)’:
../src/FBFasta.cpp:273:20: warning: pointer ‘pbegin’ used after ‘void free(void*)’ [-Wuse-after-free]
  273 |     s.resize((pend - pbegin)/sizeof(char));
      |               ~~~~~^~~~~~~~
../src/FBFasta.cpp:272:9: note: call to ‘void free(void*)’ here
  272 |     free(seq);
      |     ~~~~^~~~~
../src/FBFasta.cpp: In member function ‘std::string FB::FastaReference::getRawSubSequence(std::string, int, int)’:
../src/FBFasta.cpp:316:20: warning: pointer ‘pbegin’ used after ‘void free(void*)’ [-Wuse-after-free]
  316 |     s.resize((pend - pbegin)/sizeof(char));
      |               ~~~~~^~~~~~~~
../src/FBFasta.cpp:315:9: note: call to ‘void free(void*)’ here
  315 |     free(seq);
      |     ~~~~^~~~~
[13/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_NonCall.cpp.o -MF libfreebayes_common.a.p/src_NonCall.cpp.o.d -o libfreebayes_common.a.p/src_NonCall.cpp.o -c ../src/NonCall.cpp
[14/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Marginals.cpp.o -MF libfreebayes_common.a.p/src_Marginals.cpp.o.d -o libfreebayes_common.a.p/src_Marginals.cpp.o -c ../src/Marginals.cpp
[15/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Parameters.cpp.o -MF libfreebayes_common.a.p/src_Parameters.cpp.o.d -o libfreebayes_common.a.p/src_Parameters.cpp.o -c ../src/Parameters.cpp
[16/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Sample.cpp.o -MF libfreebayes_common.a.p/src_Sample.cpp.o.d -o libfreebayes_common.a.p/src_Sample.cpp.o -c ../src/Sample.cpp
[17/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_DataLikelihood.cpp.o -MF libfreebayes_common.a.p/src_DataLikelihood.cpp.o.d -o libfreebayes_common.a.p/src_DataLikelihood.cpp.o -c ../src/DataLikelihood.cpp
[18/27] c++ -Ibamleftalign.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ bamleftalign.p/src_bamleftalign.cpp.o -MF bamleftalign.p/src_bamleftalign.cpp.o.d -o bamleftalign.p/src_bamleftalign.cpp.o -c ../src/bamleftalign.cpp
[19/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Allele.cpp.o -MF libfreebayes_common.a.p/src_Allele.cpp.o.d -o libfreebayes_common.a.p/src_Allele.cpp.o -c ../src/Allele.cpp
[20/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Utility.cpp.o -MF libfreebayes_common.a.p/src_Utility.cpp.o.d -o libfreebayes_common.a.p/src_Utility.cpp.o -c ../src/Utility.cpp
In file included from ../contrib/ttmath/ttmathint.h:48,
                 from ../contrib/ttmath/ttmathbig.h:46,
                 from ../contrib/ttmath/ttmath.h:58,
                 from ../src/Utility.h:18,
                 from ../src/Utility.cpp:3:
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ValueType ttmath::Exp(const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:326:10,
    inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’:
../src/Utility.cpp:361:14: note: ‘x’ declared here
  361 |     BigFloat x, result;
      |              ^
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ValueType ttmath::Exp(const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:326:10,
    inlined from ‘BigFloat big_exp(long double)’ at ../src/Utility.cpp:363:25:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../src/Utility.cpp: In function ‘BigFloat big_exp(long double)’:
../src/Utility.cpp:361:14: note: ‘x’ declared here
  361 |     BigFloat x, result;
      |              ^
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ttmath::Big<exp, man> ttmath::Big<exp, man>::operator+(const ttmath::Big<exp, man>&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:5570:15,
    inlined from ‘long double logsumexp_probs(const std::vector<long double>&)’ at ../src/Utility.cpp:381:48:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector<long double>&)’:
../src/Utility.cpp:380:14: note: ‘maxNb’ declared here
  380 |     BigFloat maxNb; maxNb.FromDouble(maxN);
      |              ^~~~~
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ttmath::Big<exp, man> ttmath::Big<exp, man>::operator+(const ttmath::Big<exp, man>&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:5570:15,
    inlined from ‘long double logsumexp_probs(const std::vector<long double>&)’ at ../src/Utility.cpp:381:48:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector<long double>&)’:
../src/Utility.cpp:380:14: note: ‘maxNb’ declared here
  380 |     BigFloat maxNb; maxNb.FromDouble(maxN);
      |              ^~~~~
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9,
    inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’:
../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here
  288 |                 ValueType result;
      |                           ^~~~~~
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9,
    inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’:
../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here
  288 |                 ValueType result;
      |                           ^~~~~~
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9,
    inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’:
../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here
  288 |                 ValueType result;
      |                           ^~~~~~
In member function ‘ttmath::UInt<value_size>& ttmath::UInt<value_size>::operator=(const ttmath::UInt<value_size>&) [with unsigned int value_size = 2]’,
    inlined from ‘ttmath::Big<exp, man>& ttmath::Big<exp, man>::operator=(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3648:12,
    inlined from ‘ttmath::Big<exp, man>::Big(const ttmath::Big<exp, man>&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../contrib/ttmath/ttmathbig.h:3660:12,
    inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ErrorCode*) [with ValueType = Big<8, 2>]’ at ../contrib/ttmath/ttmath.h:311:9,
    inlined from ‘long double big2phred(const BigFloat&)’ at ../src/Utility.cpp:58:44:
../contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized]
 2740 |                         table[i] = p.table[i];
      |                                    ~~~~~~~^
../contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’:
../contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here
  288 |                 ValueType result;
      |                           ^~~~~~
[21/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_Genotype.cpp.o -MF libfreebayes_common.a.p/src_Genotype.cpp.o.d -o libfreebayes_common.a.p/src_Genotype.cpp.o -c ../src/Genotype.cpp
In file included from ../src/Genotype.cpp:3:
../contrib/multichoose/multipermute.h:47:19: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   47 |     ListElement<T>() { }
      |                   ^
../contrib/multichoose/multipermute.h:47:19: note: remove the ‘< >’
../contrib/multichoose/multipermute.h:49:20: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   49 |     ListElement<T>(T val, ListElement<T>* n) {
      |                    ^
../contrib/multichoose/multipermute.h:49:20: note: remove the ‘< >’
../contrib/multichoose/multipermute.h:64:5: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor]
   64 |     ~ListElement<T>() {
      |     ^
../contrib/multichoose/multipermute.h:64:5: note: remove the ‘< >’
[22/27] c++ -Ifreebayes.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ freebayes.p/src_freebayes.cpp.o -MF freebayes.p/src_freebayes.cpp.o.d -o freebayes.p/src_freebayes.cpp.o -c ../src/freebayes.cpp
[23/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_ResultData.cpp.o -MF libfreebayes_common.a.p/src_ResultData.cpp.o.d -o libfreebayes_common.a.p/src_ResultData.cpp.o -c ../src/ResultData.cpp
[24/27] c++ -Ilibfreebayes_common.a.p -I. -I.. -I../src -I../contrib/ttmath -I../contrib/multichoose -I/usr/include/vcflib -I/usr/include/fastahack -I/usr/include/SeqLib -I/usr/include/jsoncpp -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -fpermissive -Wno-reorder -Wno-sign-compare -Wno-unused-variable -Wno-unused-but-set-variable -MD -MQ libfreebayes_common.a.p/src_AlleleParser.cpp.o -MF libfreebayes_common.a.p/src_AlleleParser.cpp.o.d -o libfreebayes_common.a.p/src_AlleleParser.cpp.o -c ../src/AlleleParser.cpp
[25/27] rm -f libfreebayes_common.a && gcc-ar csrDT libfreebayes_common.a libfreebayes_common.a.p/src_Allele.cpp.o libfreebayes_common.a.p/src_AlleleParser.cpp.o libfreebayes_common.a.p/src_BedReader.cpp.o libfreebayes_common.a.p/src_Bias.cpp.o libfreebayes_common.a.p/src_CNV.cpp.o libfreebayes_common.a.p/src_Contamination.cpp.o libfreebayes_common.a.p/src_DataLikelihood.cpp.o libfreebayes_common.a.p/src_Dirichlet.cpp.o libfreebayes_common.a.p/src_Ewens.cpp.o libfreebayes_common.a.p/src_FBFasta.cpp.o libfreebayes_common.a.p/src_Genotype.cpp.o libfreebayes_common.a.p/src_IndelAllele.cpp.o libfreebayes_common.a.p/src_LeftAlign.cpp.o libfreebayes_common.a.p/src_Marginals.cpp.o libfreebayes_common.a.p/src_Multinomial.cpp.o libfreebayes_common.a.p/src_NonCall.cpp.o libfreebayes_common.a.p/src_Parameters.cpp.o libfreebayes_common.a.p/src_Result.cpp.o libfreebayes_common.a.p/src_ResultData.cpp.o libfreebayes_common.a.p/src_Sample.cpp.o libfreebayes_common.a.p/src_SegfaultHandler.cpp.o libfreebayes_common.a.p/src_Utility.cpp.o
[26/27] c++  -o bamleftalign bamleftalign.p/src_bamleftalign.cpp.o -I/usr/include/fastahack -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libvcflib.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a /usr/lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libtabixpp.so -Wl,--end-group
[27/27] c++  -o freebayes freebayes.p/src_freebayes.cpp.o -I/usr/include/fastahack -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/freebayes-1.3.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group libfreebayes_common.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so -pthread /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libtabixpp.so /usr/lib/aarch64-linux-gnu/libvcflib.so /usr/lib/aarch64-linux-gnu/libseqlib.so /usr/lib/libbwa.a /usr/lib/aarch64-linux-gnu/libfastahack.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libwfa2.so -Wl,--end-group
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/freebayes-1.3.9'
mkdir -p test/bash-tap/
ln -s -t test/bash-tap /build/reproducible-path/freebayes-1.3.9/debian/bash-tap/*
mkdir -p test/test-simple-bash
ln -s -t test/test-simple-bash /build/reproducible-path/freebayes-1.3.9/debian/test-simple-bash/*
dh_auto_test -- -v --timeout-multiplier 100
	cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=12 meson test --verbose -v --timeout-multiplier 100
ninja: Entering directory `/build/reproducible-path/freebayes-1.3.9/build'
ninja: no work to do.
1/5 T00  RUNNING       
>>> UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=107 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /usr/bin/prove -e bash -v t/00_region_and_target_handling.t

2/5 T01  RUNNING       
>>> UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=248 MESON_TEST_ITERATION=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /usr/bin/prove -e bash -v t/01_call_variants.t

3/5 T01b RUNNING       
>>> MALLOC_PERTURB_=58 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /usr/bin/prove -e bash -v t/01b_call_variants.t

4/5 T02  RUNNING       
>>> UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=147 MESON_TEST_ITERATION=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /usr/bin/prove -e bash -v t/02_multi_bam.t

5/5 T03  RUNNING       
>>> UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=239 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /usr/bin/prove -e bash -v t/03_reference_bases.t

5/5 T03  OK                0.49s
――――――――――――――――――――――――――――――――――――― ✀  ―――――――――――――――――――――――――――――――――――――
t/03_reference_bases.t .. 
1..3
ok 1 - freebayes rejects invalid reference
ok 2 - freebayes does not put uppercase IUPAC bases in VCFs
ok 3 - freebayes does not put lowercase IUPAC bases in VCFs
ok
All tests successful.
Files=1, Tests=3,  0 wallclock secs ( 0.02 usr  0.01 sys +  0.05 cusr  0.00 csys =  0.08 CPU)
Result: PASS
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――

4/5 T02  OK                0.94s
――――――――――――――――――――――――――――――――――――― ✀  ―――――――――――――――――――――――――――――――――――――
t/02_multi_bam.t .. 
1..7
ok 1 - freebayes calls from two identical BAMs
ok 2 - freebayes calls from two BAMs with different samples for different read groups
ok 3 - freebayes calls from two BAMs with different technologies for different read groups
ok 4 - freebayes rejects two BAMs with different samples for same read groups
ok 5 - freebayes rejects two BAMs with different technologies for same read groups
ok 6 - freebayes calls multiple alts from two different BAMs
ok 7 - freebayes rejects two BAMs with the same name
ok
All tests successful.
Files=1, Tests=7,  1 wallclock secs ( 0.02 usr  0.00 sys +  0.15 cusr  0.03 csys =  0.20 CPU)
Result: PASS
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――

1/5 T00  OK                1.10s
――――――――――――――――――――――――――――――――――――― ✀  ―――――――――――――――――――――――――――――――――――――
t/00_region_and_target_handling.t .. 
1..12
ok 1 - ref:4-5 ref:6-7 are empty
ok 2 - ref:4 ref:6 are empty
ok 3 - ref:5-6 ref:7-8
ok 4 - ref:5 ref:7
ok 5 - ref:5-
ok 6 - full output
ok 7 - --targets t/../00_region_and_target_handling.t.bed
ok 8 - --region ref
ok 9 - ref:1,0-
ok 10 - ref:1,0-1,1
ok 11 - ref:0-1
ok 12 - region outside of bounds error
ok
All tests successful.
Files=1, Tests=12,  1 wallclock secs ( 0.03 usr  0.00 sys +  0.13 cusr  0.04 csys =  0.20 CPU)
Result: PASS
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――

3/5 T01b OK                4.73s
――――――――――――――――――――――――――――――――――――― ✀  ―――――――――――――――――――――――――――――――――――――
t/01b_call_variants.t .. 
1..10
ok 1 - running in parallel makes no difference
ok 2 - freebayes handles spaces in file names
ok 3 - freebayes handles region and variant input even with : in contig names
ok 4 - freebayes can handle spliced reads
ok 5 - freebayes produces the expected number of lines of gVCF output
ok 6 - freebayes produces the expected number of lines of gVCF output
ok 7 - freebayes produces the expected number of lines of gVCF output
ok 8 - the CNV map may be used to specify per-sample copy numbers
ok 9 - freebayes makes the expected number of calls when capping coverage
ok 10 - freebayes correctly uses CNV map with multiple entries
ok
All tests successful.
Files=1, Tests=10,  5 wallclock secs ( 0.01 usr  0.01 sys +  3.43 cusr  0.19 csys =  3.64 CPU)
Result: PASS
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――

2/5 T01  OK                7.59s
――――――――――――――――――――――――――――――――――――― ✀  ―――――――――――――――――――――――――――――――――――――
stdout:
t/01_call_variants.t .. 
1..16
ok 1 - variant calling recovers most of the GiAB variants in a test region
ok 2 - freebayes produces the same number of calls if targeted per site or called without targets
ok 3 - a targets bed file can be used with the same effect as running by region
ok 4 - reading from stdin or not makes no difference
ok 5 - freebayes processes all alignments in BAM input
ok 6 - freebayes processes all alignments in CRAM input
ok 7 - freebayes correctly handles variant input
ok 8 - freebayes puts required variants in output
ok 9 - freebayes limits calls to input variants correctly
ok 10 - freebayes reports all input variants even when there is no input data
ok 11 - freebayes handles region and variant input
ok 12 - freebayes limits to variant input correctly when region is given
ok 13 - freebayes handles variant input and reading from stdin
ok 14 - freebayes limits to variant input when reading from stdin
ok 15 - freebayes handles region, stdin, and variant input
ok 16 - !
ok
All tests successful.
Files=1, Tests=16,  8 wallclock secs ( 0.02 usr  0.00 sys +  4.95 cusr  1.09 csys =  6.06 CPU)
Result: PASS
stderr:
[E::idx_find_and_load] Could not retrieve index file for '-'
Random access with SetRegion not available for STDIN reading (no index file)
ERROR(freebayes): Could not SetRegion to q:1..10000
t/01_call_variants.t: line 108: 1318916 Aborted                 freebayes -f tiny/q.fa.gz -@ tiny/q_spiked.vcf.gz -r q:1-10000 -l - < tiny/NA12878.chr22.tiny.bam > /dev/null 2> /dev/null
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――


Ok:                 5   
Expected Fail:      0   
Fail:               0   
Unexpected Pass:    0   
Skipped:            0   
Timeout:            0   

Full log written to /build/reproducible-path/freebayes-1.3.9/build/meson-logs/testlog.txt
find . -name core -delete
rm -Rf test/bash-tap
rm -Rf test/test-simple-bash
make[1]: Leaving directory '/build/reproducible-path/freebayes-1.3.9'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=meson -O--builddir=build
   dh_prep -O--buildsystem=meson -O--builddir=build
   dh_auto_install --destdir=debian/freebayes/ -O--buildsystem=meson -O--builddir=build
	cd build && DESTDIR=/build/reproducible-path/freebayes-1.3.9/debian/freebayes LC_ALL=C.UTF-8 ninja install
[0/1] Installing files
Installing freebayes to /build/reproducible-path/freebayes-1.3.9/debian/freebayes/usr/bin
Installing bamleftalign to /build/reproducible-path/freebayes-1.3.9/debian/freebayes/usr/bin
   dh_install -O--buildsystem=meson -O--builddir=build
   dh_installdocs -O--buildsystem=meson -O--builddir=build
   dh_installchangelogs -O--buildsystem=meson -O--builddir=build
   dh_installexamples -O--buildsystem=meson -O--builddir=build
   dh_installsystemduser -O--buildsystem=meson -O--builddir=build
   dh_perl -O--buildsystem=meson -O--builddir=build
   dh_link -O--buildsystem=meson -O--builddir=build
   dh_strip_nondeterminism -O--buildsystem=meson -O--builddir=build
   dh_compress -O--buildsystem=meson -O--builddir=build
   dh_fixperms -O--buildsystem=meson -O--builddir=build
   dh_missing -O--buildsystem=meson -O--builddir=build
   dh_dwz -a -O--buildsystem=meson -O--builddir=build
   dh_strip -a -O--buildsystem=meson -O--builddir=build
   dh_makeshlibs -a -O--buildsystem=meson -O--builddir=build
   dh_shlibdeps -a -O--buildsystem=meson -O--builddir=build
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -O--buildsystem=meson -O--builddir=build
   dh_gencontrol -O--buildsystem=meson -O--builddir=build
dpkg-gencontrol: warning: package freebayes: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package freebayes: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -O--buildsystem=meson -O--builddir=build
   dh_builddeb -O--buildsystem=meson -O--builddir=build
dpkg-deb: building package 'freebayes-dbgsym' in '../freebayes-dbgsym_1.3.9-1_arm64.deb'.
dpkg-deb: building package 'freebayes' in '../freebayes_1.3.9-1_arm64.deb'.
 dpkg-genbuildinfo --build=binary -O../freebayes_1.3.9-1_arm64.buildinfo
 dpkg-genchanges --build=binary -O../freebayes_1.3.9-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/1279144 and its subdirectories
I: Current time: Wed Mar 25 17:07:11 -12 2026
I: pbuilder-time-stamp: 1774501631
Thu Feb 20 22:44:13 UTC 2025  I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net.
Thu Feb 20 22:44:13 UTC 2025  I: Preparing to do remote build '2' on codethink04-arm64.debian.net.
Thu Feb 20 22:46:36 UTC 2025  I: Deleting $TMPDIR on codethink04-arm64.debian.net.
Thu Feb 20 22:46:37 UTC 2025  I: freebayes_1.3.9-1_arm64.changes:
Format: 1.8
Date: Sun, 16 Feb 2025 16:26:52 +0100
Source: freebayes
Binary: freebayes freebayes-dbgsym
Architecture: arm64
Version: 1.3.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 freebayes  - Bayesian haplotype-based polymorphism discovery and genotyping
Closes: 1067271
Changes:
 freebayes (1.3.9-1) unstable; urgency=medium
 .
   [ Michael R. Crusoe ]
   * d/watch: mangle pre-release tags appropriately
   * d/control: pkg-config → pkgconf
   * d/ext/multichoose: bundle in library missing from tarball.
   * d/ext/multichoose: update to
     https://github.com/vcflib/multichoose/commit/255192edd49cfe36557f7f4
     f0d2d6ee1c702ffbb
   * d/clean: added more entries
 .
   [ Andreas Tille ]
   * New upstream version
   * Bumped version in Build-Depends: libvcflib-dev (>= 1.0.12~)
     Closes: #1067271
   * Standards-Version: 4.7.0 (routine-update)
   * d/watch: Fix download file name
Checksums-Sha1:
 d399b666f0b4a122d6c08111b47e7152f065436d 6823636 freebayes-dbgsym_1.3.9-1_arm64.deb
 0b5fdb52562a7a2393ee8b8cd38419568e9b8fce 11669 freebayes_1.3.9-1_arm64.buildinfo
 fbcc313cb557ec6534c360a3d6f1c7531149dcaf 1460808 freebayes_1.3.9-1_arm64.deb
Checksums-Sha256:
 8ebad522585930d7e37d0327ce33bc44ad57be267733dba8c600cc5267159409 6823636 freebayes-dbgsym_1.3.9-1_arm64.deb
 11ea6eb4b61c54d0157e5c4606d3a0fcc83b4b2bb7faad882ae5cd682c9948fb 11669 freebayes_1.3.9-1_arm64.buildinfo
 679edd653720d8d611bf37b022ee190871d2b8509149c879274e2116df3f01de 1460808 freebayes_1.3.9-1_arm64.deb
Files:
 293fd97399961395eb784639f57825af 6823636 debug optional freebayes-dbgsym_1.3.9-1_arm64.deb
 76fa5e1f30cfff17e86cae13684a72b1 11669 science optional freebayes_1.3.9-1_arm64.buildinfo
 111ab041762c7038cb29704fefc577ef 1460808 science optional freebayes_1.3.9-1_arm64.deb
Thu Feb 20 22:46:38 UTC 2025  I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_3-78414.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/freebayes_1.3.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/freebayes_1.3.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/freebayes_1.3.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/b1/freebayes_1.3.9-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fM5JKmnC/b2/freebayes_1.3.9-1_arm64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.003s)
       0.003s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 213ms
CPU time consumed: 213ms
Thu Feb 20 22:46:38 UTC 2025  I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Thu Feb 20 22:46:38 UTC 2025  I: freebayes from trixie built successfully and reproducibly on arm64.
Thu Feb 20 22:46:40 UTC 2025  I: Submitting .buildinfo files to external archives:
Thu Feb 20 22:46:40 UTC 2025  I: Submitting 16K	b1/freebayes_1.3.9-1_arm64.buildinfo.asc
Thu Feb 20 22:46:41 UTC 2025  I: Submitting 16K	b2/freebayes_1.3.9-1_arm64.buildinfo.asc
Thu Feb 20 22:46:42 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Feb 20 22:46:42 UTC 2025  I: Done submitting .buildinfo files.
Thu Feb 20 22:46:42 UTC 2025  I: Removing signed freebayes_1.3.9-1_arm64.buildinfo.asc files:
removed './b1/freebayes_1.3.9-1_arm64.buildinfo.asc'
removed './b2/freebayes_1.3.9-1_arm64.buildinfo.asc'