Wed Nov 6 14:13:14 UTC 2024 I: starting to build dipy/trixie/arm64 on jenkins on '2024-11-06 14:12' Wed Nov 6 14:13:14 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/67087/console.log Wed Nov 6 14:13:14 UTC 2024 I: Downloading source for trixie/dipy=1.9.0-8 --2024-11-06 14:13:14-- http://deb.debian.org/debian/pool/main/d/dipy/dipy_1.9.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3023 (3.0K) [text/prs.lines.tag] Saving to: ‘dipy_1.9.0-8.dsc’ 0K .. 100% 277M=0s 2024-11-06 14:13:14 (277 MB/s) - ‘dipy_1.9.0-8.dsc’ saved [3023/3023] Wed Nov 6 14:13:14 UTC 2024 I: dipy_1.9.0-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dipy Binary: python3-dipy, python3-dipy-lib, python-dipy-doc Architecture: any all Version: 1.9.0-8 Maintainer: Debian Med Packaging Team Uploaders: Yaroslav Halchenko , Michael Hanke , Étienne Mollier Homepage: https://dipy.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dipy Vcs-Git: https://salsa.debian.org/med-team/dipy.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-matplotlib, python3-nibabel, python3-pandas, python3-pytest, python3-sklearn, python3-tables, python3-vtk9, xauth, xvfb Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev:native, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py , python3-matplotlib , python3-nibabel , python3-pil.imagetk , python3-pytest , python3-pandas [!mips64el] , python3-tables [!s390x] , python3-tk , python3-trx-python , python3-sklearn , python3-tqdm , xvfb , xauth Build-Depends-Indep: python3-sphinx , python3-numpydoc , python3-skimage , python3-sphinx-design , python3-doc Package-List: python-dipy-doc deb doc optional arch=all python3-dipy deb python optional arch=all python3-dipy-lib deb python optional arch=any Checksums-Sha1: 10a246b509c519655a8af8df949fa05d60af458d 6516685 dipy_1.9.0.orig.tar.gz 3b087757c2b746a43a26f9423a2f9456df05c1c6 24260 dipy_1.9.0-8.debian.tar.xz Checksums-Sha256: 2760c3d1456dd3620c88836b2aa7d576e73bea10a28ccd795f1582bfaefb4ff1 6516685 dipy_1.9.0.orig.tar.gz 3b9c0b4e6cbfceb2825c56723da83f9f091123a44a21805fee51a2090d9673d4 24260 dipy_1.9.0-8.debian.tar.xz Files: 7df1186f94264d6e658c4b0116754c50 6516685 dipy_1.9.0.orig.tar.gz 056f6702b7a1bc9cd1a37c9fb0cfaf3e 24260 dipy_1.9.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbyu8wACgkQPCZ2P2xn 5uLqQQ//afcb0L2KbL07Gja2dNhQzxvG+ql8prpirg8yghegAk3oCmg1O0h2Pioa K7/ShzcsoExHZVB8IcScR+Qm6IWqRy+O2RUjQn7mncNfUTrKtqS5VoKdlnGVCJva y4Yw5jcaFfM2rnHIQKUcF073CtnTLwWkcOmED815hLN80c9QEaK6t7FtBdwaWihZ wvpTcP8J4Dg15PYSE+W/95rSbQbMcNnmxqRw/HMhlXx28IF3b4rz0Rrl7GS8Sqt+ hsYUjY5+2jmMjXakvvZ/YU4Cso57lx+ljEj3g75SMBPkT/sIaPfuZaGMaVaAm9qD nPO4GZEblM5BH5SP6PL6Grntp7Eojl3JkgtobUKT1+XMqV3wUxR7yQ2dnJjVcCLk EitNC2fjDYmCm++aUJ/YD1fDZbQT4YdQxEkaG2QrqUgzW3Ijh2j0VZzLjdg7JUgT UstMBMaMLE/ABykDcBzT/hdIgurzblAE5zxxtfljLJ+J+HU7XDLESucO6RW5/9ye 135Poi4FvFit/JuPmJrWZ/p81c+tQMDAXTcxWg3cpp8Bwnma4QHI7htNRVrtrZAh l14631B1BURxxKIJru15zMvZQL5znjxzbk2yIRVGDIwJM+H8xZJX6FwRFZFSQjjj 6uaIxgvvbT2vGJxlKkMwwXTypx8RIhG1zLJnEx9la/Q03xcpQJw= =fJyE -----END PGP SIGNATURE----- Wed Nov 6 14:13:14 UTC 2024 I: Checking whether the package is not for us Wed Nov 6 14:13:14 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Nov 6 14:13:14 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Nov 6 14:57:36 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 6 02:13:17 -12 2024 I: pbuilder-time-stamp: 1730902397 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dipy_1.9.0-8.dsc] I: copying [./dipy_1.9.0.orig.tar.gz] I: copying [./dipy_1.9.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 24 13:17:00 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dipy_1.9.0-8.dsc: no acceptable signature found dpkg-source: info: extracting dipy in dipy-1.9.0 dpkg-source: info: unpacking dipy_1.9.0.orig.tar.gz dpkg-source: info: unpacking dipy_1.9.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_no_sources_for_docs dpkg-source: info: applying skip-tests-needing-internet.patch dpkg-source: info: applying fix-i386.patch dpkg-source: info: applying skip_wall-clock_test.patch dpkg-source: info: applying no-network.patch dpkg-source: info: applying relay_comparison.patch dpkg-source: info: applying sphinx-default.patch dpkg-source: info: applying fix-privacy-breaches.patch dpkg-source: info: applying pytest-8.patch dpkg-source: info: applying 0011-Python-3.13-Fix-tests-for-next-Python-release-3210.patch dpkg-source: info: applying 0012-bf-fix-big-endian-compatibility.patch dpkg-source: info: applying improve-fibonacci_sphere-reliability dpkg-source: info: applying syntax_warnings.patch dpkg-source: info: applying python3 dpkg-source: info: applying tests_ignore_duration I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2464446/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='229a25f10bb04331998f938e5a0a32bc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2464446' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/pbuilderrc_qRKH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/b1 --logfile b1/build.log dipy_1.9.0-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2464446/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, pkgconf, libgomp1, cython3, python3-all-dev:native, libpython3-all-dev, python3-setuptools, python3-mesonpy, python3-numpy, python3-scipy, python3-h5py, python3-matplotlib, python3-nibabel, python3-pil.imagetk, python3-pytest, python3-pandas, python3-tables, python3-tk, python3-trx-python, python3-sklearn, python3-tqdm, xvfb, xauth, python3-sphinx, python3-numpydoc, python3-skimage, python3-sphinx-design, python3-doc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-mesonpy; however: Package python3-mesonpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nibabel; however: Package python3-nibabel is not installed. pbuilder-satisfydepends-dummy depends on python3-pil.imagetk; however: Package python3-pil.imagetk is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-tables; however: Package python3-tables is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-trx-python; however: Package python3-trx-python is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on xauth; however: Package xauth is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-skimage; however: Package python3-skimage is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-design; however: Package python3-sphinx-design is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libblosc1{a} libblosc2-4{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm19{a} liblzf1{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1t64{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunwind8{a} libvulkan1{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} meson{a} netbase{a} ninja-build{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-tables-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-deepdiff{a} python3-defusedxml{a} python3-dev{a} python3-doc{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imageio{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-joblib{a} python3-jsonpickle{a} python3-kiwisolver{a} python3-lazy-loader{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-mesonpy{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-nibabel{a} python3-numexpr{a} python3-numpy{a} python3-numpydoc{a} python3-ordered-set{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-skimage{a} python3-skimage-lib{a} python3-sklearn{a} python3-sklearn-lib{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-design{a} python3-sympy{a} python3-tables{a} python3-tables-lib{a} python3-tabulate{a} python3-threadpoolctl{a} python3-tifffile{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-trx-python{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-doc{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} x11-xkb-utils{a} xauth{a} xkb-data{a} xml-core{a} xserver-common{a} xvfb{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers patchelf psmisc publicsuffix python3-bottleneck python3-bs4 python3-clevercsv python3-cssselect python3-dask python3-dipy python3-fuse python3-gdal python3-html5lib python3-odf python3-olefile python3-openpyxl python3-psutil python3-pydicom python3-pydot python3-pygraphviz python3-simplejson python3-yaml shared-mime-info wget xdg-user-dirs xfonts-base 0 packages upgraded, 291 newly installed, 0 to remove and 0 not upgraded. Need to get 229 MB of archives. After unpacking 995 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b2 [24.4 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 64 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1 [2192 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 71 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libsnappy1v5 arm64 1.2.1-1+b1 [28.7 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libblosc1 arm64 1.21.5+ds-1+b2 [39.2 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libblosc2-4 arm64 2.15.1+ds-1 [165 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdrm-common all 2.4.123-1 [8084 B] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.3-2 [142 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b1 [22.5 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libwayland-server0 arm64 1.23.0-1+b1 [33.4 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libglapi-mesa arm64 24.2.4-1 [48.2 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libz3-4 arm64 4.8.12-3.1+b3 [6832 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libllvm19 arm64 1:19.1.2-2 [23.3 MB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libx11-xcb1 arm64 2:1.8.7-1+b1 [232 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libxcb-dri2-0 arm64 1.17.0-2+b1 [107 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libxshmfence1 arm64 1.3-1+b2 [9076 B] Get: 129 http://deb.debian.org/debian trixie/main arm64 mesa-libgallium arm64 24.2.4-1 [7681 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libgbm1 arm64 24.2.4-1 [42.0 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-6 [361 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libxfixes3 arm64 1:6.0.0-2+b2 [20.5 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b3 [19.2 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libvulkan1 arm64 1.3.296.0-1 [123 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libgl1-mesa-dri arm64 24.2.4-1 [43.5 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libglx-mesa0 arm64 24.2.4-1 [152 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-4+b2 [154 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b2 [10.0 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.6-1 [1981 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.6-1 [4782 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 170 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 171 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libunwind8 arm64 1.6.2-3.1 [47.7 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.4.0-0.1+b1 [110 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.4.0-0.1+b1 [122 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b2 [53.2 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libxfont2 arm64 1:2.0.6-1+b2 [124 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libxkbfile1 arm64 1:1.1.0-1+b2 [72.5 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 libxrandr2 arm64 2:1.5.4-1+b1 [36.0 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 meson all 1.6.0-1 [628 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 193 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.1-1 [45.8 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 python-tables-data all 3.10.1-1 [49.5 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 205 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.6-1 [506 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 208 http://deb.debian.org/debian trixie/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 python3-babel all 2.14.0-1 [111 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b5 [307 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 214 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.0-1 [112 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 python3-cpuinfo all 9.0.0+git20221119-2 [23.4 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 220 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 python3-jsonpickle all 3.3.0+dfsg-1 [44.1 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 python3-ordered-set all 4.1.0-1 [9628 B] Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-deepdiff all 6.7.1-2 [65.6 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 python3.12-doc all 3.12.6-1 [13.1 MB] Get: 227 http://deb.debian.org/debian trixie/main arm64 python3-doc all 3.12.6-1 [9884 B] Get: 228 http://deb.debian.org/debian trixie/main arm64 python3-roman all 4.2-1 [10.4 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b5 [25.3 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB] Get: 235 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.11.0-5 [887 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 243 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.6-1 [110 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.12.6-1 [9428 B] Get: 246 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1 [480 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 python3-imageio all 2.36.0-1 [229 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 250 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 251 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b2 [13.8 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 python3-joblib all 1.3.2-4 [216 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 python3-lazy-loader all 0.4-1 [13.5 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3 [5509 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 python3-pyproject-metadata all 0.9.0~rc1-1 [20.9 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 python3-mesonpy all 0.17.1-1 [108 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 261 http://deb.debian.org/debian trixie/main arm64 python3-nibabel all 5.2.1-2 [2659 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 python3-numexpr arm64 2.10.1-2+b2 [121 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 sphinx-common all 7.4.7-4 [731 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 python3-sphinx all 7.4.7-4 [588 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 python3-numpydoc all 1.6.0-2 [49.6 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [3746 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 python3-skimage-lib arm64 0.24.0-5 [2139 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 python3-tifffile all 20240920-1 [186 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 python3-skimage all 0.24.0-5 [20.6 MB] Get: 279 http://deb.debian.org/debian trixie/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3213 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 python3-sphinx-design all 0.6.1-1 [883 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 python3-tables-lib arm64 3.10.1-1 [435 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 python3-tables all 3.10.1-1 [355 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 python3-tqdm all 4.66.5-1 [90.1 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 python3-trx-python all 0.3-1 [40.2 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 x11-xkb-utils arm64 7.7+9 [149 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 xkb-data all 2.42-1 [790 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 xserver-common all 2:21.1.14-1 [2397 kB] Get: 291 http://deb.debian.org/debian trixie/main arm64 xvfb arm64 2:21.1.14-1 [3110 kB] Fetched 229 MB in 2s (134 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-2_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-2) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20409 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21483 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. 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Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up ninja-build (1.12.1-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libsnappy1v5:arm64 (1.2.1-1+b1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Nov 6 14:14:43 UTC 2024. Universal Time is now: Wed Nov 6 14:14:43 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libblosc2-4:arm64 (2.15.1+ds-1) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.8.12-3.1+b3) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. 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Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libglapi-mesa:arm64 (24.2.4-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-6) ... Setting up libvulkan1:arm64 (1.3.296.0-1) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up libxcb-dri2-0:arm64 (1.17.0-2+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:arm64 (1.3-1+b2) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:arm64 (1.17.0-2+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up libblosc1:arm64 (1.21.5+ds-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libxkbfile1:arm64 (1:1.1.0-1+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:arm64 (1.4.0-0.1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up python-tables-data (3.10.1-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b3) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ... Setting up libllvm19:arm64 (1:19.1.2-2) ... Setting up libx11-xcb1:arm64 (2:1.8.7-1+b1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxpm4:arm64 (1:3.5.17-1+b2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libxrandr2:arm64 (2:1.5.4-1+b1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:arm64 (2.4.123-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up python3.12-doc (3.12.6-1) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libxfont2:arm64 (1:2.0.6-1+b2) ... Setting up python3-doc (3.12.6-1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.10.1-2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up libdrm-radeon1:arm64 (2.4.123-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.6-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-1) ... Setting up libraqm0:arm64 (0.10.1-1+b2) ... Setting up sphinx-common (7.4.7-4) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4) ... Setting up mesa-libgallium:arm64 (24.2.4-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up libxmu6:arm64 (2:1.1.3-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.6-1) ... Setting up libgbm1:arm64 (24.2.4-1) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3.12 (3.12.6-1) ... Setting up libgl1-mesa-dri:arm64 (24.2.4-1) ... 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Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-jsonpickle (3.3.0+dfsg-1) ... Setting up libpython3-dev:arm64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pyproject-metadata (0.9.0~rc1-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b5) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up xvfb (2:21.1.14-1) ... Setting up python3-tqdm (4.66.5-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-tk:arm64 (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1) ... Setting up libpython3-all-dev:arm64 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-joblib (1.3.2-4) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up meson (1.6.0-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-mesonpy (0.17.1-1) ... Setting up python3-contourpy (1.3.0-2) ... Setting up python3-imageio (2.36.0-1) ... Setting up dh-python (6.20241024) ... Setting up python3-deepdiff (6.7.1-2) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-skimage-lib:arm64 (0.24.0-5) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-tables-lib (3.10.1-1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-tifffile (20240920-1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-nibabel (5.2.1-2) ... Setting up python3-h5py (3.11.0-5) ... Setting up python3-sklearn (1.4.2+dfsg-6) ... Setting up python3-numexpr (2.10.1-2+b2) ... Setting up python3-trx-python (0.3-1) ... Setting up python3-tables (3.10.1-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-matplotlib (3.8.3-3) ... Setting up python3-skimage (0.24.0-5) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Setting up python3-sphinx-design (0.6.1-1) ... Setting up python3-numpydoc (1.6.0-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dipy-1.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dipy_1.9.0-8_source.changes dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 1.9.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_auto_clean || true rm -rf .pybuild __pycache__ find dipy -name "*\.c" -delete make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules execute_before_dh_clean make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/build/reproducible-path/dipy-1.9.0/doc' rm -rf reference/*.rst rm -rf reference_cmd/*.rst rm -rf examples_revamped cd examples_built && find . -not -name "README" -not -name ".gitignore" -exec rm -rfd {} \; || true rm: refusing to remove '.' or '..' directory: skipping '.' rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory make[2]: [Makefile:32: clean] Error 1 (ignored) make[2]: Leaving directory '/build/reproducible-path/dipy-1.9.0/doc' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' chmod 0644 doc/examples/*.py dh_auto_build I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy --config-setting compile-args=--verbose --config-setting setup-args=--wrap-mode=nodownload --config-setting setup-args=--prefix=/usr --config-setting setup-args=--sysconfdir=/etc --config-setting setup-args=--localstatedir=/var --config-setting setup-args=--libdir=lib/aarch64-linux-gnu * Building wheel... + meson setup /build/reproducible-path/dipy-1.9.0 /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --wrap-mode=nodownload --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --native-file=/build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/meson-python-native-file.ini The Meson build system Version: 1.6.0 Source dir: /build/reproducible-path/dipy-1.9.0 Build dir: /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco Build type: native build Project name: dipy Project version: 1.9.0 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-6) 14.2.0") C linker for the host machine: cc ld.bfd 2.43.1 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-6) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.43.1 Cython compiler for the host machine: cython (cython 3.0.11) Host machine cpu family: aarch64 Host machine cpu: aarch64 Program python found: YES (/usr/bin/python3.12) Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency python found: YES 3.12 Program cython found: YES (/usr/bin/cython) Library m found: YES Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-cpp: YES Compiler for C++ supports arguments -Wno-deprecated-declarations: YES Compiler for C++ supports arguments -Wno-class-memaccess: YES Compiler for C++ supports arguments -Wno-format-truncation: YES Compiler for C++ supports arguments -Wno-format-extra-args: YES Compiler for C++ supports arguments -Wno-format: NO Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-switch: YES Compiler for C++ supports arguments -Wno-terminate: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-function: YES Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-int-in-bool-context: YES Run-time dependency OpenMP found: YES 4.5 Checking if "SSE intrinsics" compiles: NO Checking if "ARM NEON intrinsics" compiles: YES Build targets in project: 45 dipy 1.9.0 User defined options Native files : /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/meson-python-native-file.ini b_ndebug : if-release b_vscrt : md buildtype : release libdir : lib/aarch64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja Generating targets: 0%| | 0/45 eta ? Generating targets: 93%|█████████▎| 42/45 eta 00:00 Writing build.ninja: 0%| | 0/188 eta ? + /usr/bin/ninja --verbose [1/123] /usr/bin/python3.12 ../dipy/../tools/version_utils.py --source-root .. [2/123] /usr/bin/meson --internal copy ../dipy/__init__.py dipy/__init__.py [3/123] /usr/bin/meson --internal copy ../dipy/../src/conditional_omp.h dipy/conditional_omp.h [4/123] /usr/bin/meson --internal copy ../dipy/../src/dpy_math.h dipy/dpy_math.h [5/123] /usr/bin/meson --internal copy ../dipy/../src/cythonutils.h dipy/cythonutils.h [6/123] /usr/bin/meson --internal copy ../dipy/../src/safe_openmp.pxd dipy/safe_openmp.pxd [7/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/denspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/denoise/denspeed.pyx [8/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/bundlemin.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/bundlemin.pyx [9/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/nlmeans_block.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/denoise/nlmeans_block.pyx [10/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/pca_noise_estimate.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/denoise/pca_noise_estimate.pyx [11/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/enhancement_kernel.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/denoise/enhancement_kernel.pyx [12/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/transforms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/transforms.pyx [13/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/bootstrap_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/direction/bootstrap_direction_getter.pyx [14/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/shift_twist_convolution.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/denoise/shift_twist_convolution.pyx [15/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/sumsqdiff.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/sumsqdiff.pyx [16/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/expectmax.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/expectmax.pyx [17/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/parzenhist.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/parzenhist.pyx [18/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/closest_peak_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/direction/closest_peak_direction_getter.pyx [19/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/pmf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/direction/pmf.pyx [20/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/crosscorr.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/crosscorr.pyx [21/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/interpolation.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/core/interpolation.pyx [22/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/probabilistic_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/direction/probabilistic_direction_getter.pyx [23/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/recspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/reconst/recspeed.pyx [24/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/eudx_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/reconst/eudx_direction_getter.pyx [25/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/cythonutils.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/segment/cythonutils.pyx [26/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/clustering_algorithms.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/segment/clustering_algorithms.pyx [27/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/quick_squash.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/reconst/quick_squash.pyx [28/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/ptt_direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/direction/ptt_direction_getter.pyx [29/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/vec_val_sum.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/reconst/vec_val_sum.pyx [30/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/metricspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/segment/metricspeed.pyx [31/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/clusteringspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/segment/clusteringspeed.pyx [32/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/featurespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/segment/featurespeed.pyx [33/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/mrf.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/segment/mrf.pyx [34/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/fbcmeasures.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/fbcmeasures.pyx [35/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/utils/fast_numpy.pyx [36/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/omp.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/utils/omp.pyx [37/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/distances.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/distances.pyx [38/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/vox2track.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/vox2track.pyx [39/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/direction_getter.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/direction_getter.pyx [40/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/localtrack.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/localtrack.pyx [41/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/stopping_criterion.pyx [42/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/propspeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/propspeed.pyx [43/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/streamlinespeed.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/tracking/streamlinespeed.pyx [44/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/test_fast_numpy.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/utils/tests/test_fast_numpy.pyx [45/123] /usr/bin/cython -3 --fast-fail --warning-errors --output-file dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so.p/vector_fields.c --include-dir /build/reproducible-path/dipy-1.9.0/.mesonpy-vdb90nco/dipy ../dipy/align/vector_fields.pyx [46/123] cc -Idipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -MF dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o.d -o dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -c dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/bundlemin.c [47/123] cc -Idipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -MF dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o.d -o dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -c dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/shift_twist_convolution.c [48/123] cc -Idipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise 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-I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -MF dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o.d -o dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -c dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/denspeed.c [50/123] cc -Idipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p -Idipy/align -I../dipy/align -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -MF dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o.d -o dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -c dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/transforms.c [51/123] cc -Idipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -MF dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o.d -o dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -c dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/pca_noise_estimate.c [52/123] cc -Idipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -MF dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o.d -o dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -c dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/bootstrap_direction_getter.c [53/123] cc -Idipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p -Idipy/denoise -I../dipy/denoise -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -MF dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o.d -o dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -c dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/enhancement_kernel.c [54/123] cc -Idipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -MF dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o.d -o dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -c dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/probabilistic_direction_getter.c [55/123] cc -Idipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration 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-fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -MF dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o.d -o dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -c dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/pmf.c [57/123] cc -Idipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -MF dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o.d -o dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -c dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/eudx_direction_getter.c [58/123] cc -Idipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -MF dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o.d -o dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -c dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/quick_squash.c [59/123] cc -Idipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p -Idipy/reconst -I../dipy/reconst -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -MF dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o.d -o dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -c dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/vec_val_sum.c [60/123] cc -Idipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p -Idipy/direction -I../dipy/direction -I/usr/lib/python3/dist-packages/numpy/core/include 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dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -c dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/direction_getter.c [70/123] cc -Idipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -MF dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o.d -o dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -c dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/propspeed.c [71/123] cc -Idipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -MF dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o.d -o dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -c dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/fast_numpy.c [72/123] cc -o dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bundlemin.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [73/123] cc -o dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so.p/meson-generated_crosscorr.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [74/123] cc -o dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so.p/meson-generated_expectmax.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [75/123] cc -o dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so.p/meson-generated_parzenhist.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [76/123] cc -o dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so.p/meson-generated_sumsqdiff.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [77/123] cc -o dipy/align/transforms.cpython-312-aarch64-linux-gnu.so dipy/align/transforms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_transforms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [78/123] cc -o dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_denspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [79/123] cc -o dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so.p/meson-generated_enhancement_kernel.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [80/123] cc -o dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so.p/meson-generated_nlmeans_block.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [81/123] cc -o dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pca_noise_estimate.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [82/123] cc -Idipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p -Idipy/core -I../dipy/core -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -MF dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o.d -o dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -c dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/interpolation.c [83/123] cc -o dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so.p/meson-generated_shift_twist_convolution.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [84/123] cc -o dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so.p/meson-generated_interpolation.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [85/123] cc -o dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_bootstrap_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [86/123] cc -o dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_closest_peak_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [87/123] cc -o dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_pmf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [88/123] cc -o dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_probabilistic_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [89/123] cc -o dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_ptt_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [90/123] cc -o dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_eudx_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [91/123] cc -o dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so.p/meson-generated_quick_squash.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [92/123] cc -o dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_recspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [93/123] cc -o dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vec_val_sum.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [94/123] cc -Idipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p -Idipy/utils -I../dipy/utils -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -MF dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o.d -o dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -c dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/omp.c [95/123] cc -o dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clustering_algorithms.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [96/123] cc -o dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_clusteringspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [97/123] cc -o dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so.p/meson-generated_cythonutils.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [98/123] cc -o dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so.p/meson-generated_direction_getter.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [99/123] cc -o dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_propspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [100/123] cc -o dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fast_numpy.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [101/123] cc -o dipy/utils/omp.cpython-312-aarch64-linux-gnu.so dipy/utils/omp.cpython-312-aarch64-linux-gnu.so.p/meson-generated_omp.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [102/123] cc -Idipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -MF dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o.d -o dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -c dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/mrf.c [103/123] cc -o dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so.p/meson-generated_mrf.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [104/123] cc -Idipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -MF dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o.d -o dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -c dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/localtrack.c [105/123] cc -o dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so.p/meson-generated_localtrack.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [106/123] cc -Idipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -MF dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o.d -o dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -c dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/featurespeed.c [107/123] cc -o dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_featurespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [108/123] cc -Idipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p -Idipy/segment -I../dipy/segment -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -MF dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o.d -o dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -c dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/metricspeed.c [109/123] cc -o dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_metricspeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [110/123] cc -Idipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -MF dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o.d -o dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -c dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c In file included from /usr/include/string.h:548, from /usr/include/python3.12/Python.h:26, from dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c:16: In function 'memcpy', inlined from '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state' at dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c:29890:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:10: warning: '*(long unsigned int *)(&__pyx_t_1[0])' may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c: In function '__pyx_f_4dipy_8tracking_18stopping_criterion___pyx_unpickle_StoppingCriterion__set_state': dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/stopping_criterion.c:29864:10: note: '*(long unsigned int *)(&__pyx_t_1[0])' was declared here 29864 | double __pyx_t_1[1]; | ^~~~~~~~~ [111/123] cc -o dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so.p/meson-generated_stopping_criterion.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [112/123] cc -Idipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -MF dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o.d -o dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -c dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/fbcmeasures.c [113/123] cc -o dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so.p/meson-generated_fbcmeasures.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [114/123] cc -Idipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -MF dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o.d -o dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -c dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/distances.c [115/123] cc -o dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so.p/meson-generated_distances.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [116/123] cc -Idipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p -Idipy/tracking -I../dipy/tracking -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -MF dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o.d -o dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -c dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/vox2track.c [117/123] cc -o dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so.p/meson-generated_vox2track.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration 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dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o.d -o dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -c dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/streamlinespeed.c [119/123] cc -o dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so.p/meson-generated_streamlinespeed.c.o -Wl,--as-needed -Wl,--allow-shlib-undefined -shared -fPIC -lm -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp [120/123] cc -Idipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p -Idipy/utils/tests -I../dipy/utils/tests -I/usr/lib/python3/dist-packages/numpy/core/include -Idipy -I../dipy -I/usr/include/python3.12 -I/usr/include/aarch64-linux-gnu/python3.12 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dipy-1.9.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -Wno-cpp -MD -MQ dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -MF dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o.d -o dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/meson-generated_test_fast_numpy.c.o -c dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so.p/test_fast_numpy.c [121/123] cc -o dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so 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/build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_bootstrap_peaks.py [514/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_deterministic.py [515/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_introduction_eudx.py [516/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_pft.py [517/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_probabilistic.py [518/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_ptt.py [519/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_rumba.py [520/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_sfm.py [521/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/tracking_stopping_criterion.py [522/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_advanced.py [523/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_bundles.py [524/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_roi_contour.py [525/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/viz_slice.py [526/526] /build/reproducible-path/dipy-1.9.0/dipy/../doc/examples/workflow_creation.py Successfully built dipy-1.9.0-cp312-cp312-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module find -name func_coef.nii.gz -print -exec chmod 0644 '{}' ';' ./.pybuild/cpython3_3.12_dipy/build/dipy/data/files/func_coef.nii.gz ./dipy/data/files/func_coef.nii.gz make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' # Do not test just after build, lets install and then test make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' py3versions: no X-Python3-Version in control file, using supported versions # Prune duplicate LICENSE file find debian/ -name LICENSE -delete # Only now lets build docs cd doc/ \ && PYTHONPATH=/build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build \ /usr/bin/make html SPHINXOPTS="-D today=\"September 24, 2024\"" make[2]: Entering directory '/build/reproducible-path/dipy-1.9.0/doc' tools/build_modref_templates.py dipy reference /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos Generating docs for dipy: -> dipy Generating docs for dipy.align: -> dipy.align -> dipy.align._public /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py 718 -> dipy.align.cpd -> dipy.align.imaffine -> dipy.align.imwarp -> dipy.align.metrics -> dipy.align.reslice -> dipy.align.scalespace -> dipy.align.streamlinear -> dipy.align.streamwarp Generating docs for dipy.core: -> dipy.core WARNING: Empty - dipy.core -> dipy.core.geometry -> dipy.core.gradients -> dipy.core.graph -> dipy.core.histeq -> dipy.core.ndindex -> dipy.core.onetime -> dipy.core.optimize -> dipy.core.profile -> dipy.core.rng -> dipy.core.sphere -> dipy.core.sphere_stats -> dipy.core.subdivide_octahedron -> dipy.core.wavelet Generating docs for dipy.data: -> dipy.data -> dipy.data.fetcher Generating docs for dipy.denoise: -> dipy.denoise WARNING: Empty - dipy.denoise -> dipy.denoise.adaptive_soft_matching -> dipy.denoise.gibbs -> dipy.denoise.localpca -> dipy.denoise.nlmeans -> dipy.denoise.noise_estimate -> dipy.denoise.non_local_means -> dipy.denoise.patch2self Generating docs for dipy.direction: -> dipy.direction WARNING: Empty - dipy.direction -> dipy.direction.peaks Generating docs for dipy.io: -> dipy.io WARNING: Empty - dipy.io -> dipy.io.dpy -> dipy.io.gradients -> dipy.io.image -> dipy.io.peaks -> dipy.io.pickles -> dipy.io.stateful_tractogram -> dipy.io.streamline -> dipy.io.surface -> dipy.io.utils -> dipy.io.vtk Generating docs for dipy.nn: -> dipy.nn WARNING: Empty - dipy.nn -> dipy.nn.cnn_1d_denoising -> dipy.nn.deepn4 -> dipy.nn.evac -> dipy.nn.histo_resdnn -> dipy.nn.model -> dipy.nn.synb0 -> dipy.nn.utils Generating docs for dipy.reconst: -> dipy.reconst WARNING: Empty - dipy.reconst -> dipy.reconst.base -> dipy.reconst.cache -> dipy.reconst.cross_validation -> dipy.reconst.csdeconv -> dipy.reconst.cti -> dipy.reconst.dki -> dipy.reconst.dki_micro -> dipy.reconst.dsi -> dipy.reconst.dti -> dipy.reconst.forecast -> dipy.reconst.fwdti -> dipy.reconst.gqi -> dipy.reconst.ivim -> dipy.reconst.mapmri -> dipy.reconst.mcsd -> dipy.reconst.msdki -> dipy.reconst.multi_voxel -> dipy.reconst.odf -> dipy.reconst.qtdmri -> dipy.reconst.qti -> dipy.reconst.rumba -> dipy.reconst.sfm -> dipy.reconst.shm -> dipy.reconst.shore -> dipy.reconst.utils Generating docs for dipy.segment: -> dipy.segment WARNING: Empty - dipy.segment -> dipy.segment.bundles -> dipy.segment.clustering -> dipy.segment.fss -> dipy.segment.mask -> dipy.segment.metric -> dipy.segment.threshold -> dipy.segment.tissue Generating docs for dipy.sims: -> dipy.sims WARNING: Empty - dipy.sims -> dipy.sims.phantom -> dipy.sims.voxel Generating docs for dipy.stats: -> dipy.stats WARNING: Empty - dipy.stats -> dipy.stats.analysis Generating docs for dipy.tracking: -> dipy.tracking WARNING: Empty - dipy.tracking -> dipy.tracking._utils WARNING: Empty - dipy.tracking._utils -> dipy.tracking.learning -> dipy.tracking.life -> dipy.tracking.local_tracking -> dipy.tracking.mesh -> dipy.tracking.metrics -> dipy.tracking.streamline -> dipy.tracking.utils Generating docs for dipy.version: -> dipy.version WARNING: Empty - dipy.version Generating docs for dipy.viz: -> dipy.viz WARNING: Empty - dipy.viz -> dipy.viz.gmem -> dipy.viz.horizon WARNING: Empty - dipy.viz.horizon -> dipy.viz.horizon.app -> dipy.viz.horizon.tab WARNING: Empty - dipy.viz.horizon.tab -> dipy.viz.horizon.tab.base -> dipy.viz.horizon.tab.cluster -> dipy.viz.horizon.tab.peak -> dipy.viz.horizon.tab.roi -> dipy.viz.horizon.tab.slice -> dipy.viz.horizon.tab.surface -> dipy.viz.horizon.util -> dipy.viz.horizon.visualizer WARNING: Empty - dipy.viz.horizon.visualizer -> dipy.viz.horizon.visualizer.cluster -> dipy.viz.horizon.visualizer.peak -> dipy.viz.horizon.visualizer.slice -> dipy.viz.horizon.visualizer.surface -> dipy.viz.panel -> dipy.viz.plotting -> dipy.viz.projections -> dipy.viz.regtools -> dipy.viz.streamline Generating docs for dipy.workflows: -> dipy.workflows WARNING: Empty - dipy.workflows -> dipy.workflows.align -> dipy.workflows.base -> dipy.workflows.cli -> dipy.workflows.combined_workflow -> dipy.workflows.denoise -> dipy.workflows.docstring_parser -> dipy.workflows.flow_runner -> dipy.workflows.io -> dipy.workflows.mask -> dipy.workflows.multi_io -> dipy.workflows.nn -> dipy.workflows.reconst -> dipy.workflows.segment -> dipy.workflows.stats -> dipy.workflows.tracking -> dipy.workflows.viz -> dipy.workflows.workflow 16 files written tools/docgen_cmd.py dipy reference_cmd /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos Generating docs for: dipy_align_affine (ImageRegistrationFlow) Done Generating docs for: dipy_align_syn (SynRegistrationFlow) Done Generating docs for: dipy_apply_transform (ApplyTransformFlow) Done Generating docs for: dipy_buan_lmm (LinearMixedModelsFlow) Done Generating docs for: dipy_buan_shapes (BundleShapeAnalysis) Done Generating docs for: dipy_buan_profiles (BundleAnalysisTractometryFlow) Done Generating docs for: dipy_bundlewarp (BundleWarpFlow) Done Generating docs for: dipy_correct_motion (MotionCorrectionFlow) Done Generating docs for: dipy_convert_tractogram (ConvertTractogramFlow) Done Generating docs for: dipy_convert_tensors (ConvertTensorsFlow) Done Generating docs for: dipy_denoise_nlmeans (NLMeansFlow) Done Generating docs for: dipy_denoise_lpca (LPCAFlow) Done Generating docs for: dipy_denoise_mppca (MPPCAFlow) Done Generating docs for: dipy_denoise_patch2self (Patch2SelfFlow) Done Generating docs for: dipy_evac_plus (EVACPlusFlow) Done Generating docs for: dipy_fetch (FetchFlow) Done Generating docs for: dipy_fit_csa (ReconstCSAFlow) Done Generating docs for: dipy_fit_csd (ReconstCSDFlow) Done Generating docs for: dipy_fit_dki (ReconstDkiFlow) Done Generating docs for: dipy_fit_dti (ReconstDtiFlow) Done Generating docs for: dipy_fit_dsi (ReconstDsiFlow) Done Generating docs for: dipy_fit_ivim (ReconstIvimFlow) Done Generating docs for: dipy_fit_mapmri (ReconstMAPMRIFlow) Done Generating docs for: dipy_mask (MaskFlow) Done Generating docs for: dipy_gibbs_ringing (GibbsRingingFlow) Done Generating docs for: dipy_horizon (HorizonFlow) Done Generating docs for: dipy_info (IoInfoFlow) Done Generating docs for: dipy_concatenate_tractograms (ConcatenateTractogramFlow) Done Generating docs for: dipy_labelsbundles (LabelsBundlesFlow) Done Generating docs for: dipy_median_otsu (MedianOtsuFlow) Done Generating docs for: dipy_recobundles (RecoBundlesFlow) Done Generating docs for: dipy_reslice (ResliceFlow) Done Generating docs for: dipy_sh_convert_mrtrix (ConvertSHFlow) Done Generating docs for: dipy_snr_in_cc (SNRinCCFlow) Done Generating docs for: dipy_split (SplitFlow) Done Generating docs for: dipy_track (LocalFiberTrackingPAMFlow) Done Generating docs for: dipy_track_pft (PFTrackingPAMFlow) Done Generating docs for: dipy_slr (SlrWithQbxFlow) Done Generating index.rst Done Build API docs...done. # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="September 24, 2024" . _build/html Running Sphinx v7.4.7 loading translations [en]... done Initializing Examples folder revamp plugin... Initializing GitHub plugin making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'python' from /usr/share/doc/python3/html/objects.inv... [autosummary] generating autosummary for: api_changes.rst, cite.rst, devel/benchmarking.rst, devel/coding_style_guideline.rst, devel/commit_codes.rst, devel/gitwash/configure_git.rst, devel/gitwash/development_workflow.rst, devel/gitwash/dot2_dot3.rst, devel/gitwash/following_latest.rst, devel/gitwash/forking_hell.rst, ..., theory/sh_basis.rst, theory/spherical.rst, user_guide/data.rst, user_guide/dataset_list.rst, user_guide/dependencies.rst, user_guide/getting_started.rst, user_guide/index.rst, user_guide/installation.rst, user_guide/introduction.rst, user_guide/mission.rst WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos WARNING:root:This model requires Tensorflow. Please install these packages using pip. If using mac, please refer to this link for installation. https://github.com/apple/tensorflow_macos /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/__init__.py:22: UserWarning: You do not have FURY installed. Therefore, 3D visualization functions will not work for you. Please install or upgrade FURY using pip install -U furyFor detailed installation instructions visit: https://fury.gl/ warnings.warn( building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 138 source files that are out of date updating environment: [new config] 138 added, 0 changed, 0 removed reading sources... [ 1%] api_changes reading sources... [ 1%] cite reading sources... [ 2%] devel/benchmarking reading sources... [ 3%] devel/coding_style_guideline reading sources... [ 4%] devel/commit_codes reading sources... [ 4%] devel/gitwash/configure_git reading sources... [ 5%] devel/gitwash/development_workflow reading sources... [ 6%] devel/gitwash/dot2_dot3 reading sources... [ 7%] devel/gitwash/following_latest reading sources... [ 7%] devel/gitwash/forking_hell reading sources... [ 8%] devel/gitwash/git_development reading sources... [ 9%] devel/gitwash/git_install reading sources... [ 9%] devel/gitwash/git_intro reading sources... 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[ 67%] reference_cmd/dipy_recobundles reading sources... [ 67%] reference_cmd/dipy_reslice reading sources... [ 68%] reference_cmd/dipy_sh_convert_mrtrix reading sources... [ 69%] reference_cmd/dipy_slr reading sources... [ 70%] reference_cmd/dipy_snr_in_cc reading sources... [ 70%] reference_cmd/dipy_split reading sources... [ 71%] reference_cmd/dipy_track reading sources... [ 72%] reference_cmd/dipy_track_pft reading sources... [ 72%] reference_cmd/index reading sources... [ 73%] release_notes/release0.10 reading sources... [ 74%] release_notes/release0.11 reading sources... [ 75%] release_notes/release0.12 reading sources... [ 75%] release_notes/release0.13 reading sources... [ 76%] release_notes/release0.14 reading sources... [ 77%] release_notes/release0.15 reading sources... [ 78%] release_notes/release0.16 reading sources... [ 78%] release_notes/release0.6 reading sources... [ 79%] release_notes/release0.7 reading sources... [ 80%] release_notes/release0.8 reading sources... [ 80%] release_notes/release0.9 reading sources... [ 81%] release_notes/release1.0 reading sources... [ 82%] release_notes/release1.1 reading sources... [ 83%] release_notes/release1.2 reading sources... [ 83%] release_notes/release1.3 reading sources... [ 84%] release_notes/release1.4 reading sources... [ 85%] release_notes/release1.4.1 reading sources... [ 86%] release_notes/release1.5 reading sources... [ 86%] release_notes/release1.6 reading sources... [ 87%] release_notes/release1.7 reading sources... [ 88%] release_notes/release1.8 reading sources... [ 88%] release_notes/release1.9 reading sources... [ 89%] stateoftheart reading sources... [ 90%] subscribe reading sources... [ 91%] theory/b_and_q reading sources... [ 91%] theory/bmatrix reading sources... [ 92%] theory/gqi reading sources... [ 93%] theory/index reading sources... [ 93%] theory/sh_basis reading sources... [ 94%] theory/spherical reading sources... [ 95%] user_guide/data reading sources... [ 96%] user_guide/dataset_list reading sources... [ 96%] user_guide/dependencies reading sources... [ 97%] user_guide/getting_started reading sources... [ 98%] user_guide/index reading sources... [ 99%] user_guide/installation reading sources... [ 99%] user_guide/introduction reading sources... [100%] user_guide/mission /build/reproducible-path/dipy-1.9.0/doc/api_changes.rst:30: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/api_changes.rst:33: WARNING: Block quote ends without a blank line; unexpected unindent. ../benchmarks/README.rst:18: WARNING: Title underline too short. Getting Started 🏃‍♂️ ------------------ ../benchmarks/README.rst:18: WARNING: Title underline too short. Getting Started 🏃‍♂️ ------------------ /build/reproducible-path/dipy-1.9.0/doc/devel/benchmarking.rst:: ERROR: Anonymous hyperlink mismatch: 1 references but 0 targets. See "backrefs" attribute for IDs. links_names.inc:80: WARNING: Duplicate explicit target name: "cython". /build/reproducible-path/dipy-1.9.0/doc/devel/make_release.rst:123: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/devel/toolchain.rst:39: WARNING: Mismatch: both interpreted text role prefix and reference suffix. /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:26: WARNING: image file not readable: images/spitfire_0.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:31: WARNING: image file not readable: images/spitfire_x.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:36: WARNING: image file not readable: images/spitfire_y.png /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst:41: WARNING: image file not readable: images/spitfire_hoped.png /build/reproducible-path/dipy-1.9.0/doc/index.rst:99: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/index.rst:119: WARNING: toctree contains reference to nonexisting document 'examples_built/index' /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst:290: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/basic_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst:118: WARNING: duplicate citation Yeh18, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst:128: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/buan_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:52: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:113: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:62: ERROR: Error in "image" directive: no content permitted. image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:62: WARNING: Substitution definition "image1" empty or invalid. .. |image1| image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:65: ERROR: Error in "image" directive: no content permitted. image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_LPCA.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:65: WARNING: Substitution definition "image2" empty or invalid. .. |image2| image:: https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_LPCA.png?raw=true :align: middle /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:142: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:72: ERROR: Undefined substitution referenced: "image1". /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:72: ERROR: Undefined substitution referenced: "image2". /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst:106: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst:163: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/doc/interfaces/tracking_flow.rst:204: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/basic_flow.rst /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:31: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:41: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:: ERROR: Anonymous hyperlink mismatch: 1 references but 0 targets. See "backrefs" attribute for IDs. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst:39::1: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst:73::1: WARNING: Inline strong start-string without end-string. WARNING: Failed to get a function signature for dipy.align.VerbosityLevels: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public.write_mapping:7: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.align._public._METHOD_DICT: {'center_of_mass': (functools.partial(, pipeline=['center_of_mass']), None), 'translation': (functools.partial(, pipeline=['translation']), ), 'rigid_isoscaling': (functools.partial(, pipeline=['rigid_isoscaling']), ), 'rigid_scaling': (functools.partial(, pipeline=['rigid_scaling']), ), 'rigid': (functools.partial(, pipeline=['rigid']), ), 'affine': (functools.partial(, pipeline=['affine']), )} is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/_public.py:docstring of dipy.align._public._METHOD_DICT:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineMap.transform:37: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineMap.transform_inverse:37: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine.AffineRegistration.optimize:38: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.align.imaffine._transform_method: {(2, 'nearest'): , (3, 'nearest'): , (2, 'linear'): , (3, 'linear'): } is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imaffine.py:docstring of dipy.align.imaffine._transform_method:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/imwarp.py:docstring of dipy.align.imwarp.SymmetricDiffeomorphicRegistration.update:29: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.align.imwarp.RegistrationStages: is not a callable object WARNING: Failed to get a function signature for dipy.align.imwarp.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/metrics.py:docstring of dipy.align.metrics.v_cycle_3d:9: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.align.scalespace.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:50: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:51: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:79: WARNING: Duplicate explicit target name: "garyfallidis14". WARNING: Failed to get a function signature for dipy.align.streamlinear.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:18: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:20: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:37: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:62: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:63: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:66: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:68: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:43: WARNING: Duplicate explicit target name: "garyfallidis15". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:44: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:47: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:49: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamwarp.py:docstring of dipy.align.streamwarp.bundlewarp_vector_filed:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineDistanceMetric.__init__:9: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:66: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.bundle_min_distance_fast:32: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:28: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:47: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.BundleMinDistanceMetric:12: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:75: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/registration_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:79: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.StreamlineLinearRegistration.__init__:82: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundle_segmentation_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.progressive_slr:37: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:62: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.slr_with_qbx:67: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:43: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamlinear.py:docstring of dipy.align.streamlinear.groupwise_slr:48: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/align/streamwarp.py:docstring of dipy.align.streamwarp.bundlewarp:49: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.core.rst:42::1: WARNING: Inline strong start-string without end-string. WARNING: Failed to get a function signature for dipy.core.geometry._TUPLE2AXES: {(0, 0, 0, 0): 'sxyz', (0, 0, 1, 0): 'sxyx', (0, 1, 0, 0): 'sxzy', (0, 1, 1, 0): 'sxzx', (1, 0, 0, 0): 'syzx', (1, 0, 1, 0): 'syzy', (1, 1, 0, 0): 'syxz', (1, 1, 1, 0): 'syxy', (2, 0, 0, 0): 'szxy', (2, 0, 1, 0): 'szxz', (2, 1, 0, 0): 'szyx', (2, 1, 1, 0): 'szyz', (0, 0, 0, 1): 'rzyx', (0, 0, 1, 1): 'rxyx', (0, 1, 0, 1): 'ryzx', (0, 1, 1, 1): 'rxzx', (1, 0, 0, 1): 'rxzy', (1, 0, 1, 1): 'ryzy', (1, 1, 0, 1): 'rzxy', (1, 1, 1, 1): 'ryxy', (2, 0, 0, 1): 'ryxz', (2, 0, 1, 1): 'rzxz', (2, 1, 0, 1): 'rxyz', (2, 1, 1, 1): 'rzyz'} is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:3: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry._TUPLE2AXES:8: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry.perpendicular_directions:32: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/geometry.py:docstring of dipy.core.geometry.perpendicular_directions:34: WARNING: Bullet list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.core.gradients.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.gradient_table_from_bvals_bvecs:40: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.reorient_bvecs:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.params_to_btens:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/gradients.py:docstring of dipy.core.gradients.params_to_btens:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:61: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:69: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.Optimizer.__init__:88: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.core.sphere.octahedron_vertices: array([[ 1., 0., 0.], [-1., 0., 0.], [ 0., 1., 0.], [ 0., -1., 0.], [ 0., 0., 1.], [ 0., 0., -1.]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_vertices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.octahedron_faces: array([[0, 4, 2], [1, 5, 3], [4, 2, 1], [5, 3, 0], [1, 4, 3], [0, 5, 2], [0, 4, 3], [1, 5, 2]], dtype=uint16) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.octahedron_faces:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.icosahedron_vertices: array([[ 0.85065081, 0.52573111, 0. ], [-0.85065081, 0.52573111, 0. ], [ 0.85065081, -0.52573111, 0. ], [-0.85065081, -0.52573111, 0. ], [ 0.52573111, 0. , 0.85065081], [ 0.52573111, 0. , -0.85065081], [-0.52573111, 0. , 0.85065081], [-0.52573111, 0. , -0.85065081], [ 0. , 0.85065081, 0.52573111], [ 0. , -0.85065081, 0.52573111], [ 0. , 0.85065081, -0.52573111], [ 0. , -0.85065081, -0.52573111]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_vertices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.icosahedron_faces: array([[ 8, 4, 0], [ 2, 5, 0], [ 2, 5, 11], [ 9, 2, 11], [ 2, 4, 0], [ 9, 2, 4], [10, 8, 1], [10, 8, 0], [10, 5, 0], [ 6, 3, 1], [ 9, 6, 3], [ 6, 8, 1], [ 6, 8, 4], [ 9, 6, 4], [ 7, 10, 1], [ 7, 10, 5], [ 7, 3, 1], [ 7, 3, 11], [ 9, 3, 11], [ 7, 5, 11]], dtype=uint16) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/sphere.py:docstring of dipy.core.sphere.icosahedron_faces:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.core.sphere.unit_octahedron: is not a callable object WARNING: Failed to get a function signature for dipy.core.sphere.unit_icosahedron: is not a callable object WARNING: Failed to get a function signature for dipy.core.sphere.hemi_icosahedron: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/core/optimize.py:docstring of dipy.core.optimize.PositiveDefiniteLeastSquares.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:109::1: WARNING: Inline interpreted text or phrase reference start-string without end-string. WARNING: Failed to get a function signature for dipy.data.DATA_DIR: '/build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/files' is not a callable object WARNING: Failed to get a function signature for dipy.data.default_sphere: is not a callable object WARNING: Failed to get a function signature for dipy.data.small_sphere: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_data:15: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher._make_fetcher..fetcher:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_qtdMRI_test_retest_2subjects:1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_mni_template:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.read_mni_template:39: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hcp:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hbn:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hbn:24: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:28::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.data.rst:109::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/__init__.py:docstring of dipy.data.load_sdp_constraints:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/data/fetcher.py:docstring of dipy.data.fetcher.fetch_hcp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/gibbs.py:docstring of dipy.denoise.gibbs.gibbs_removal:38: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/gibbs.py:docstring of dipy.denoise.gibbs.gibbs_removal:40: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:12: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.dimensionality_problem_message:14: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.genpca:56: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:63: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:67: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:44: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:56: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:57: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:61: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.piesno:62: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:38: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:39: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:42: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:32: WARNING: Duplicate explicit target name: "coupe11". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/nlmeans.py:docstring of dipy.denoise.nlmeans.nlmeans:18: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/adaptive_soft_matching.py:docstring of dipy.denoise.adaptive_soft_matching.adaptive_soft_matching:30: WARNING: duplicate citation Coupe11, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:27: WARNING: duplicate citation Coupe08, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/non_local_means.py:docstring of dipy.denoise.non_local_means.non_local_means:32: WARNING: duplicate citation Coupe11, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst:50::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst:50::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.genpca:10: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:39: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:39: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:44: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.localpca:47: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/localpca.py:docstring of dipy.denoise.localpca.mppca:22: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:26: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/denoise/noise_estimate.py:docstring of dipy.denoise.noise_estimate.estimate_sigma:26: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/dpy.py:docstring of dipy.io.dpy.Dpy.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/dpy.py:docstring of dipy.io.dpy.Dpy.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/stateful_tractogram.py:docstring of dipy.io.stateful_tractogram.StatefulTractogram.from_sft:18: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.io.stateful_tractogram.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/streamline.py:docstring of dipy.io.streamline.load_generator:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/streamline.py:docstring of dipy.io.streamline.save_generator:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.nifti1_symmat:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.is_reference_info_valid:6: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.is_reference_info_valid:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/io/utils.py:docstring of dipy.io.utils.get_reference_info:8: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.nn.deepn4.logger: is not a callable object WARNING: Failed to get a function signature for dipy.nn.evac.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/histo_resdnn.py:docstring of dipy.nn.histo_resdnn.HistoResDNN.__init__:29: WARNING: Duplicate explicit target name: "1". WARNING: Failed to get a function signature for dipy.nn.histo_resdnn.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.__init__:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.__init__:22: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/synb0.py:docstring of dipy.nn.synb0.Synb0.predict:29: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.nn.synb0.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.normalize:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.normalize:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.unnormalize:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/nn/utils.py:docstring of dipy.nn.utils.unnormalize:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:14: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:19: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.coeff_of_determination:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cross_validation.py:docstring of dipy.reconst.cross_validation.kfold_xval:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:24: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:44: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:48: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:51: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:53: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:20: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:22: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:30: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:35: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:45: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask:46: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.estimate_response:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:35: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.response_from_mask_ssst:41: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response_ssst:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.auto_response_ssst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.recursive_response:53: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.__init__:9: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.predict:10: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorModel.predict:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorFit.__init__:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.CorrelationTensorFit.predict:11: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.multi_gaussian_k_from_c:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.split_cti_params:15: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:9: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.cti_prediction:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/cti.py:docstring of dipy.reconst.cti.ls_fit_cti:26: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:14: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:16: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:16: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:17: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.__init__:28: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.predict:9: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisModel.predict:10: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.__init__:16: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.__init__:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:48: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:51: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:54: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:43: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:67: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:70: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:73: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.carlson_rf:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:34: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:41: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:45: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:71: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:74: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:77: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:58: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:61: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_maximum:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_maximum:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:45: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:49: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:4: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:19: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.dki_prediction:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.ls_fit_dki:28: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:35: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.split_dki_param:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:14: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:17: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:17: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:27: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.awf:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.axonal_diffusivity:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_ad:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_evals:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_rd:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.restricted_evals:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:12: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:32: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:40: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.dkimicro_prediction:1: WARNING: Inline interpreted text or phrase reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:20: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:22: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:25: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:26: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.create_qspace:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.create_qtable:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.hanning_filter:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.LR_deconv:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:21: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:21: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:48: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:51: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:54: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:5: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:9: CRITICAL: Unexpected section title. Returns ------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:15: CRITICAL: Unexpected section title. Notes ----- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.adc:21: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.linearity:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.planarity:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.sphericity:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.linearity:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.planarity:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.sphericity:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.wls_fit_tensor:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.ols_fit_tensor:42: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_indices: array([[0, 1, 3], [1, 2, 4], [3, 4, 5]]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_indices:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_rows: array([0, 1, 1, 2, 2, 2]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_rows:87: ERROR: Unexpected indentation. WARNING: Failed to get a function signature for dipy.reconst.dti._lt_cols: array([0, 0, 1, 0, 1, 2]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti._lt_cols:87: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.quantize_evecs:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:13: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:17: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:21: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:15: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:15: WARNING: Inline strong start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorFit.__init__:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorFit.__init__:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.lower_triangular_to_cholesky:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.cholesky_to_lower_triangular:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:21: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:23: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:16: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:78: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelTRR.__init__:81: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:17: WARNING: Literal block expected; none found. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:31: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.__init__:37: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:24: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:28: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:94: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:98: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:103: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:107: WARNING: Duplicate explicit target name: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:111: WARNING: Duplicate explicit target name: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:115: WARNING: Duplicate explicit target name: "6". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:12: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:13: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:10: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:11: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:13: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:9: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:10: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:13: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:9: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:13: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:14: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:7: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:8: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:11: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:12: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.isotropic_scale_factor:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.isotropic_scale_factor:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:18: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:28: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:24: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:28: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:19: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:19: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:17: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:23: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation:23: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:19: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:30: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:44: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:47: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:51: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_tissue_basis:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_tissue_basis:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.multi_shell_fiber_response:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.mask_for_response_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.mask_for_response_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.response_from_mask_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.response_from_mask_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.auto_response_msmt:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.auto_response_msmt:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.msd:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.msk:11: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:16: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:21: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.msk_from_awf:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:28: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.wls_fit_msdki:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:19: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.norm_of_laplacian_signal:14: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:20: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:17: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:23: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:22: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qtdmri_to_mapmri_coef:15: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:20: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_to_mapmri_matrix:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_isotropic_to_mapmri_matrix:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_laplacian_reg_matrix:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_isotropic_laplacian_reg_matrix:8: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_iso_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_iso_reg_matrix_q:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part1_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part23_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.part4_reg_matrix_tau:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.generalized_crossvalidation:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.GCV_cost_function:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.qtdmri_number_of_coefficients:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:15: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:21: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:24: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:23: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:68: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:77: WARNING: Duplicate explicit target name: "2". WARNING: Failed to get a function signature for dipy.reconst.rumba.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.generate_kernel:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.generate_kernel:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.IsotropicFit.__init__:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.__init__:48: WARNING: Duplicate explicit target name: "rokem2014". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:27: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.fit:36: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:56: WARNING: Duplicate explicit target name: "rokem2015". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:61: WARNING: Duplicate explicit target name: "rokem2014". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.CsaOdfModel:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.OpdtModel:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.OpdtModel:9: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.QballModel:5: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_rh:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:12: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:14: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.bootstrap_data_array:17: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:35: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:38: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:42: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:36: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:40: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:39: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:42: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:46: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.anisotropic_power:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:31: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:24: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:27: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:31: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:7: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:6: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:7: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:14: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:15: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/utils.py:docstring of dipy.reconst.utils.dki_design_matrix:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:40: WARNING: Footnote [7] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:43: WARNING: Footnote [8] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:47: WARNING: Footnote [9] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.gen_dirac:20: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux_from_index:1: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux:1: ERROR: Undefined substitution referenced: "m". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.SparseFascicleModel.__init__:48: WARNING: duplicate citation Rokem2014, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:56: WARNING: duplicate citation Rokem2015, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/sfm.py:docstring of dipy.reconst.sfm.sfm_design_matrix:61: WARNING: duplicate citation Rokem2014, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:70::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:120::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:136::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:203::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:240::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:326::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:364::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:481::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:544::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:564::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:19: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:29: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:30: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSphericalDeconvModel.__init__:33: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.ConstrainedSDTModel.__init__:26: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.forward_sdt_deconv_mat:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.csdeconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Unknown target name: "lambda". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.odf_sh_to_sharp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/csdeconv.py:docstring of dipy.reconst.csdeconv.mask_for_response_ssst:24: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.ak:30: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.kfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.mkt:22: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:6: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.DiffusionKurtosisFit.rk:38: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_diffusion_variance:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.directional_kurtosis:20: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.apparent_kurtosis_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:13: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:32: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:32: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.radial_kurtosis:43: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:13: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:34: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:34: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.axial_kurtosis:37: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.mean_kurtosis_tensor:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.kurtosis_fractional_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.ls_fit_dki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki.py:docstring of dipy.reconst.dki.cls_fit_dki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructureModel.predict:23: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.awf:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.axonal_diffusivity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_ad:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_evals:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.hindered_rd:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.restricted_evals:5: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.KurtosisMicrostructuralFit.tortuosity:7: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.axonal_water_fraction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.diffusion_components:34: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dki_micro.py:docstring of dipy.reconst.dki_micro.dkimicro_prediction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.msd_discrete:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.DiffusionSpectrumDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dsi.py:docstring of dipy.reconst.dsi.LR_deconv:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.linearity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.planarity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.TensorFit.sphericity:4: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.geodesic_anisotropy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.isotropic:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.deviatoric:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.deviatoric:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.mode:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.mode:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.linearity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.planarity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.sphericity:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.wls_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.ols_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/dti.py:docstring of dipy.reconst.dti.restore_fit_tensor:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel:7: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/forecast.py:docstring of dipy.reconst.forecast.ForecastModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:9: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.FreeWaterTensorModel.__init__:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.fwdti_prediction:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.wls_fit_tensor:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.lower_triangular_to_cholesky:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.cholesky_to_lower_triangular:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/gqi.py:docstring of dipy.reconst.gqi.GeneralizedQSamplingModel.__init__:28: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/ivim.py:docstring of dipy.reconst.ivim.IvimModelVP.ivim_mix_cost_one:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel:3: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:4: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:8: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:8: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "4". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:17: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:21: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriModel.__init__:50: ERROR: Duplicate target name, cannot be used as a unique reference: "6". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_parallel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.ng_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.norm_of_laplacian_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.MapmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.b_mat_isotropic:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_1d:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_phi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_1d:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_psi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_phi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_signal_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_psi_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_radial_pdf_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_odf_sh_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_laplacian_reg_matrix_from_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_isotropic_index_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_u:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_t:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.map_laplace_s:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_STU_reg_matrices:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.mapmri_laplacian_reg_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation_array:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mapmri.py:docstring of dipy.reconst.mapmri.generalized_crossvalidation:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:6: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/mcsd.py:docstring of dipy.reconst.mcsd.MultiShellDeconvModel.__init__:11: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2di:12: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2f:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.MeanDiffusionKurtosisFit.smt2uFA:13: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.msk_from_awf:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.awf_from_msk:19: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/msdki.py:docstring of dipy.reconst.msdki.wls_fit_msdki:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/odf.py:docstring of dipy.reconst.odf.gfa:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriModel:1: ERROR: Unknown target name: "n". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.norm_of_laplacian_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.odf_sh:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qiv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.qtdmri_to_mapmri_coef:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtap:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtop:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qtdmri.py:docstring of dipy.reconst.qtdmri.QtdmriFit.rtpp:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1966: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_signal_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1981: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_isotropic_signal_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1991: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_eap_matrix". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.reconst.rst:1996: ERROR: Duplicate target name, cannot be used as a unique reference: "qtdmri_isotropic_eap_matrix". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.QtiModel.__init__:14: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/qti.py:docstring of dipy.reconst.qti.dtd_covariance:16: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.RumbaSDModel.__init__:13: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.mbessel_ratio:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/rumba.py:docstring of dipy.reconst.rumba.rumba_deconv_global:1: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux_from_index:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_tournier:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sh_descoteaux:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_mrtrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.real_sym_sh_basis:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sf_to_sh:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf:15: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.sh_to_sf_matrix:14: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_from_legacy:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shm.py:docstring of dipy.reconst.shm.convert_sh_to_legacy:11: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel:1: ERROR: Duplicate target name, cannot be used as a unique reference: "5". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreModel.__init__:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.msd:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.ShoreFit.rtop_signal:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_pdf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/shore.py:docstring of dipy.reconst.shore.shore_matrix_odf:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.evaluate_results:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:23: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:25: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:55: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:56: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:79: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:25: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:27: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:57: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:58: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:59: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:81: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:86: WARNING: Explicit markup ends without a blank line; unexpected unindent. WARNING: Failed to get a function signature for dipy.segment.bundles.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.ba_analysis:24: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.cluster_bundle:23: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:12: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:26: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:27: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:32: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.Cluster.assign:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.ClusterMap.add_cluster:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.ClusterMap.remove_cluster:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.QuickBundlesX:17: WARNING: Duplicate explicit target name: "garyfallidis12". WARNING: Failed to get a function signature for dipy.segment.clustering.logger: is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:31: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:35: WARNING: Duplicate explicit target name: "garyfallidis16". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/fss.py:docstring of dipy.segment.fss.FastStreamlineSearch.radius_search:30: WARNING: Duplicate explicit target name: "stonge2022". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/mask.py:docstring of dipy.segment.mask.median_otsu:57: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/metric.py:docstring of dipy.segment.metric.mdf:20: WARNING: Duplicate explicit target name: "garyfallidis12". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:18: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.__init__:38: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.recognize:79: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.RecoBundles.refine:81: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_adjacency:22: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/tracking_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.ba_analysis:24: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.cluster_bundle:23: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:26: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/bundles.py:docstring of dipy.segment.bundles.bundle_shape_similarity:32: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.QuickBundlesX:17: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:31: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/clustering.py:docstring of dipy.segment.clustering.qbx_and_merge:35: WARNING: duplicate citation Garyfallidis16, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/fss.py:docstring of dipy.segment.fss.FastStreamlineSearch.radius_search:30: WARNING: duplicate citation StOnge2022, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/segment/metric.py:docstring of dipy.segment.metric.mdf:20: WARNING: duplicate citation Garyfallidis12, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst WARNING: Failed to get a function signature for dipy.sims.voxel.diffusion_evals: array([0.0015, 0.0004, 0.0004]) is not a callable object /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:84: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:85: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.diffusion_evals:87: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:33: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:35: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.sticks_and_ball:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.callaghan_perpendicular:19: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:37: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:40: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor:31: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor:34: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:8: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_dki:55: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.kurtosis_element:37: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.dki_signal:29: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_odf:22: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_rtop:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_rtop:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_pdf:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_pdf:25: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.single_tensor_msd:18: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.multi_tensor_msd:20: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.sims.rst:54::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.sims.rst:54::1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/phantom.py:docstring of dipy.sims.phantom.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/phantom.py:docstring of dipy.sims.phantom.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.add_noise:27: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.callaghan_perpendicular:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.cylinders_and_ball_soderman:1: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/sims/voxel.py:docstring of dipy.sims.voxel.kurtosis_element:33: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/stats/analysis.py:docstring of dipy.stats.analysis.assignment_map:22: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/stats/analysis.py:docstring of dipy.stats.analysis.assignment_map:21: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/tracking/utils.py:docstring of dipy.tracking.utils.transform_tracking_output:13: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/app.py:docstring of dipy.viz.horizon.app.horizon:71: WARNING: Duplicate explicit target name: "horizon_ismrm19". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/tab/base.py:docstring of dipy.viz.horizon.tab.base.HorizonTab.register_elements:5: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.is_binary_image:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.check_peak_size:7: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/util.py:docstring of dipy.viz.horizon.util.check_peak_size:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/visualizer/peak.py:docstring of dipy.viz.horizon.visualizer.peak.PeakActor:17: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/panel.py:docstring of dipy.viz.panel.slicer_panel:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/panel.py:docstring of dipy.viz.panel.slicer_panel:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.overlay_images:30: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.plot_2d_diffeomorphic_map:48: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.plot_slices:19: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/regtools.py:docstring of dipy.viz.regtools.overlay_slices:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/viz/horizon/app.py:docstring of dipy.viz.horizon.app.horizon:71: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.viz.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser:17: WARNING: Inline literal start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:11: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:30: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:32: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:33: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:54: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:61: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.ImageRegistrationFlow.run:29: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.ApplyTransformFlow.run:11: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.NLMeansFlow.run:29: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:53: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:63: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:30: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:31: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:35: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:36: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:26: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:27: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:30: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.GibbsRingingFlow.run:31: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser.Reader.__init__:2: CRITICAL: Unexpected section title. Parameters ---------- /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/docstring_parser.py:docstring of dipy.workflows.docstring_parser.Reader.__init__:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:9: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/io.py:docstring of dipy.workflows.io.SplitFlow.run:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/nn.py:docstring of dipy.workflows.nn.EVACPlusFlow.run:20: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:77: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:81: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:85: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstCSDFlow.run:66: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstCSAFlow.run:53: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:66: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:70: WARNING: Duplicate explicit target name: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:75: WARNING: Duplicate explicit target name: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstRUMBAFlow.run:106: WARNING: Duplicate explicit target name: "1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:54: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:59: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.LabelsBundlesFlow.run:16: WARNING: Duplicate explicit target name: "garyfallidis17". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:25: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:26: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:11: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:13: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.LinearMixedModelsFlow.save_lmm_plot:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:24: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:25: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:29: WARNING: Duplicate explicit target name: "chandio2020". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:30: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:10: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDtiFlow.run:88: WARNING: Footnote [4] is not referenced. /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:17: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:53: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:57: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.SlrWithQbxFlow.run:60: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.segment.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/align.py:docstring of dipy.workflows.align.BundleWarpFlow.run:47: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.align.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.NLMeansFlow.run:28: WARNING: duplicate citation Descoteaux08, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.denoise.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstIvimFlow.run:44: WARNING: duplicate citation Stejskal65, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/reconstruction_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstIvimFlow.run:50: WARNING: duplicate citation LeBihan84, other instance in /build/reproducible-path/dipy-1.9.0/doc/interfaces/reconstruction_flow.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:54: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.RecoBundlesFlow.run:58: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.stats.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/segment.py:docstring of dipy.workflows.segment.LabelsBundlesFlow.run:16: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleAnalysisTractometryFlow.run:25: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.BundleShapeAnalysis.run:24: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/stats.py:docstring of dipy.workflows.stats.buan_bundle_profiles:29: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/viz.py:docstring of dipy.workflows.viz.HorizonFlow.run:71: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.viz.rst /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:15: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.LPCAFlow.run:41: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/denoise.py:docstring of dipy.workflows.denoise.MPPCAFlow.run:19: ERROR: Duplicate target name, cannot be used as a unique reference: "2". /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst:640: ERROR: Duplicate target name, cannot be used as a unique reference: "io_iterator". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstDkiFlow.run:27: ERROR: Duplicate target name, cannot be used as a unique reference: "3". /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/workflows/reconst.py:docstring of dipy.workflows.reconst.ReconstRUMBAFlow.run:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1". /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:30: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:34: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_affine.rst:35: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_syn.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_align_syn.rst:34: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_apply_transform.rst:17: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst:38: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst:37: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:25: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:27: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst:39: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_profiles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_bundlewarp.rst:57: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_bundlewarp.rst:56: WARNING: duplicate citation Chandio2023, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_lpca.rst:48: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_lpca.rst:45: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:24: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:26: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_mppca.rst:41: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:43: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_nlmeans.rst:42: WARNING: duplicate citation Descoteaux08, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:34: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:50: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_denoise_patch2self.rst:49: WARNING: duplicate citation Fadnavis20, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:38: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_evac_plus.rst:37: WARNING: duplicate citation Park2022, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csa.rst:58: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csa.rst:57: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:39: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:43: ERROR: Unexpected indentation. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:44: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:66: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_csd.rst:65: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:34: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:64: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:61: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dki.rst:62: WARNING: Footnote [2] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:64: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:59: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:60: WARNING: Footnote [2] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:61: WARNING: Footnote [3] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_dti.rst:62: WARNING: Footnote [4] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:32: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:53: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:51: WARNING: duplicate citation Stejskal65, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_ivim.rst:52: WARNING: duplicate citation LeBihan84, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_mapmri.rst:39: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_fit_mapmri.rst:41: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_gibbs_ringing.rst:40: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_gibbs_ringing.rst:38: WARNING: Footnote [1] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_gibbs_ringing.rst:39: WARNING: Footnote [2] is not referenced. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:35: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:37: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:45: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:47: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:51: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:53: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:54: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:70: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_horizon.rst:69: WARNING: duplicate citation Horizon_ISMRM19, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_labelsbundles.rst:36: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_labelsbundles.rst:35: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_median_otsu.rst:31: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:70: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:68: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_labelsbundles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst:69: WARNING: duplicate citation Chandio2020, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_buan_shapes.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:33: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:61: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:33: ERROR: Undefined substitution referenced: "num_threads + 1". /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:58: WARNING: duplicate citation Garyfallidis15, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:59: WARNING: duplicate citation Garyfallidis14, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference/dipy.workflows.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_slr.rst:60: WARNING: duplicate citation Garyfallidis17, other instance in /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_recobundles.rst /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_snr_in_cc.rst:27: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/reference_cmd/dipy_split.rst:22: WARNING: Option list ends without a blank line; unexpected unindent. /build/reproducible-path/dipy-1.9.0/doc/release_notes/release1.4.1.rst:46: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/release_notes/release1.4.1.rst:81: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/dipy-1.9.0/doc/release_notes/release1.4.1.rst:82: WARNING: Inline emphasis start-string without end-string. looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/dipy-1.9.0/doc/devel/gitwash/dot2_dot3.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/developers.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/gimbal_lock.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/recipes.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/subscribe.rst: WARNING: document isn't included in any toctree /build/reproducible-path/dipy-1.9.0/doc/theory/b_and_q.rst: WARNING: document isn't 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[100%] user_guide/mission /build/reproducible-path/dipy-1.9.0/doc/index.rst:31: WARNING: 'any' reference target not found: examples_built/index /build/reproducible-path/dipy-1.9.0/doc/interfaces/bundlewarp_registration_flow.rst:32: WARNING: citation not found: Chandio23 /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:104: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:104: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_original.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:107: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:107: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_denoise_MPPCA.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:150: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:150: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/cfin_multib_original.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:153: WARNING: Could not obtain image size. :scale: option is ignored. /build/reproducible-path/dipy-1.9.0/doc/interfaces/denoise_flow.rst:153: WARNING: Cannot scale image! Could not get size from "https://github.com/dipy/dipy_data/blob/master/cfin_multib_denoise_NLMEANS.png?raw=true": Can only read local images. /build/reproducible-path/dipy-1.9.0/doc/old_highlights.rst:296: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/old_highlights.rst:299: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/old_news.rst:37: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/recipes.rst:15: WARNING: undefined label: 'sphx_glr_examples_built_file_formats_streamline_formats.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:11: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:17: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_restore_dti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:23: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_fwdti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:29: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:35: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:41: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dki_micro.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:47: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_msdki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:53: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csa.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:65: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_ivim.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:71: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_ivim.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:83: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dsi.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:89: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_dsid.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:95: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_gqi.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:101: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_sfm.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:107: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csa.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:113: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_shore.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:119: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mapmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:125: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mapmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:137: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_csd.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:143: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_mcsd.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:149: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_forecast.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:155: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_rumba.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:161: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qti.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:167: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qtiplus.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:179: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_qtdmri.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:191: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_msdki.py' /build/reproducible-path/dipy-1.9.0/doc/reconstruction_models_list.rst:197: WARNING: undefined label: 'sphx_glr_examples_built_reconstruction_reconst_cti.py' /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.nls_iter:1: WARNING: citation not found: Chang2005 /build/reproducible-path/dipy-1.9.0/.pybuild/cpython3_3.12_dipy/build/dipy/reconst/fwdti.py:docstring of dipy.reconst.fwdti.nls_fit_tensor:1: WARNING: citation not found: Chang2005 /build/reproducible-path/dipy-1.9.0/doc/stateoftheart.rst:7: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/stateoftheart.rst:24: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/user_guide/getting_started.rst:41: WARNING: undefined label: 'examples' /build/reproducible-path/dipy-1.9.0/doc/user_guide/introduction.rst:11: WARNING: undefined label: 'examples' generating indices... genindex py-modindex done writing additional pages... search done copying images... [ 17%] devel/gitwash/branch_dropdown.png copying images... [ 33%] devel/gitwash/collaborators.png copying images... [ 50%] devel/gitwash/forking_button.png copying images... [ 67%] theory/spherical_coordinates.png copying images... [ 83%] _static/colorfa.png copying images... [100%] _static/pretty_tracks.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1320 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/reproducible-path/dipy-1.9.0/doc' # references to cloudflare and github are privacy breaches sed 's@https://cdnjs\.cloudflare\.com/ajax/libs/mathjax/[^/]\+/@file:///usr/share/javascript/mathjax/unpacked/@' \ -i doc/_build/html/*.html \ doc/_build/html/interfaces/*.html \ doc/_build/html/theory/*.html sed 's@https://cdn\.jsdelivr\.net/npm/mathjax[@]3/es5/tex-mml-chtml\.js@file:///usr/share/nodejs/mathjax-full/es5/tex-mml-chtml.js@' \ -i doc/_build/html/*.html \ doc/_build/html/interfaces/*.html \ doc/_build/html/reference/*.html \ doc/_build/html/theory/*.html # FIXME: references to github are for images part of dipy_data, which # is not available in debian; these may need packaging to solve the # privacy breach here. # Run tests later on # cd build to prevent use of local/not-built source tree set -ex \ ; for PYTHON in 3.12 \ ; do PYPKG="/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python$PYTHON/dist-packages" \ ; export PYTHONPATH="$PYPKG" \ ; echo "I: Running Dipy unittests using $PYTHON" \ ; cd "$PYPKG" \ ; PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:$PATH \ xvfb-run -a -s "-screen 0 1280x1024x24 -noreset" \ python$PYTHON -m pytest -v -k 'not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py' dipy \ ; rm .pytest_cache -rf \ ; done + PYPKG=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + export PYTHONPATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + echo I: Running Dipy unittests using 3.12 I: Running Dipy unittests using 3.12 + cd /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages + PATH=/build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games xvfb-run -a -s -screen 0 1280x1024x24 -noreset python3.12 -m pytest -v -k not dipy/utils/tests/test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not dipy/align/tests/test_streamwarp.py and not dipy/denoise/tests/test_lpca.py and not dipy/reconst/tests/test_sfm.py and not dipy/workflows/tests/test_reconst_csa_csd.py and not dipy/workflows/tests/test_reconst_rumba.py dipy ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/dipy-1.9.0 configfile: pyproject.toml plugins: typeguard-4.4.1 collecting ... collected 1000 items / 9 deselected / 991 selected dipy/align/tests/test_api.py::test_syn_registration SKIPPED (test ne...) 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[ 99%] dipy/workflows/tests/test_workflow.py::test_force_overwrite PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_get_sub_runs PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_run PASSED [ 99%] dipy/workflows/tests/test_workflow.py::test_missing_file PASSED [100%] =============================== warnings summary =============================== debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/tests/test_reslice.py: 16 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/tests/test_gibbs.py: 27 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/tests/test_peaks.py: 70 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/tests/test_sfm.py: 16 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_parallel.py: 24 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_denoise.py: 1 warning debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_reconst_csa_csd.py: 12 warnings debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_reconst_rumba.py: 12 warnings /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=2555667) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/tests/test_sfm.py::test_sfm /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=2555667) is multi-threaded, use of fork() may lead to deadlocks in the child. pid = os.fork() debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_tracking.py::test_particle_filtering_tracking_workflows /build/reproducible-path/dipy-1.9.0/debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/workflows/tests/test_tracking.py:73: RuntimeWarning: invalid value encountered in cast save_nifti(path, arr.astype(np.uint8), affine) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 824 passed, 167 skipped, 9 deselected, 180 warnings in 1935.90s (0:32:15) === + rm .pytest_cache -rf # Cleanup files landing unnecessarily in the python3 modules directory. rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/*.nii.gz removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dirs.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/gfa.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/inc_static.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/indices.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/shm.nii.gz' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/values.nii.gz' rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/*.trk removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moved.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moved_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/moving_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/recognized_orig.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/static_centroids.trk' removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/tractogram.trk' rm -fv debian/python3-dipy/usr/lib/python3*/dist-packages/affine.txt removed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/affine.txt' # Cleanup files landing in non-standard path rm -rfv debian/python3-dipy/usr/doc removed 'debian/python3-dipy/usr/doc/dipy/examples/affine_registration_3d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/affine_registration_masks.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/afq_tract_profiles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/brain_extraction_dwi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_assignment_maps.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_extraction.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_group_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundle_shape_similarity.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/bundlewarp_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/cluster_confidence.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/combined_workflow_creation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/contextual_enhancement.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_ascm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_gibbs.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_localpca.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_mppca.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_nlmeans.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/denoise_patch2self.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/fast_streamline_search.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/fiber_to_bundle_coherence.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/gradients_spheres.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/histology_resdnn.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/kfold_xval.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/linear_fascicle_evaluation.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/motion_correction.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/path_length_map.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/piesno.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/quick_start.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csa.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csa_parallel.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csd.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_csd_parallel.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_cti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dki_micro.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsi_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dsid.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_dti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_forecast.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_fwdti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_gqi.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_ivim.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_mapmri.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_mcsd.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_msdki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qtdmri.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_qtiplus.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_rumba.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_sfm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_sh.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_shore.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reconst_shore_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/register_binary_fuzzy.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/reslice_datasets.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/restore_dti.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_clustering_features.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_clustering_metrics.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_extending_clustering_framework.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/segment_quickbundles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/simulate_dki.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/simulate_multi_tensor.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/snr_in_cc.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_formats.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_length.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_registration.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/streamline_tools.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/surface_seed.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/syn_registration_2d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/syn_registration_3d.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tissue_classification.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_bootstrap_peaks.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_deterministic.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_introduction_eudx.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_pft.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_probabilistic.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_ptt.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_rumba.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_sfm.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/tracking_stopping_criterion.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_advanced.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_bundles.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_roi_contour.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/viz_slice.py' removed 'debian/python3-dipy/usr/doc/dipy/examples/workflow_creation.py' removed directory 'debian/python3-dipy/usr/doc/dipy/examples' removed directory 'debian/python3-dipy/usr/doc/dipy' removed directory 'debian/python3-dipy/usr/doc' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-dipy-doc. If the default is wrong, please use --doc-main-package dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' set -e \ ; test -d debian/python3-dipy/usr/lib || exit 0 \ ; for lib in $(find debian/python3-dipy/usr/lib -name "*.so") \ ; do sdir=$(dirname $lib) \ ; tdir=debian/python3-dipy-lib/${sdir#*python3-dipy/} \ ; mkdir -p "${tdir}" \ ; mv -v "${lib}" "${tdir}" \ ; done renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/bundlemin.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/crosscorr.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/expectmax.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/parzenhist.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/sumsqdiff.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/transforms.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/transforms.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/align/vector_fields.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/core/interpolation.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/denspeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/enhancement_kernel.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/nlmeans_block.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/pca_noise_estimate.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/denoise/shift_twist_convolution.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/bootstrap_direction_getter.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/closest_peak_direction_getter.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/pmf.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/probabilistic_direction_getter.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/direction/ptt_direction_getter.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/eudx_direction_getter.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/quick_squash.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/recspeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/reconst/vec_val_sum.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/clustering_algorithms.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/clusteringspeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/cythonutils.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/featurespeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/metricspeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/segment/mrf.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/direction_getter.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/distances.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/fbcmeasures.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/localtrack.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/propspeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/stopping_criterion.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/streamlinespeed.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/tracking/vox2track.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/fast_numpy.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/omp.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/omp.cpython-312-aarch64-linux-gnu.so' renamed 'debian/python3-dipy/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so' -> 'debian/python3-dipy-lib/usr/lib/python3.12/dist-packages/dipy/utils/tests/test_fast_numpy.cpython-312-aarch64-linux-gnu.so' dh_numpy3 -ppython3-dipy-lib dh_python3 I: dh_python3 pydist:339: Ignoring complex environment marker: tomli; python_version < "3.11" and extra == "doc" make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild debian/rules execute_before_dh_link-indep make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/doctools.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/doctools.js' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/language_data.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/language_data.js' rm -fv debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/searchtools.js removed 'debian/python-dipy-doc/usr/share/doc/python-dipy-doc/html/_static/searchtools.js' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_compress -X.py -X.html -X.css -X.jpg -X.txt -X.js -X.json -X.rtc \ -X.par -X.bin -Xobjects.inv make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_fixperms -O--buildsystem=pybuild debian/rules execute_after_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' # Fix a couple of executables neither elf nor scripts. find debian/python3-dipy/usr/lib/python3*/dist-packages/ \ -name '*.py' \ -exec chmod -x '{}' '+' make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_missing -O--buildsystem=pybuild debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/dipy-1.9.0' dh_dwz || true make[1]: Leaving directory '/build/reproducible-path/dipy-1.9.0' dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dipy: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy-lib: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-dipy-lib: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dipy-lib' in '../python3-dipy-lib_1.9.0-8_arm64.deb'. dpkg-deb: building package 'python3-dipy' in '../python3-dipy_1.9.0-8_all.deb'. dpkg-deb: building package 'python3-dipy-lib-dbgsym' in '../python3-dipy-lib-dbgsym_1.9.0-8_arm64.deb'. dpkg-deb: building package 'python-dipy-doc' in '../python-dipy-doc_1.9.0-8_all.deb'. dpkg-genbuildinfo --build=binary -O../dipy_1.9.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../dipy_1.9.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from dipy-1.9.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2464446 and its subdirectories I: Current time: Wed Nov 6 02:57:32 -12 2024 I: pbuilder-time-stamp: 1730905052 Wed Nov 6 14:57:36 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Nov 6 14:57:36 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Nov 6 15:47:33 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Nov 6 15:47:34 UTC 2024 I: dipy_1.9.0-8_arm64.changes: Format: 1.8 Date: Tue, 24 Sep 2024 15:16:36 +0200 Source: dipy Binary: python-dipy-doc python3-dipy python3-dipy-lib python3-dipy-lib-dbgsym Architecture: all arm64 Version: 1.9.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python-dipy-doc - Python library for the analysis of diffusion MRI datasets -- docu python3-dipy - Python library for the analysis of diffusion MRI datasets python3-dipy-lib - Python library for the analysis of diffusion MRI datasets -- Pyth Changes: dipy (1.9.0-8) unstable; urgency=medium . * Pandas is optional, move it to Recommends; skip it as a build-dep on mips64el for now. Checksums-Sha1: 2e573befe0c1c00121f2686baf6c045c4bc14b11 13993 dipy_1.9.0-8_arm64.buildinfo a54f2a39790d08c0a26ccd4775ac0031f0db68a9 2812504 python-dipy-doc_1.9.0-8_all.deb 6148050f6178adb538c98816c98800fa4ad956da 20752296 python3-dipy-lib-dbgsym_1.9.0-8_arm64.deb 03160552d35c22f8dc597a49e41d0d06ca82de13 1966024 python3-dipy-lib_1.9.0-8_arm64.deb 5fea6d1f4958b511438b2fc91f23d09381eb2af2 3476176 python3-dipy_1.9.0-8_all.deb Checksums-Sha256: 9b03be10f0857631c7628f8f14fa9f71a7b375ae6bdbbb5333385fbe3aa29b59 13993 dipy_1.9.0-8_arm64.buildinfo f9b4e634256056307b47633497a6433b8577fa90ca5fd619b67f0a7cb3066ea0 2812504 python-dipy-doc_1.9.0-8_all.deb 31a62e4c1d057b93efc3d7107ad2b33f586d0c6b2727939ff9e892ccc2905c59 20752296 python3-dipy-lib-dbgsym_1.9.0-8_arm64.deb adee7c0c5e9bf0ad7cbefa15339a404e246e0b2ec3090460d698124a236ee1ef 1966024 python3-dipy-lib_1.9.0-8_arm64.deb 0f28d428af26bdc26dcea46f9bc154e2e53fd47197b57e26791f5ef55adc183b 3476176 python3-dipy_1.9.0-8_all.deb Files: 645c21595e6828ae2a10e8cd137e958f 13993 python optional dipy_1.9.0-8_arm64.buildinfo 5cd353f204d7dc607a60e2c8a27394e8 2812504 doc optional python-dipy-doc_1.9.0-8_all.deb d1470f4c382420d94ac7631b1095d1d5 20752296 debug optional python3-dipy-lib-dbgsym_1.9.0-8_arm64.deb c659124f39e714805fea70354099fc40 1966024 python optional python3-dipy-lib_1.9.0-8_arm64.deb c8eeeee174b00a1e4c0b2008cdd0a27d 3476176 python optional python3-dipy_1.9.0-8_all.deb Wed Nov 6 15:47:40 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-67087.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/dipy_1.9.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/dipy_1.9.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/dipy_1.9.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/b1/dipy_1.9.0-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wBmPbSm2/b2/dipy_1.9.0-8_arm64.changes ## close_archive (total time: 0.002s) 0.001s 104 calls diffoscope.comparators.xz.XzContainer 0.001s 84 calls diffoscope.comparators.deb.DebTarContainer 0.000s 14 calls diffoscope.comparators.deb.DebContainer 0.000s 20 calls diffoscope.comparators.tar.TarContainer ## command (total time: 2016.228s) 891.840s 38096 calls readelf 757.196s 4417 calls diff 265.030s 6864 calls objdump 53.187s 78 calls objcopy 42.051s 104 calls xz 3.961s 869 calls strings 2.821s 1551 calls html2text 0.057s 16 calls cmp 0.057s 16 calls cmp (external) 0.029s 247 calls cmp (internal) ## compare_files (cumulative) (total time: 5800.866s) 1085.187s 1 call abc.DotChangesFile 1085.104s 3 calls abc.DebFile 1084.874s 6 calls abc.XzFile 1082.933s 3 calls abc.DebDataTarFile 1066.108s 79 calls abc.ElfFile 358.014s 312 calls diffoscope.comparators.elf.ElfCodeSection 23.382s 1210 calls diffoscope.comparators.elf.ElfSection 12.506s 141 calls abc.HtmlFile 1.869s 118 calls diffoscope.comparators.elf.ElfStringSection 0.578s 39 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.261s 3 calls abc.TarFile 0.026s 3 calls abc.Md5sumsFile 0.026s 2 calls abc.TextFile ## container_extract (total time: 48.317s) 42.058s 104 calls diffoscope.comparators.xz.XzContainer 5.953s 614 calls diffoscope.comparators.deb.DebTarContainer 0.290s 110 calls diffoscope.comparators.deb.DebContainer 0.016s 26 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 2.663s) 2.663s 944 calls linediff ## has_same_content_as (total time: 0.128s) 0.077s 141 calls abc.HtmlFile 0.021s 79 calls abc.ElfFile 0.011s 1210 calls diffoscope.comparators.elf.ElfSection 0.009s 4 calls abc.DebFile 0.003s 312 calls diffoscope.comparators.elf.ElfCodeSection 0.001s 7 calls abc.TextFile 0.001s 118 calls diffoscope.comparators.elf.ElfStringSection 0.001s 6 calls abc.Md5sumsFile 0.001s 3 calls abc.DebDataTarFile 0.001s 5 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.001s 6 calls abc.XzFile 0.000s 39 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 3 calls abc.TarFile 0.000s 1 call abc.DotChangesFile ## main (total time: 1146.398s) 1146.392s 2 calls outputs 0.006s 1 call cleanup ## open_archive (total time: 0.002s) 0.001s 84 calls diffoscope.comparators.deb.DebTarContainer 0.001s 104 calls diffoscope.comparators.xz.XzContainer 0.000s 20 calls diffoscope.comparators.tar.TarContainer 0.000s 14 calls diffoscope.comparators.deb.DebContainer ## output (total time: 60.389s) 60.357s 1 call html 0.021s 1 call text 0.011s 1 call json ## recognizes (total time: 49.836s) 41.072s 2040 calls diffoscope.comparators.utils.archive.ArchiveMember 8.278s 20546 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.368s 12 calls diffoscope.comparators.binary.FilesystemFile 0.117s 432 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 1.538s) 1.538s 1934 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 19min 11.844s CPU time consumed: 24min 44.511s Wed Nov 6 16:06:57 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Nov 6 16:06:57 UTC 2024 E: dipy failed to build reproducibly in trixie on arm64. Wed Nov 6 16:06:59 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Nov 6 16:06:59 UTC 2024 I: Submitting 16K b1/dipy_1.9.0-8_arm64.buildinfo.asc Wed Nov 6 16:07:00 UTC 2024 I: Submitting 16K b2/dipy_1.9.0-8_arm64.buildinfo.asc Wed Nov 6 16:07:01 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 6 16:07:01 UTC 2024 I: Done submitting .buildinfo files. Wed Nov 6 16:07:01 UTC 2024 I: Removing signed dipy_1.9.0-8_arm64.buildinfo.asc files: removed './b1/dipy_1.9.0-8_arm64.buildinfo.asc' removed './b2/dipy_1.9.0-8_arm64.buildinfo.asc'