Thu Sep 26 01:11:09 UTC 2024 I: starting to build emmax/trixie/arm64 on jenkins on '2024-09-26 01:10' Thu Sep 26 01:11:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/38460/console.log Thu Sep 26 01:11:09 UTC 2024 I: Downloading source for trixie/emmax=0~beta.20100307-5 --2024-09-26 01:11:09-- http://deb.debian.org/debian/pool/main/e/emmax/emmax_0%7ebeta.20100307-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2140 (2.1K) [text/prs.lines.tag] Saving to: ‘emmax_0~beta.20100307-5.dsc’ 0K .. 100% 213M=0s 2024-09-26 01:11:09 (213 MB/s) - ‘emmax_0~beta.20100307-5.dsc’ saved [2140/2140] Thu Sep 26 01:11:09 UTC 2024 I: emmax_0~beta.20100307-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: emmax Binary: emmax Architecture: any Version: 0~beta.20100307-5 Maintainer: Debian Med Packaging Team Uploaders: SteffenSteffen Moeller , Andreas Tille Homepage: http://genome.sph.umich.edu/wiki/EMMAX Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/emmax Vcs-Git: https://salsa.debian.org/med-team/emmax.git Testsuite: autopkgtest Testsuite-Triggers: plink Build-Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev Package-List: emmax deb science optional arch=any Checksums-Sha1: 47537b608e41f1e938c56cdfdff7c80c9d618d5a 18575 emmax_0~beta.20100307.orig.tar.gz a68d2e731d74a3e72bfb510e25e464486dfaf5eb 8936 emmax_0~beta.20100307-5.debian.tar.xz Checksums-Sha256: 79670917a0ac74ff1899fb27361e2e07b0f3a7911a9d9c6e0c18cf066b8987ea 18575 emmax_0~beta.20100307.orig.tar.gz 11f002762a44487da001e6036c995d0f0451c39242ad4e8fdbd5fd9f646e1315 8936 emmax_0~beta.20100307-5.debian.tar.xz Files: 8da46b2c678fd087b8500e48816a3461 18575 emmax_0~beta.20100307.orig.tar.gz 183bf6ef5bc78238a3ef37557e39ff16 8936 emmax_0~beta.20100307-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWF3gURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEpvRAAms5mz7wxWLBiBdywR+c/PoPg+IoFAbTj FCxw8F35pk3KDOFd1tH+uWaoot9j2lTxSdtvutwfYIAOljAocBpLmg+GTbNMTM6o 5z6C+HI408Nl98qBjPVkKLLIuDPAeumcdApmGsQL5i3GQkMjPNAk2W0CApdOLvV7 5M8sQ9d1WuvVAKbyAhMvs/V1M9KNmnS9oMQBL5CERJCE/WwlpLbQzyYmXL7pnDA8 if0RCOAd2wby0prdmq5V2U9ZwGeSi+OGcFfMH6pKlvddlcEuyWJphUzLq3rArVVw uHR/UAc5VVJbb8Hu5RUqRMn3hqyDMfYxS6Eido8aiFwH4ZkHYuCyMEyP3TEiELtV Xkp04vp2cIoIqa7eJ+2jWXttiSyYQgyTlH1CcPOdaXK1zrTwgX8QT+BJGCwUONhw i8mVgWer8K+2DYIbuD3bDxUXo05cb2FRrCNRhE2QkkNdBRBbQQe8kSPgr/+3Swd/ tcLsD0BlXfMy576XYtNwbD5RO2QhNBA+jIuBHVMoAWct7hIH4mC0GAiho/UaYPM3 eWzG9lI5W8WfIW86RCJwQng5IFDA62pU07IZzMMpbK/bEl7elzsbCWWwpSF1w+Ij qK6qcpRmm5aPOBvxopHYR+xIut2dOcp7dSXsAV8NlWJnYJTI1fpGIHGUJZAslWza rALCD/MyaP4= =hZJz -----END PGP SIGNATURE----- Thu Sep 26 01:11:09 UTC 2024 I: Checking whether the package is not for us Thu Sep 26 01:11:09 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Sep 26 01:11:09 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Sep 26 01:11:37 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 28 19:34:10 -12 2025 I: pbuilder-time-stamp: 1761723250 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [emmax_0~beta.20100307-5.dsc] I: copying [./emmax_0~beta.20100307.orig.tar.gz] I: copying [./emmax_0~beta.20100307-5.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 22 19:05:41 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./emmax_0~beta.20100307-5.dsc: no acceptable signature found dpkg-source: info: extracting emmax in emmax-0~beta.20100307 dpkg-source: info: unpacking emmax_0~beta.20100307.orig.tar.gz dpkg-source: info: unpacking emmax_0~beta.20100307-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dynamic.patch dpkg-source: info: applying aborts.patch dpkg-source: info: applying install.patch dpkg-source: info: applying clean.patch dpkg-source: info: applying logfile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix-autopkgtest.patch dpkg-source: info: applying lapacke.patch dpkg-source: info: applying syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1170374/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='fe58ffb3caf14dc6ad1439f9438f60e9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1170374' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/pbuilderrc_evBn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/b1 --logfile b1/build.log emmax_0~beta.20100307-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1170374/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libopenblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libopenblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapacke-dev; however: Package liblapacke-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} liblapacke{a} liblapacke-dev{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtmglib-dev{a} libtmglib3{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 27.1 MB of archives. After unpacking 123 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3 [98.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-3 [362 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3 [3584 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libtmglib3 arm64 3.12.0-3 [95.9 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 liblapacke arm64 3.12.0-3 [336 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libtmglib-dev arm64 3.12.0-3 [101 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 liblapacke-dev arm64 3.12.0-3 [322 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 27.1 MB in 0s (184 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../29-libblas3_3.12.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-3) ... Selecting previously unselected package libblas-dev:arm64. Preparing to unpack .../30-libblas-dev_3.12.0-3_arm64.deb ... Unpacking libblas-dev:arm64 (3.12.0-3) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../31-libgfortran5_14.2.0-3_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-3) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../32-liblapack3_3.12.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-3) ... Selecting previously unselected package liblapack-dev:arm64. Preparing to unpack .../33-liblapack-dev_3.12.0-3_arm64.deb ... Unpacking liblapack-dev:arm64 (3.12.0-3) ... Selecting previously unselected package libtmglib3:arm64. Preparing to unpack .../34-libtmglib3_3.12.0-3_arm64.deb ... Unpacking libtmglib3:arm64 (3.12.0-3) ... Selecting previously unselected package liblapacke:arm64. Preparing to unpack .../35-liblapacke_3.12.0-3_arm64.deb ... Unpacking liblapacke:arm64 (3.12.0-3) ... Selecting previously unselected package libtmglib-dev:arm64. Preparing to unpack .../36-libtmglib-dev_3.12.0-3_arm64.deb ... Unpacking libtmglib-dev:arm64 (3.12.0-3) ... Selecting previously unselected package liblapacke-dev:arm64. Preparing to unpack .../37-liblapacke-dev_3.12.0-3_arm64.deb ... Unpacking liblapacke-dev:arm64 (3.12.0-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../38-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libgfortran5:arm64 (14.2.0-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libblas-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtmglib3:arm64 (3.12.0-3) ... Setting up liblapack-dev:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up liblapacke:arm64 (3.12.0-3) ... Setting up libtmglib-dev:arm64 (3.12.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up liblapacke-dev:arm64 (3.12.0-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/emmax-0~beta.20100307/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../emmax_0~beta.20100307-5_source.changes dpkg-buildpackage: info: source package emmax dpkg-buildpackage: info: source version 0~beta.20100307-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' rm -f *.o emmax emmax-kin make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' gcc -O2 -Wall -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/emmax-0~beta.20100307=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -o emmax emmax.c -llapacke -llapack -lblas -lm -lz -Wl,-z,relro gcc -O2 -Wall -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/emmax-0~beta.20100307=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -o emmax-kin emmax-kin.c -llapacke -llapack -lblas -lm -lz -Wl,-z,relro make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/emmax/ make -j12 install DESTDIR=/build/reproducible-path/emmax-0\~beta.20100307/debian/emmax AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' mkdir -p /build/reproducible-path/emmax-0~beta.20100307/debian/emmax/usr/bin/ cp emmax emmax-kin /build/reproducible-path/emmax-0~beta.20100307/debian/emmax/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/emmax-0~beta.20100307' dh_install --sourcedir=. make[1]: Leaving directory '/build/reproducible-path/emmax-0~beta.20100307' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'emmax' in '../emmax_0~beta.20100307-5_arm64.deb'. dpkg-deb: building package 'emmax-dbgsym' in '../emmax-dbgsym_0~beta.20100307-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../emmax_0~beta.20100307-5_arm64.buildinfo dpkg-genchanges --build=binary -O../emmax_0~beta.20100307-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1170374 and its subdirectories I: Current time: Tue Oct 28 19:34:35 -12 2025 I: pbuilder-time-stamp: 1761723275 Thu Sep 26 01:11:38 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Sep 26 01:11:38 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Sep 26 01:12:11 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Sep 26 01:12:12 UTC 2024 I: emmax_0~beta.20100307-5_arm64.changes: Format: 1.8 Date: Fri, 22 Dec 2023 20:04:08 +0100 Source: emmax Binary: emmax emmax-dbgsym Architecture: arm64 Version: 0~beta.20100307-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: emmax - genetic mapping considering population structure Changes: emmax (0~beta.20100307-5) unstable; urgency=medium . * Put libblas-dev as first alternative to be more portable Checksums-Sha1: 765c6c1100cf292e79dceff2f139f3564fe332ac 53248 emmax-dbgsym_0~beta.20100307-5_arm64.deb f3f681b0cb058bf8155f6c9fa9a8baa9a45ca77b 5184 emmax_0~beta.20100307-5_arm64.buildinfo e0d22bc7e64025139ddc20d7c1ec399610cf87f7 25932 emmax_0~beta.20100307-5_arm64.deb Checksums-Sha256: 4f73c0020018e3b2a9a3b52b37b4cbda2993cae5fc2a851d3e41012cc533d7a8 53248 emmax-dbgsym_0~beta.20100307-5_arm64.deb 1e6764e109eff389160157f4a8123da7eade7fe3d7201a8c0475b60562a2e59f 5184 emmax_0~beta.20100307-5_arm64.buildinfo bfc15b46181e266576af9592587130e606ebf8ad9563aca5c534d677b4e01358 25932 emmax_0~beta.20100307-5_arm64.deb Files: b08b920b64fa7acf76804045f843377e 53248 debug optional emmax-dbgsym_0~beta.20100307-5_arm64.deb 99521cfb62147a773ac2096894c58edb 5184 science optional emmax_0~beta.20100307-5_arm64.buildinfo dd60845b07b35f07cd1abde1b307eac6 25932 science optional emmax_0~beta.20100307-5_arm64.deb Thu Sep 26 01:12:14 UTC 2024 I: diffoscope 277 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-38460.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/emmax_0~beta.20100307-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/emmax_0~beta.20100307-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/emmax_0~beta.20100307-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/b1/emmax_0~beta.20100307-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7elJMAld/b2/emmax_0~beta.20100307-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.517s) 0.517s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 951ms CPU time consumed: 950ms Thu Sep 26 01:12:15 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 26 01:12:15 UTC 2024 I: emmax from trixie built successfully and reproducibly on arm64. Thu Sep 26 01:12:16 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Sep 26 01:12:16 UTC 2024 I: Submitting 8.0K b1/emmax_0~beta.20100307-5_arm64.buildinfo.asc Thu Sep 26 01:12:17 UTC 2024 I: Submitting 8.0K b2/emmax_0~beta.20100307-5_arm64.buildinfo.asc Thu Sep 26 01:12:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Sep 26 01:12:18 UTC 2024 I: Done submitting .buildinfo files. Thu Sep 26 01:12:18 UTC 2024 I: Removing signed emmax_0~beta.20100307-5_arm64.buildinfo.asc files: removed './b1/emmax_0~beta.20100307-5_arm64.buildinfo.asc' removed './b2/emmax_0~beta.20100307-5_arm64.buildinfo.asc'